BLASTX nr result
ID: Coptis24_contig00020851
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00020851 (581 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 155 4e-36 ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ... 141 7e-32 ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho... 139 3e-31 ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho... 139 3e-31 ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 138 8e-31 >ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis] gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis] Length = 1203 Score = 155 bits (393), Expect = 4e-36 Identities = 72/115 (62%), Positives = 91/115 (79%) Frame = -3 Query: 345 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 166 E ++ KE +VTQVSFGGF KDV A++L +L++EIG +WRCRLK SWTPPES PNF++ Sbjct: 2 ETKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIG-QVWRCRLKTSWTPPESYPNFEI 60 Query: 165 QNIADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGCE 1 + A +Q+ D Y +VEPHAFVHFASP+SAT AKNAAG CELF+N P+ V+LG E Sbjct: 61 TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPE 115 >ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata] gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata] Length = 1197 Score = 141 bits (356), Expect = 7e-32 Identities = 68/119 (57%), Positives = 86/119 (72%) Frame = -3 Query: 363 MGSVGSENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPES 184 MGS GS K +VTQVS GGFG+ AK+L D+LEDE+G ++WRCRLK SWTPP S Sbjct: 1 MGSEGS-----MKNSVVTQVSIGGFGESTTAKQLTDYLEDELG-LVWRCRLKTSWTPPGS 54 Query: 183 LPNFQVQNIADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLG 7 PNF++ + + + K DDY+KVEPHAFVHFA P SA +A +AAG+C L + PL V+LG Sbjct: 55 YPNFEIADTSSIPKFDDYKKVEPHAFVHFAVPESAARAMDAAGQCNLILDGQPLKVSLG 113 >ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa] gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase [Populus trichocarpa] Length = 1198 Score = 139 bits (351), Expect = 3e-31 Identities = 68/115 (59%), Positives = 83/115 (72%) Frame = -3 Query: 345 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 166 E E KE +VTQVS GGF V AK+L ++LE EIG ++WRCRLK SWTPPES PNF++ Sbjct: 2 ETEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIG-LVWRCRLKTSWTPPESYPNFEI 60 Query: 165 QNIADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGCE 1 +I + +T+DY +VEPHAFVHFA P SAT A +AA RCELF N L +LG E Sbjct: 61 TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPE 115 >ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa] gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase [Populus trichocarpa] Length = 1200 Score = 139 bits (350), Expect = 3e-31 Identities = 66/113 (58%), Positives = 83/113 (73%) Frame = -3 Query: 345 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 166 E E KE +VTQVS GGF V AK+L ++L+ IG ++WRCRLK SWTPPES PNF++ Sbjct: 2 EAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIG-LVWRCRLKTSWTPPESYPNFEI 60 Query: 165 QNIADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLG 7 +I +++T+DY +V PHAFVHFA P SAT A NA+GRCELF N L V+LG Sbjct: 61 TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLG 113 >ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max] Length = 1204 Score = 138 bits (347), Expect = 8e-31 Identities = 63/113 (55%), Positives = 85/113 (75%) Frame = -3 Query: 339 EKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQVQN 160 E K+ +VTQ+S GGFG +V A +L ++LED+IG +++RCRLK SWTPPES P F + + Sbjct: 4 EGSEKDSVVTQISIGGFGSEVKASDLVNYLEDKIG-LVYRCRLKTSWTPPESYPEFNIID 62 Query: 159 IADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGCE 1 A++++TD+Y+KVEPHAFVHFASP S T A NA+G C+LF PL V+ G E Sbjct: 63 TANIRRTDNYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPE 115