BLASTX nr result
ID: Coptis24_contig00020727
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00020727 (1859 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera] 756 0.0 ref|XP_004134713.1| PREDICTED: general transcription factor IIH ... 724 0.0 ref|XP_002305144.1| predicted protein [Populus trichocarpa] gi|2... 723 0.0 ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus commun... 722 0.0 ref|XP_003529318.1| PREDICTED: general transcription factor IIH ... 700 0.0 >emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera] Length = 451 Score = 756 bits (1951), Expect = 0.0 Identities = 370/451 (82%), Positives = 414/451 (91%) Frame = -1 Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584 MPQVKIIAKNFMDMVASLPA+KLD LY NTFICEA+LRSLP LAKKY+LQ+L+IDV VT Sbjct: 1 MPQVKIIAKNFMDMVASLPAMKLDALYHNTFICEAILRSLPPLAKKYILQMLYIDVPVTA 60 Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404 K++EEW+L DGFSKHRVA+DRL+QLRVF E+ DRKK++SYRLNP FQ NLQK+L++GGVL Sbjct: 61 KAMEEWVLADGFSKHRVAIDRLIQLRVFTETSDRKKETSYRLNPTFQTNLQKHLIYGGVL 120 Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224 PREPMPS+ITVRLP+L++L+AYAL QWECFLLQLISS+Q E+ T+FSSS+MK+FQRGLL+ Sbjct: 121 PREPMPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSLMKVFQRGLLT 180 Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044 QREKEAPRLT +GFQFLL+DTNAQLWYI+REYISNSE+RGVDPADLISFLLELSFHVTGE Sbjct: 181 QREKEAPRLTESGFQFLLMDTNAQLWYIMREYISNSEERGVDPADLISFLLELSFHVTGE 240 Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864 AYN+NTLT+ QR+TIKDL DLGLVKLQQGRKESWFIPTKL TN SRKQGFVV Sbjct: 241 AYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIPTKLATNLSMSLSDTSSRKQGFVV 300 Query: 863 VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684 VETNFR YAYS+SKLHCEILRLFSRVEYQLPNLIVGAITKE+LY AFENGIT+EQIISFL Sbjct: 301 VETNFRLYAYSSSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGITAEQIISFL 360 Query: 683 QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504 QQNAHPRVAE+TP+VPENVTDQIRLWE DLNRVE PSH YDEFPSRDVFE++CD+AR+ Sbjct: 361 QQNAHPRVAERTPAVPENVTDQIRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREY 420 Query: 503 GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411 GGLLWEDSKKM LVVKAEIH+ MREYLR K Sbjct: 421 GGLLWEDSKKMRLVVKAEIHLHMREYLRRSK 451 >ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis sativus] Length = 451 Score = 724 bits (1868), Expect = 0.0 Identities = 352/451 (78%), Positives = 411/451 (91%) Frame = -1 Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584 MPQVKIIAKNFMDMVASLPA+KLD+LY+N FICEA+LRSLP LAKK+VLQ+L+ID V+ Sbjct: 1 MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60 Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404 KS+EEW+L DG SK++VAVDRL+QLRVF+E+ DRK++++YRLNP FQ NLQK L+HG VL Sbjct: 61 KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120 Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224 REPMPS+ITVRLP+LE+L+AYAL+QWECFLLQLI+S QAE+P++ SSS+MK+FQ+GLLS Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180 Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044 QR+KEAPRLT +GFQFLL++TNAQLWYIIREYISN+E+RGVDPADLISFLLELSFHVTGE Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240 Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864 AY+++TL+D QR IKDLADLGLVKLQQGRKESWFIPTKL TN SRK GFVV Sbjct: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300 Query: 863 VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684 VETNFR YAYSTSKLHCEILRLFSR+EYQLPNLIVGAITKE+LY AF+NGIT+EQI++FL Sbjct: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360 Query: 683 QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504 QQNAHPRVAE+ PSVPENVTDQIRLWE+DLNRV+ITP+HFYDEFPSR+VFE++CDYAR+ Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420 Query: 503 GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411 GLLWEDSK + LVVKA+IH MRE+LR QK Sbjct: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451 >ref|XP_002305144.1| predicted protein [Populus trichocarpa] gi|222848108|gb|EEE85655.1| predicted protein [Populus trichocarpa] Length = 449 Score = 723 bits (1867), Expect = 0.0 Identities = 357/451 (79%), Positives = 405/451 (89%) Frame = -1 Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584 MPQV+IIAKNFMDMVASLPA+KLD LY N FICEA+LRSLP LAKKYV+Q+LF D V+G Sbjct: 1 MPQVRIIAKNFMDMVASLPAMKLDTLYQNAFICEAILRSLPPLAKKYVVQILFFDGPVSG 60 Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404 K LE+W+L DG +KHRVA+DRL+QLR+F+E D+K++SSY+LN FQ NL+K+L +GGVL Sbjct: 61 KLLEQWVLADGVTKHRVAIDRLIQLRIFIEVSDKKRESSYKLNQTFQANLRKHLTNGGVL 120 Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224 PRE M + V+LP+LEELD YALEQWECFLL LISS QAE+PTS SSSMMKIFQRGLLS Sbjct: 121 PRETMAA--VVKLPSLEELDTYALEQWECFLLLLISSGQAEKPTSLSSSMMKIFQRGLLS 178 Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044 QR+++APRLT GFQFLL+DTNAQLWYIIREYI+NSE+RG +PADLISFLLELSFHVTGE Sbjct: 179 QRDRDAPRLTEGGFQFLLMDTNAQLWYIIREYITNSEERGTEPADLISFLLELSFHVTGE 238 Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864 AYN+NTLT+IQR+TIKDLA+LGLVKLQQGRKESWFIPTKL TN SRKQG+VV Sbjct: 239 AYNMNTLTEIQRNTIKDLAELGLVKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGYVV 298 Query: 863 VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684 VETNFR YAYS+SKLHCEILRLFS++EYQLPNLIVGAITKE+LYTAFENGITS+QIISFL Sbjct: 299 VETNFRLYAYSSSKLHCEILRLFSKIEYQLPNLIVGAITKESLYTAFENGITSDQIISFL 358 Query: 683 QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504 QQNAHPRVAE+ PSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRD FE++CD+AR+ Sbjct: 359 QQNAHPRVAERLPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDTFEAACDFAREW 418 Query: 503 GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411 GLLWEDSKKM +VVKAEIHM MRE+LR QK Sbjct: 419 NGLLWEDSKKMRVVVKAEIHMNMREFLRGQK 449 >ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis] gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative [Ricinus communis] Length = 451 Score = 722 bits (1864), Expect = 0.0 Identities = 356/451 (78%), Positives = 402/451 (89%) Frame = -1 Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584 MPQV+IIAKNFMDMVASLPA+KLDKLY N FIC+A+LRSLP LAKKYV+Q+L+ID V Sbjct: 1 MPQVRIIAKNFMDMVASLPAMKLDKLYTNPFICQAILRSLPPLAKKYVVQILYIDGPVAD 60 Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404 K+LEEWLL DG SKHRVA+DRL QLR+F E VDRKK+ SY+LNP FQ NLQK+L+ GGVL Sbjct: 61 KTLEEWLLPDGSSKHRVAIDRLTQLRIFTEIVDRKKEISYKLNPTFQTNLQKHLIDGGVL 120 Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224 P EP+ S+I VRLPTLEELD YAL QWECFLL LI+S AER T+FSSSMMKIFQRGLL+ Sbjct: 121 PGEPLASNIAVRLPTLEELDTYALGQWECFLLHLINSGHAERSTNFSSSMMKIFQRGLLT 180 Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044 QR+KEAPRLT +GFQFLL+DTNAQLWYIIREYISNSE+RG+D ADLISFLLELSFH+TGE Sbjct: 181 QRDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEERGLDSADLISFLLELSFHITGE 240 Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864 AYN+ LT+ QR+ IKDLADLGLVKLQQGRKESWFIPTKL TN SRKQGFVV Sbjct: 241 AYNMIMLTEFQRNMIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSSRKQGFVV 300 Query: 863 VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684 VETNFR YAYSTSKLHCEI+RLFSRVEYQLPNL+VGA+TKE+LY+AFENGIT+EQIISFL Sbjct: 301 VETNFRMYAYSTSKLHCEIMRLFSRVEYQLPNLVVGAMTKESLYSAFENGITAEQIISFL 360 Query: 683 QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504 QQNAHPRVAE+ PSVPENVTDQIRLWE+D+NRVE+TP+H YDEFPSRDVFE++C++ARD Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDMNRVEMTPAHLYDEFPSRDVFEAACNFARDW 420 Query: 503 GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411 GLLWEDSK+M +VVKAEIH+ MREYLR QK Sbjct: 421 NGLLWEDSKRMRMVVKAEIHLNMREYLRGQK 451 >ref|XP_003529318.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine max] Length = 451 Score = 700 bits (1806), Expect = 0.0 Identities = 345/451 (76%), Positives = 396/451 (87%) Frame = -1 Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584 MP+V+IIAKNFMDMVAS+PA+KLDKLY+N FICEA+LRS+P LAKKYV+Q+L IDV V Sbjct: 1 MPEVRIIAKNFMDMVASMPAMKLDKLYENGFICEAILRSVPPLAKKYVIQMLHIDVPVAA 60 Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404 K LEEW+L G SKHRVA+DRLVQLRVFLE+VDRK + +Y++NP FQ +LQK LV GG L Sbjct: 61 KLLEEWVLPAGVSKHRVAIDRLVQLRVFLEAVDRKNEKTYKVNPTFQRSLQKLLVQGGTL 120 Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224 PRE MPS+ITVRLPTLE L+AYALEQWECFLLQLIS SQ E+P + SSS+MK+FQR +LS Sbjct: 121 PRESMPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISSSLMKVFQRRILS 180 Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044 R+KEAP+LT +GFQFLL+DTNAQLWYIIREYISNSEDRGVD ADLISF+LELSFHV GE Sbjct: 181 HRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDAADLISFMLELSFHVIGE 240 Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864 AY+V+TLT QR+ I DLADLGLVK+QQGRK SWFIPTKL TN SRKQGFVV Sbjct: 241 AYSVDTLTSFQRTIINDLADLGLVKIQQGRKGSWFIPTKLATNLSMSLADSSSRKQGFVV 300 Query: 863 VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684 VETNFR YAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKE+LY+A+ENGIT+EQI++FL Sbjct: 301 VETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAYENGITAEQIVTFL 360 Query: 683 QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504 QQNAHPRVAE+ PSVPENVT+QIRLWEADLNRVE+T +++YDEFPSRDVFE +CD AR+ Sbjct: 361 QQNAHPRVAERVPSVPENVTEQIRLWEADLNRVEMTDTYYYDEFPSRDVFEGACDCAREW 420 Query: 503 GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411 GLLWEDSKKM +VVK E+H +R+YLR QK Sbjct: 421 NGLLWEDSKKMHMVVKTEVHPYVRDYLRRQK 451