BLASTX nr result

ID: Coptis24_contig00020806 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020806
         (649 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517154.1| conserved hypothetical protein [Ricinus comm...   173   2e-41
ref|XP_002271997.1| PREDICTED: TVP38/TMEM64 family membrane prot...   166   3e-39
gb|ADE76872.1| unknown [Picea sitchensis]                             158   7e-37
ref|XP_002280327.1| PREDICTED: TVP38/TMEM64 family membrane prot...   152   7e-35
ref|NP_001239770.1| uncharacterized protein LOC100810779 [Glycin...   149   3e-34

>ref|XP_002517154.1| conserved hypothetical protein [Ricinus communis]
           gi|223543789|gb|EEF45317.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 302

 Score =  173 bits (439), Expect = 2e-41
 Identities = 96/168 (57%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
 Frame = +3

Query: 153 LLLKHVISFNKEEEEACRPPWRRRLSM---AVTKRAVFRFFIVFLILAAVGIACLTLPIE 323
           + LK  IS  ++ EE CRP WRR+LS    ++T  +  R  ++FL++AAV +AC TLP+E
Sbjct: 1   MCLKQSISEYEDNEEECRP-WRRKLSSTMASMTWGSALRITLLFLLIAAVVVACFTLPVE 59

Query: 324 KILKNFLVWIDQNLGRWGPLVLAVAYIPLTVLAVPASALTXXXXXXXXXXXXXXADSIXX 503
           KILK+FL+W++Q+LG WGPLVLAVAYIPLTVLAVPAS LT              ADSI  
Sbjct: 60  KILKDFLLWVEQDLGPWGPLVLAVAYIPLTVLAVPASVLTLGGGYLFGLPVGFVADSIGA 119

Query: 504 XXXXXXXXXXXXXIGRSFVISKLKDYPQFQAVAIATQRSGFKIVLLLR 647
                        IGRSFVISKLKDYPQF++VAIA QRSGFKIVLLLR
Sbjct: 120 TVGAGAAFLLGRTIGRSFVISKLKDYPQFRSVAIAIQRSGFKIVLLLR 167


>ref|XP_002271997.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Vitis
           vinifera]
          Length = 373

 Score =  166 bits (420), Expect = 3e-39
 Identities = 95/179 (53%), Positives = 117/179 (65%)
 Frame = +3

Query: 111 FIKLANIGGLRARSLLLKHVISFNKEEEEACRPPWRRRLSMAVTKRAVFRFFIVFLILAA 290
           ++ LAN+G LRARS L +   +    E+ +   PWRRRLS ++   + FR  ++ L  AA
Sbjct: 65  WLNLANVGRLRARSSLKQENANGIDAEDSS---PWRRRLS-SMAWPSSFRMALLLLFFAA 120

Query: 291 VGIACLTLPIEKILKNFLVWIDQNLGRWGPLVLAVAYIPLTVLAVPASALTXXXXXXXXX 470
           +  ACLTLPIEKILK FL+WI ++LG WGPLVLAVAYIPLTVLAVPAS LT         
Sbjct: 121 ISTACLTLPIEKILKGFLLWIKRDLGPWGPLVLAVAYIPLTVLAVPASILTIGGGYLFGL 180

Query: 471 XXXXXADSIXXXXXXXXXXXXXXXIGRSFVISKLKDYPQFQAVAIATQRSGFKIVLLLR 647
                ADSI               +GRS+V SKLK+YP+FQA+A+A QRSGFKIVLLLR
Sbjct: 181 PVGFFADSIGATIGATAAFILGRTLGRSYVTSKLKNYPKFQAIAVAIQRSGFKIVLLLR 239


>gb|ADE76872.1| unknown [Picea sitchensis]
          Length = 275

 Score =  158 bits (400), Expect = 7e-37
 Identities = 83/139 (59%), Positives = 95/139 (68%)
 Frame = +3

Query: 231 MAVTKRAVFRFFIVFLILAAVGIACLTLPIEKILKNFLVWIDQNLGRWGPLVLAVAYIPL 410
           M +T+ ++FR  +  L+L A    CLTLP++K LK+FLVWID+NLG WGPLVLAVAYIPL
Sbjct: 1   MTITRGSMFRLLLALLLLGAFATVCLTLPMQKTLKDFLVWIDKNLGHWGPLVLAVAYIPL 60

Query: 411 TVLAVPASALTXXXXXXXXXXXXXXADSIXXXXXXXXXXXXXXXIGRSFVISKLKDYPQF 590
           TVLAVPAS LT              ADSI               IGRS+V+SKLKDYPQF
Sbjct: 61  TVLAVPASILTLGGGYLFGLTVGFIADSIGSTAGATAAFLVGKTIGRSYVVSKLKDYPQF 120

Query: 591 QAVAIATQRSGFKIVLLLR 647
           QAVAIA QRSGFKIVLLLR
Sbjct: 121 QAVAIAVQRSGFKIVLLLR 139


>ref|XP_002280327.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305 [Vitis
           vinifera] gi|297736982|emb|CBI26183.3| unnamed protein
           product [Vitis vinifera]
          Length = 274

 Score =  152 bits (383), Expect = 7e-35
 Identities = 81/139 (58%), Positives = 95/139 (68%)
 Frame = +3

Query: 231 MAVTKRAVFRFFIVFLILAAVGIACLTLPIEKILKNFLVWIDQNLGRWGPLVLAVAYIPL 410
           MA +  +  R   + L++AA+ +AC TLP+EKILK+FL+WI+Q+LG WGPL LAVAYIPL
Sbjct: 1   MAFSWLSFLRITFLLLLIAAIAVACFTLPVEKILKDFLLWIEQDLGPWGPLALAVAYIPL 60

Query: 411 TVLAVPASALTXXXXXXXXXXXXXXADSIXXXXXXXXXXXXXXXIGRSFVISKLKDYPQF 590
           TVLAVPAS LT              ADSI               IGRS+VISKLKDYPQF
Sbjct: 61  TVLAVPASVLTLGGGYLFGLPVGFVADSIGATVGAGAAFLLGRTIGRSYVISKLKDYPQF 120

Query: 591 QAVAIATQRSGFKIVLLLR 647
           +AVAIA QRSGFKIVLLLR
Sbjct: 121 RAVAIAIQRSGFKIVLLLR 139


>ref|NP_001239770.1| uncharacterized protein LOC100810779 [Glycine max]
           gi|255646580|gb|ACU23764.1| unknown [Glycine max]
          Length = 274

 Score =  149 bits (377), Expect = 3e-34
 Identities = 79/139 (56%), Positives = 97/139 (69%)
 Frame = +3

Query: 231 MAVTKRAVFRFFIVFLILAAVGIACLTLPIEKILKNFLVWIDQNLGRWGPLVLAVAYIPL 410
           M+++  +  R  I+ L+LAAV +AC TLPIEK++K+FL+W+D +LG WGPLVLAVAYIPL
Sbjct: 1   MSLSWASALRITILLLLLAAVIVACFTLPIEKMMKDFLLWVDHDLGPWGPLVLAVAYIPL 60

Query: 411 TVLAVPASALTXXXXXXXXXXXXXXADSIXXXXXXXXXXXXXXXIGRSFVISKLKDYPQF 590
           TVLAVPAS LT              ADSI               IGRSFV+S+LKDYPQF
Sbjct: 61  TVLAVPASVLTLGGGYLFGLPVGFVADSIGATVGAGAAFLLGRTIGRSFVVSRLKDYPQF 120

Query: 591 QAVAIATQRSGFKIVLLLR 647
           ++VAIA +RSGFKIVLLLR
Sbjct: 121 RSVAIAIRRSGFKIVLLLR 139


Top