BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020765
         (737 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containi...   326   4e-87
ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containi...   306   2e-81
ref|XP_002330193.1| predicted protein [Populus trichocarpa] gi|2...   300   2e-79
ref|XP_003591206.1| Pentatricopeptide repeat-containing protein ...   299   4e-79
ref|NP_172391.2| pentatricopeptide repeat-containing protein [Ar...   286   2e-75

>ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
           [Vitis vinifera]
          Length = 485

 Score =  326 bits (835), Expect = 4e-87
 Identities = 150/247 (60%), Positives = 198/247 (80%), Gaps = 3/247 (1%)
 Frame = -3

Query: 732 IVRVGFELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVVVWNMMIRGSCKEGNVDMG 553
           ++ VGFE ++ ++IG+++ YTSC RM DAK+VFD M  +DV+VWNMMIRG CK G+++MG
Sbjct: 133 VIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMG 192

Query: 552 FHVFQQMRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDASLVTVLPVCARL 373
           F +F+QMR+RS VSWN MI GL QSGRD  ALE+F++M D GFE DDA++VT+LPVCARL
Sbjct: 193 FRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARL 252

Query: 372 GASELGSWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDKMPKKSVVSWNTM 193
           GA ++G WIHSYA+S  L + F+ VGNSL+DFY KCG LE AWR F++MP+K+VVSWN M
Sbjct: 253 GAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAM 312

Query: 192 ISGLAYNGQGKLGLEMFERM---SVDPNDATFLGALACCAHTGMVPKGLELFSLMTEKYK 22
           ISGL +NG+G+LG ++FE M    V PNDATF+G L+CCAH G+V +G  LF+ MT  +K
Sbjct: 313 ISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHK 372

Query: 21  IKPRLEH 1
           ++P+LEH
Sbjct: 373 MEPKLEH 379



 Score = 76.6 bits (187), Expect = 5e-12
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 11/212 (5%)
 Frame = -3

Query: 660 RMGDAKRVFDMMPVKDVVVWNMMIRGSCKEGNVDMGFHVFQQMRERSNVSWNIMIGGLAQ 481
           +MG A  VF      +++++N MI+G    G  +    +F QM+ R           L +
Sbjct: 56  KMGYANLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLK 115

Query: 480 SGRDV----VALEVFKQMLDEGFELDDASLVTVLPVCARLGASELGSWIHSYADSRGLFQ 313
           S   +    +   V   ++  GFE   +  + ++ +    G  E         D++ +F 
Sbjct: 116 SCSGICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRME---------DAKKVFD 166

Query: 312 KF----VQVGNSLLDFYHKCGDLEMAWRTFDKMPKKSVVSWNTMISGLAYNGQGKLGLEM 145
           +     V V N ++  + K GD+EM +R F +M  +SVVSWN+MI+GL  +G+    LE+
Sbjct: 167 EMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALEL 226

Query: 144 FERM---SVDPNDATFLGALACCAHTGMVPKG 58
           F  M     +P+DAT +  L  CA  G V  G
Sbjct: 227 FREMWDHGFEPDDATVVTILPVCARLGAVDVG 258


>ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09190-like [Glycine max]
          Length = 483

 Score =  306 bits (785), Expect = 2e-81
 Identities = 141/247 (57%), Positives = 191/247 (77%), Gaps = 3/247 (1%)
 Frame = -3

Query: 732 IVRVGFELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVVVWNMMIRGSCKEGNVDMG 553
           +VR+GF  +  V++  +E Y SC+RMGDA +VFD M   DVVVWN+MIRG CK G+++ G
Sbjct: 132 VVRLGFTRHASVRVAALEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETG 191

Query: 552 FHVFQQMRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDASLVTVLPVCARL 373
             VF QM+ER+ VSWN+M+  LA++ ++  ALE+F +ML++GFE DDASLVTVLPVCARL
Sbjct: 192 MKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFNEMLEQGFEPDDASLVTVLPVCARL 251

Query: 372 GASELGSWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDKMPKKSVVSWNTM 193
           GA ++G WIHSYA+S+G  Q  + VGNSL+DFY KCG+L+ AW  F+ M  K+VVSWN M
Sbjct: 252 GAVDIGEWIHSYANSKGFLQDTINVGNSLVDFYCKCGNLQAAWSIFNDMASKNVVSWNAM 311

Query: 192 ISGLAYNGQGKLGLEMFERM---SVDPNDATFLGALACCAHTGMVPKGLELFSLMTEKYK 22
           ISGLAYNG+G++G+ +FE M     +PND+TF+G LACCAH G+V +G +LF+ M+ K+K
Sbjct: 312 ISGLAYNGEGEVGVNLFEEMVHGGFEPNDSTFVGVLACCAHVGLVDRGRDLFASMSVKFK 371

Query: 21  IKPRLEH 1
           + P+LEH
Sbjct: 372 VSPKLEH 378


>ref|XP_002330193.1| predicted protein [Populus trichocarpa] gi|222871649|gb|EEF08780.1|
           predicted protein [Populus trichocarpa]
          Length = 485

 Score =  300 bits (768), Expect = 2e-79
 Identities = 143/248 (57%), Positives = 192/248 (77%), Gaps = 3/248 (1%)
 Frame = -3

Query: 735 EIVRVGFELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVVVWNMMIRGSCKEGNVDM 556
           E++ VGFE ++ ++IG++E Y+SC  M DA++VFD M  +DV+VWN+MI G CK G+VDM
Sbjct: 132 EVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDM 191

Query: 555 GFHVFQQMRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDASLVTVLPVCAR 376
           G  +F+QMR+RS VSWNIMI  LAQS RD  AL +F  MLD GF+ D+A++VTVLP+CAR
Sbjct: 192 GLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEATVVTVLPICAR 251

Query: 375 LGASELGSWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDKMPKKSVVSWNT 196
           LG+ ++G WIHSYA S GL++ FV VGN+L+DFY+K G  E A R FD+MP+K+V+SWNT
Sbjct: 252 LGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMPRKNVISWNT 311

Query: 195 MISGLAYNGQGKLGLEMFERM---SVDPNDATFLGALACCAHTGMVPKGLELFSLMTEKY 25
           +ISGLA NG G+LG+E+ E M    V PNDATF+G L+CCAH G+  +G EL + M E +
Sbjct: 312 LISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCCAHAGLFERGRELLASMVEHH 371

Query: 24  KIKPRLEH 1
           +I+P+LEH
Sbjct: 372 QIEPKLEH 379



 Score = 79.3 bits (194), Expect = 7e-13
 Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 7/231 (3%)
 Frame = -3

Query: 729 VRVGFELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVVVWNMMIRGSCKEGNVDMGF 550
           +R G    N +    V    S  +M  A R+F       ++++N MI+G    G  +  F
Sbjct: 33  LRHGLNQLNQILSHFVSICGSLNKMAYANRIFKQTQNPTIILFNAMIKGYSLNGPFEESF 92

Query: 549 HVFQQMRERSNVSWNIMIGGLAQSGRDVVALE----VFKQMLDEGFELDDASLVTVLPVC 382
            +F  M+ R        +  L ++   +  L+    + K++L  GFE   A  + V+ + 
Sbjct: 93  RLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELY 152

Query: 381 ARLGASELGSWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDKMPKKSVVSW 202
           +  G  E    +        ++Q+ V V N ++  + K GD++M    F +M K+SVVSW
Sbjct: 153 SSCGVMEDAEKVFD-----EMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSW 207

Query: 201 NTMISGLAYNGQGKLGLEMFERM---SVDPNDATFLGALACCAHTGMVPKG 58
           N MIS LA + +    L +F  M      P++AT +  L  CA  G V  G
Sbjct: 208 NIMISCLAQSRRDSEALGLFHDMLDWGFKPDEATVVTVLPICARLGSVDVG 258


>ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355480254|gb|AES61457.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 490

 Score =  299 bits (766), Expect = 4e-79
 Identities = 139/247 (56%), Positives = 191/247 (77%), Gaps = 3/247 (1%)
 Frame = -3

Query: 732 IVRVGFELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVVVWNMMIRGSCKEGNVDMG 553
           +  +GF  ++ V+IGL+E Y++C +M DA +VFD M  ++VVVWN+MI G CK G++++G
Sbjct: 134 VTALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIG 193

Query: 552 FHVFQQMRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDASLVTVLPVCARL 373
             +F++M +RS VSWN+MI  LAQ  +D  A  +F++ML++GFE DDA+LVTVLPVCARL
Sbjct: 194 LKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVCARL 253

Query: 372 GASELGSWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDKMPKKSVVSWNTM 193
           G  + G WIHSYAD +GL +K + VGNSL+DFY KCG+LE AW+ F++M KK+VVSWN M
Sbjct: 254 GDVDAGEWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAM 313

Query: 192 ISGLAYNGQGKLGLEMFERMS---VDPNDATFLGALACCAHTGMVPKGLELFSLMTEKYK 22
           ISGL  NG+G+LG+E+FE+M+   V P+D+TF+G LACCAH G V KG E+F  MT K+K
Sbjct: 314 ISGLGLNGKGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVDKGREIFDSMTVKFK 373

Query: 21  IKPRLEH 1
           + P+LEH
Sbjct: 374 LSPKLEH 380


>ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75099767|sp|O80488.1|PPR23_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g09190 gi|3249103|gb|AAC24086.1| Contains similarity
           to membrane-associated salt-inducible protein homolog
           TM021B04.10 gb|2191192 from A. thaliana BAC gb|AF007271
           [Arabidopsis thaliana] gi|28393182|gb|AAO42022.1|
           unknown protein [Arabidopsis thaliana]
           gi|332190289|gb|AEE28410.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 484

 Score =  286 bits (733), Expect = 2e-75
 Identities = 137/249 (55%), Positives = 186/249 (74%), Gaps = 4/249 (1%)
 Frame = -3

Query: 735 EIVRVGFELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVVVWNMMIRGSCKEGNVDM 556
           E++R GF     ++IG+VE YTS  RMGDA++VFD M  ++VVVWN+MIRG C  G+V+ 
Sbjct: 127 ELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVER 186

Query: 555 GFHVFQQMRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDASLVTVLPVCAR 376
           G H+F+QM ERS VSWN MI  L++ GRD  ALE+F +M+D+GF+ D+A++VTVLP+ A 
Sbjct: 187 GLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISAS 246

Query: 375 LGASELGSWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDKMPKKSVVSWNT 196
           LG  + G WIHS A+S GLF+ F+ VGN+L+DFY K GDLE A   F KM +++VVSWNT
Sbjct: 247 LGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNT 306

Query: 195 MISGLAYNGQGKLGLEMFERM----SVDPNDATFLGALACCAHTGMVPKGLELFSLMTEK 28
           +ISG A NG+G+ G+++F+ M     V PN+ATFLG LACC++TG V +G ELF LM E+
Sbjct: 307 LISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMER 366

Query: 27  YKIKPRLEH 1
           +K++ R EH
Sbjct: 367 FKLEARTEH 375