BLASTX nr result
ID: Coptis24_contig00020728
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00020728
(666 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera] 213 2e-53
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia] 194 2e-47
ref|XP_003530517.1| PREDICTED: uncharacterized protein LOC100800... 193 3e-47
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 192 4e-47
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 191 1e-46
>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
Length = 1521
Score = 213 bits (543), Expect = 2e-53
Identities = 102/220 (46%), Positives = 146/220 (66%), Gaps = 1/220 (0%)
Frame = -1
Query: 657 PVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRHYLLHCEFVLKYDHEALRFFNSQAKV 478
PVAF+S+KL G +YSTYD+E YAVVQA+RHW+HYL + EFVL DHEALR+ NSQ K+
Sbjct: 939 PVAFFSEKLNGAKKKYSTYDLEFYAVVQAIRHWQHYLSYKEFVLYSDHEALRYLNSQKKL 998
Query: 477 TDCQAKWFAFLQGYNFLLKHLPSTANKVADALSRREHILVSLRTTVFGFDELNGLYALVP 298
AKW +FLQ + F LKH NKVADALSR+ +LV++ TT GF+EL Y
Sbjct: 999 NSRHAKWSSFLQLFTFNLKHCAGIENKVADALSRKALLLVNMSTTTIGFEELKHCYDNDA 1058
Query: 297 FFDPIFQSCINNDSISG-EYILEHGFLFRGSQLCIPQSSFREKLITEFHSGGLAGHAGVL 121
F ++ S ++ + ++ + G+LF ++LC+P++S R+ +I E H GG+ GH G
Sbjct: 1059 DFGDVYSSLLSGSKATCIDFQILEGYLFYKNRLCLPRTSLRDHVIWELHGGGMGGHFGRD 1118
Query: 120 RTLLGLRERYFWPSMRRDTNAFIRRCYTCQIAKGQKTNAG 1
+T+ + +R+FWPS+++D I++C CQ+ KG K N G
Sbjct: 1119 KTIALVEDRFFWPSLKKDVWKVIKQCRACQVGKGSKQNTG 1158
>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 194 bits (492), Expect = 2e-47
Identities = 95/214 (44%), Positives = 134/214 (62%), Gaps = 1/214 (0%)
Frame = -1
Query: 660 RPVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRHYLLHCEFVLKYDHEALRFFNSQAK 481
+PVA++S+KL G +YSTYD E YA+++AL HW HYL FVL DHEAL++ N Q K
Sbjct: 931 KPVAYFSEKLNGAKLKYSTYDKEFYAIIRALMHWNHYLKPKPFVLHSDHEALKYINGQHK 990
Query: 480 VTDCQAKWFAFLQGYNFLLKHLPSTANKVADALSRREHILVSLRTTVFGFDELNGLYALV 301
+ AKW FLQ + F K+ N VADALSRR +L + V GF+ + LY
Sbjct: 991 LNFRHAKWVEFLQSFTFSSKYKEGKKNVVADALSRRHSLLSVMSNRVLGFEFMKELYKED 1050
Query: 300 PFFDPIFQSCINNDSISG-EYILEHGFLFRGSQLCIPQSSFREKLITEFHSGGLAGHAGV 124
P F + + G +Y+L+ GFLF+G++LC+P+ S+R+ LI E HSGG+ GH GV
Sbjct: 1051 PDFSEEWITQTEGHKNQGSKYLLQEGFLFQGNKLCVPRGSYRDLLIREVHSGGMGGHFGV 1110
Query: 123 LRTLLGLRERYFWPSMRRDTNAFIRRCYTCQIAK 22
+TL L+++++WP M D +RRC CQ++K
Sbjct: 1111 QKTLEILQDQFYWPRMMGDVQIILRRCSKCQLSK 1144
>ref|XP_003530517.1| PREDICTED: uncharacterized protein LOC100800881 [Glycine max]
Length = 1746
Score = 193 bits (490), Expect = 3e-47
Identities = 97/214 (45%), Positives = 135/214 (63%)
Frame = -1
Query: 657 PVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRHYLLHCEFVLKYDHEALRFFNSQAKV 478
P+A++S+KL + YSTYD ELYA+V+AL+ W+HYLL EFV+ DHE+L++ Q K+
Sbjct: 964 PIAYFSEKLGAAALNYSTYDKELYALVRALQTWQHYLLPKEFVIHSDHESLKYLKGQGKL 1023
Query: 477 TDCQAKWFAFLQGYNFLLKHLPSTANKVADALSRREHILVSLRTTVFGFDELNGLYALVP 298
AKW FL+ + +++KH N VADALSRR +L L T +FG + L +Y
Sbjct: 1024 NKRHAKWVEFLEQFPYVIKHKKGKGNVVADALSRRHALLAMLETKLFGLESLKDMYVHDV 1083
Query: 297 FFDPIFQSCINNDSISGEYILEHGFLFRGSQLCIPQSSFREKLITEFHSGGLAGHAGVLR 118
F IF +C S +G Y +GFLF+ ++LC+P+ S RE L++E H GGL GH GV +
Sbjct: 1084 DFAEIFAAC-EKFSENG-YYRHNGFLFKANKLCVPKCSIRELLVSESHEGGLMGHFGVQK 1141
Query: 117 TLLGLRERYFWPSMRRDTNAFIRRCYTCQIAKGQ 16
TL L E +FWP MRRD + F C C+ AK +
Sbjct: 1142 TLEILLEHFFWPHMRRDVHKFCGHCIVCKQAKSK 1175
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 192 bits (489), Expect = 4e-47
Identities = 95/215 (44%), Positives = 136/215 (63%)
Frame = -1
Query: 660 RPVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRHYLLHCEFVLKYDHEALRFFNSQAK 481
+PVA++S+KL GPS YSTYD EL+A+V+ L W+HYL EFV+ DHE+L+ SQAK
Sbjct: 375 KPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAK 434
Query: 480 VTDCQAKWFAFLQGYNFLLKHLPSTANKVADALSRREHILVSLRTTVFGFDELNGLYALV 301
+ AKW F++ + +++KH N +ADALSRR +L L +FG + + YA
Sbjct: 435 LNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHD 494
Query: 300 PFFDPIFQSCINNDSISGEYILEHGFLFRGSQLCIPQSSFREKLITEFHSGGLAGHAGVL 121
F + +C+ + + +++L +GF+FR ++LCIP SS R L+ E H GGL GH GV
Sbjct: 495 DDFKDVLLNCMEGRTWN-KFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVK 553
Query: 120 RTLLGLRERYFWPSMRRDTNAFIRRCYTCQIAKGQ 16
+T L + +FWP MRRD F+ RC TCQ AK +
Sbjct: 554 KTEDILADHFFWPKMRRDVERFVARCTTCQKAKSR 588
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 191 bits (484), Expect = 1e-46
Identities = 95/215 (44%), Positives = 133/215 (61%)
Frame = -1
Query: 660 RPVAFYSQKLCGPSSRYSTYDVELYAVVQALRHWRHYLLHCEFVLKYDHEALRFFNSQAK 481
+PVA++S+KL GPS YSTYD EL+A+V+ L W+HYL EFV+ DHE+L+ SQAK
Sbjct: 1062 KPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAK 1121
Query: 480 VTDCQAKWFAFLQGYNFLLKHLPSTANKVADALSRREHILVSLRTTVFGFDELNGLYALV 301
+ AKW F++ + +++KH N +ADALSRR +L L +FG + + YA
Sbjct: 1122 LNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHD 1181
Query: 300 PFFDPIFQSCINNDSISGEYILEHGFLFRGSQLCIPQSSFREKLITEFHSGGLAGHAGVL 121
F + +C +++L +GF+FR ++LCIP SS R L+ E H GGL GH GV
Sbjct: 1182 DDFKNVLLNC-KEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVK 1240
Query: 120 RTLLGLRERYFWPSMRRDTNAFIRRCYTCQIAKGQ 16
+T L + +FWP MRRD F+ RC TCQ AK +
Sbjct: 1241 KTEDILADHFFWPKMRRDVERFVARCTTCQKAKSR 1275