BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020873
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29835.3| unnamed protein product [Vitis vinifera]              110   2e-22
ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containi...   102   3e-20
ref|XP_003625140.1| Pentatricopeptide repeat-containing protein ...   101   7e-20
ref|XP_002529506.1| pentatricopeptide repeat-containing protein,...    99   3e-19
ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containi...    99   4e-19

>emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  110 bits (274), Expect = 2e-22
 Identities = 57/83 (68%), Positives = 65/83 (78%)
 Frame = +1

Query: 1   MMKLFFKMVASRAEINFGTYSILLKNLLAARKWRKYIEVLHWMEEAGLQPTLEMYQNISA 180
           MMKLF+K+VAS AEINF TYSILLKNLLAA  WRKYIEVL WMEEAGLQP++ MY++IS+
Sbjct: 743 MMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQPSVGMYRSISS 802

Query: 181 IAWKCGDTASVASIHERIESVKR 249
            A         A I ERIES+KR
Sbjct: 803 FAQNRSGAEYAAVIQERIESLKR 825


>ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score =  102 bits (254), Expect = 3e-20
 Identities = 53/78 (67%), Positives = 60/78 (76%)
 Frame = +1

Query: 1   MMKLFFKMVASRAEINFGTYSILLKNLLAARKWRKYIEVLHWMEEAGLQPTLEMYQNISA 180
           MMKLF+K+VAS AEINF TYSILLKNLLAA  WRKYIEVL WMEEAGLQP++ MY++IS+
Sbjct: 743 MMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQPSVGMYRSISS 802

Query: 181 IAWKCGDTASVASIHERI 234
            A         A I ERI
Sbjct: 803 FAQNRSGAEYAAVIQERI 820


>ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355500155|gb|AES81358.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 855

 Score =  101 bits (251), Expect = 7e-20
 Identities = 58/121 (47%), Positives = 72/121 (59%), Gaps = 21/121 (17%)
 Frame = +1

Query: 1    MMKLFFKMVASRAEINFGTYSILLKNLLAARKWRKYIE---------------------V 117
            M+KLFFKM+AS AE+NF TYSILLKNLL++  WRKY+E                     V
Sbjct: 735  MLKLFFKMLASGAEVNFNTYSILLKNLLSSGNWRKYLEDNSVAAVMCFLLSKQLAMDARV 794

Query: 118  LHWMEEAGLQPTLEMYQNISAIAWKCGDTASVASIHERIESVKRKVGDHISTPSPRCSSE 297
            L WME+AG+ P+ EMY++IS     CG   + A I ER+ES+KR  GD  S   P C S 
Sbjct: 795  LQWMEDAGIHPSNEMYRDISFSQKNCG-VENAAVIKERLESLKRNAGDQSSASQP-CESH 852

Query: 298  V 300
            V
Sbjct: 853  V 853


>ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531022|gb|EEF32875.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 808

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 48/78 (61%), Positives = 58/78 (74%)
 Frame = +1

Query: 1   MMKLFFKMVASRAEINFGTYSILLKNLLAARKWRKYIEVLHWMEEAGLQPTLEMYQNISA 180
           MMKLF+K+ AS AEINF TYSI+LKNLLA   WRKYIEVL WME+AG+QP++ MY +IS+
Sbjct: 724 MMKLFYKITASGAEINFNTYSIMLKNLLAVGNWRKYIEVLEWMEDAGIQPSIGMYYDISS 783

Query: 181 IAWKCGDTASVASIHERI 234
              K G     A I ER+
Sbjct: 784 YVQKGGGAEYAAIIQERV 801


>ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 45/78 (57%), Positives = 60/78 (76%)
 Frame = +1

Query: 1   MMKLFFKMVASRAEINFGTYSILLKNLLAARKWRKYIEVLHWMEEAGLQPTLEMYQNISA 180
           M+KLFFKM+AS A++N  TYSILLKNLL++  WRKY+EVL WME+AG+ P+ EMY +IS+
Sbjct: 732 MLKLFFKMLASGADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSKEMYHDISS 791

Query: 181 IAWKCGDTASVASIHERI 234
            + KC    + A I ER+
Sbjct: 792 FSQKCCGNENAAVIRERL 809