BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020790
         (401 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284586.1| PREDICTED: psbP domain-containing protein 5,...    99   5e-19
ref|NP_196706.2| PsbP domain-containing protein 5 [Arabidopsis t...    92   3e-17
ref|XP_002871475.1| hypothetical protein ARALYDRAFT_487981 [Arab...    92   4e-17
emb|CAB87705.1| putative protein [Arabidopsis thaliana]                92   4e-17
ref|XP_002309586.1| predicted protein [Populus trichocarpa] gi|2...    92   6e-17

>ref|XP_002284586.1| PREDICTED: psbP domain-containing protein 5, chloroplastic [Vitis
           vinifera] gi|296081930|emb|CBI20935.3| unnamed protein
           product [Vitis vinifera]
          Length = 284

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 57/121 (47%), Positives = 73/121 (60%)
 Frame = +3

Query: 39  PNLPILTSVSCMSRHHNKVFLNRSTRSCSAIHSLENEYQTQGFKDTTGFGKRELMLFGLS 218
           PNL I  + +    +  K  L     SCS + S  N           GF +R+L+LFG S
Sbjct: 7   PNLLIFRNHTRTMVNQKKCGLPEKIISCSCVPSRPNS--------KIGFYRRDLILFGFS 58

Query: 219 SSVSMLLSTAVAAAATETDKKLKMALVVDDINAYSFLYPLEMPSKKFVFKWVESRKPERY 398
           SS +++   +       T+++ KMA VVDDINAYS+LYPLE+PSKK VFKWVESRKPERY
Sbjct: 59  SSAALIFPPS----GYGTEEEFKMASVVDDINAYSYLYPLELPSKKLVFKWVESRKPERY 114

Query: 399 S 401
           S
Sbjct: 115 S 115


>ref|NP_196706.2| PsbP domain-containing protein 5 [Arabidopsis thaliana]
           gi|190358920|sp|P82715.3|PPD5_ARATH RecName: Full=PsbP
           domain-containing protein 5, chloroplastic; AltName:
           Full=OEC23-like protein 6; AltName: Full=PsbP-related
           thylakoid lumenal protein 4; AltName: Full=Thylakoid
           lumenal 35.8 kDa protein; Flags: Precursor
           gi|18252955|gb|AAL62404.1| putative protein [Arabidopsis
           thaliana] gi|21389651|gb|AAM48024.1| putative protein
           [Arabidopsis thaliana] gi|332004298|gb|AED91681.1| PsbP
           domain-containing protein 5 [Arabidopsis thaliana]
          Length = 297

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 52/118 (44%), Positives = 67/118 (56%), Gaps = 12/118 (10%)
 Frame = +3

Query: 84  HNKVFLNRSTRSCSAIHSLENEYQ-------TQGFKDTTGFGKRELMLFGLSSSVSMLLS 242
           ++++F  RS+   S  H    E         T+      G  +R+L+L GLSS +SM L 
Sbjct: 12  NSRLFRCRSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVLIGLSSPLSMFLP 71

Query: 243 TAVAAAATETDKK-----LKMALVVDDINAYSFLYPLEMPSKKFVFKWVESRKPERYS 401
            +      E D K     LKM  +VDDINAYS+ YPL+ PS+K VFKWVESRKPERYS
Sbjct: 72  LSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKWVESRKPERYS 129


>ref|XP_002871475.1| hypothetical protein ARALYDRAFT_487981 [Arabidopsis lyrata subsp.
           lyrata] gi|297317312|gb|EFH47734.1| hypothetical protein
           ARALYDRAFT_487981 [Arabidopsis lyrata subsp. lyrata]
          Length = 297

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 52/118 (44%), Positives = 68/118 (57%), Gaps = 12/118 (10%)
 Frame = +3

Query: 84  HNKVFLNRSTRSCSAIHSLENEY-------QTQGFKDTTGFGKRELMLFGLSSSVSMLLS 242
           ++++F  R++   S  H    E         T+      G  +R+L+L GLSS +SMLL 
Sbjct: 12  NSRLFRCRNSNISSKYHGESKELVIARSGVSTRSISSEKGLSRRDLVLIGLSSPLSMLLP 71

Query: 243 TAVAAAATETDKKL-----KMALVVDDINAYSFLYPLEMPSKKFVFKWVESRKPERYS 401
            +      E D KL     KM  +VDDINAYS+ YPL+ PS+K VFKWVESRKPERYS
Sbjct: 72  LSSPVTHAEEDLKLGTEELKMGTMVDDINAYSYAYPLDYPSEKLVFKWVESRKPERYS 129


>emb|CAB87705.1| putative protein [Arabidopsis thaliana]
          Length = 319

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 56/133 (42%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
 Frame = +3

Query: 39  PNLPILTSVSCMSRHHNKVFLNRSTRSCSAIHSLENEYQ-------TQGFKDTTGFGKRE 197
           P   I  ++ C S       L RS+   S  H    E         T+      G  +R+
Sbjct: 13  PEHAIAMALLCPSLPSPNSRLFRSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRD 72

Query: 198 LMLFGLSSSVSMLLSTAVAAAATETDKK-----LKMALVVDDINAYSFLYPLEMPSKKFV 362
           L+L GLSS +SM L  +      E D K     LKM  +VDDINAYS+ YPL+ PS+K V
Sbjct: 73  LVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLV 132

Query: 363 FKWVESRKPERYS 401
           FKWVESRKPERYS
Sbjct: 133 FKWVESRKPERYS 145


>ref|XP_002309586.1| predicted protein [Populus trichocarpa] gi|222855562|gb|EEE93109.1|
           predicted protein [Populus trichocarpa]
          Length = 295

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 8/117 (6%)
 Frame = +3

Query: 75  SRHHNKVFLNRST-----RSCSAIHSLENEYQTQGFKDTT---GFGKRELMLFGLSSSVS 230
           + HHN  F N+S      + C     +          D +   GF +R+L+LFGLSSS+S
Sbjct: 14  THHHNPFFRNQSRILLSQKKCKLKEKIMACSCACSSSDPSLQNGFCRRDLVLFGLSSSLS 73

Query: 231 MLLSTAVAAAATETDKKLKMALVVDDINAYSFLYPLEMPSKKFVFKWVESRKPERYS 401
           +   ++   A    ++ LKMA VVD+INAY++ YP E+PSKKF+FKWVESRKPERYS
Sbjct: 74  IAFPSSEILA----EEDLKMASVVDEINAYTYSYPAELPSKKFLFKWVESRKPERYS 126