BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020851
         (581 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   155   4e-36
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ...   141   7e-32
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...   139   3e-31
ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...   139   3e-31
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   138   8e-31

>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
           gi|223545464|gb|EEF46969.1| RNA-dependent RNA
           polymerase, putative [Ricinus communis]
          Length = 1203

 Score =  155 bits (393), Expect = 4e-36
 Identities = 72/115 (62%), Positives = 91/115 (79%)
 Frame = -3

Query: 345 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 166
           E ++  KE +VTQVSFGGF KDV A++L  +L++EIG  +WRCRLK SWTPPES PNF++
Sbjct: 2   ETKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIG-QVWRCRLKTSWTPPESYPNFEI 60

Query: 165 QNIADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGCE 1
            + A +Q+ D Y +VEPHAFVHFASP+SAT AKNAAG CELF+N  P+ V+LG E
Sbjct: 61  TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPE 115


>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
           gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
           6 [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score =  141 bits (356), Expect = 7e-32
 Identities = 68/119 (57%), Positives = 86/119 (72%)
 Frame = -3

Query: 363 MGSVGSENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPES 184
           MGS GS      K  +VTQVS GGFG+   AK+L D+LEDE+G ++WRCRLK SWTPP S
Sbjct: 1   MGSEGS-----MKNSVVTQVSIGGFGESTTAKQLTDYLEDELG-LVWRCRLKTSWTPPGS 54

Query: 183 LPNFQVQNIADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLG 7
            PNF++ + + + K DDY+KVEPHAFVHFA P SA +A +AAG+C L  +  PL V+LG
Sbjct: 55  YPNFEIADTSSIPKFDDYKKVEPHAFVHFAVPESAARAMDAAGQCNLILDGQPLKVSLG 113


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1198

 Score =  139 bits (351), Expect = 3e-31
 Identities = 68/115 (59%), Positives = 83/115 (72%)
 Frame = -3

Query: 345 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 166
           E E   KE +VTQVS GGF   V AK+L ++LE EIG ++WRCRLK SWTPPES PNF++
Sbjct: 2   ETEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 165 QNIADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGCE 1
            +I  + +T+DY +VEPHAFVHFA P SAT A +AA RCELF N   L  +LG E
Sbjct: 61  TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPE 115


>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1200

 Score =  139 bits (350), Expect = 3e-31
 Identities = 66/113 (58%), Positives = 83/113 (73%)
 Frame = -3

Query: 345 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 166
           E E   KE +VTQVS GGF   V AK+L ++L+  IG ++WRCRLK SWTPPES PNF++
Sbjct: 2   EAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 165 QNIADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLG 7
            +I  +++T+DY +V PHAFVHFA P SAT A NA+GRCELF N   L V+LG
Sbjct: 61  TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLG 113


>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
          Length = 1204

 Score =  138 bits (347), Expect = 8e-31
 Identities = 63/113 (55%), Positives = 85/113 (75%)
 Frame = -3

Query: 339 EKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQVQN 160
           E   K+ +VTQ+S GGFG +V A +L ++LED+IG +++RCRLK SWTPPES P F + +
Sbjct: 4   EGSEKDSVVTQISIGGFGSEVKASDLVNYLEDKIG-LVYRCRLKTSWTPPESYPEFNIID 62

Query: 159 IADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGCE 1
            A++++TD+Y+KVEPHAFVHFASP S T A NA+G C+LF    PL V+ G E
Sbjct: 63  TANIRRTDNYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPE 115