BLASTX nr result

ID: Coptis24_contig00020727 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020727
         (1859 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]   756   0.0  
ref|XP_004134713.1| PREDICTED: general transcription factor IIH ...   724   0.0  
ref|XP_002305144.1| predicted protein [Populus trichocarpa] gi|2...   723   0.0  
ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus commun...   722   0.0  
ref|XP_003529318.1| PREDICTED: general transcription factor IIH ...   700   0.0  

>emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
          Length = 451

 Score =  756 bits (1951), Expect = 0.0
 Identities = 370/451 (82%), Positives = 414/451 (91%)
 Frame = -1

Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584
            MPQVKIIAKNFMDMVASLPA+KLD LY NTFICEA+LRSLP LAKKY+LQ+L+IDV VT 
Sbjct: 1    MPQVKIIAKNFMDMVASLPAMKLDALYHNTFICEAILRSLPPLAKKYILQMLYIDVPVTA 60

Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404
            K++EEW+L DGFSKHRVA+DRL+QLRVF E+ DRKK++SYRLNP FQ NLQK+L++GGVL
Sbjct: 61   KAMEEWVLADGFSKHRVAIDRLIQLRVFTETSDRKKETSYRLNPTFQTNLQKHLIYGGVL 120

Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224
            PREPMPS+ITVRLP+L++L+AYAL QWECFLLQLISS+Q E+ T+FSSS+MK+FQRGLL+
Sbjct: 121  PREPMPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSLMKVFQRGLLT 180

Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044
            QREKEAPRLT +GFQFLL+DTNAQLWYI+REYISNSE+RGVDPADLISFLLELSFHVTGE
Sbjct: 181  QREKEAPRLTESGFQFLLMDTNAQLWYIMREYISNSEERGVDPADLISFLLELSFHVTGE 240

Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864
            AYN+NTLT+ QR+TIKDL DLGLVKLQQGRKESWFIPTKL TN         SRKQGFVV
Sbjct: 241  AYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIPTKLATNLSMSLSDTSSRKQGFVV 300

Query: 863  VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684
            VETNFR YAYS+SKLHCEILRLFSRVEYQLPNLIVGAITKE+LY AFENGIT+EQIISFL
Sbjct: 301  VETNFRLYAYSSSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGITAEQIISFL 360

Query: 683  QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504
            QQNAHPRVAE+TP+VPENVTDQIRLWE DLNRVE  PSH YDEFPSRDVFE++CD+AR+ 
Sbjct: 361  QQNAHPRVAERTPAVPENVTDQIRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREY 420

Query: 503  GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411
            GGLLWEDSKKM LVVKAEIH+ MREYLR  K
Sbjct: 421  GGLLWEDSKKMRLVVKAEIHLHMREYLRRSK 451


>ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis
            sativus]
          Length = 451

 Score =  724 bits (1868), Expect = 0.0
 Identities = 352/451 (78%), Positives = 411/451 (91%)
 Frame = -1

Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584
            MPQVKIIAKNFMDMVASLPA+KLD+LY+N FICEA+LRSLP LAKK+VLQ+L+ID  V+ 
Sbjct: 1    MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60

Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404
            KS+EEW+L DG SK++VAVDRL+QLRVF+E+ DRK++++YRLNP FQ NLQK L+HG VL
Sbjct: 61   KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224
             REPMPS+ITVRLP+LE+L+AYAL+QWECFLLQLI+S QAE+P++ SSS+MK+FQ+GLLS
Sbjct: 121  AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044
            QR+KEAPRLT +GFQFLL++TNAQLWYIIREYISN+E+RGVDPADLISFLLELSFHVTGE
Sbjct: 181  QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864
            AY+++TL+D QR  IKDLADLGLVKLQQGRKESWFIPTKL TN         SRK GFVV
Sbjct: 241  AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300

Query: 863  VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684
            VETNFR YAYSTSKLHCEILRLFSR+EYQLPNLIVGAITKE+LY AF+NGIT+EQI++FL
Sbjct: 301  VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360

Query: 683  QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504
            QQNAHPRVAE+ PSVPENVTDQIRLWE+DLNRV+ITP+HFYDEFPSR+VFE++CDYAR+ 
Sbjct: 361  QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 503  GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411
             GLLWEDSK + LVVKA+IH  MRE+LR QK
Sbjct: 421  NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451


>ref|XP_002305144.1| predicted protein [Populus trichocarpa] gi|222848108|gb|EEE85655.1|
            predicted protein [Populus trichocarpa]
          Length = 449

 Score =  723 bits (1867), Expect = 0.0
 Identities = 357/451 (79%), Positives = 405/451 (89%)
 Frame = -1

Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584
            MPQV+IIAKNFMDMVASLPA+KLD LY N FICEA+LRSLP LAKKYV+Q+LF D  V+G
Sbjct: 1    MPQVRIIAKNFMDMVASLPAMKLDTLYQNAFICEAILRSLPPLAKKYVVQILFFDGPVSG 60

Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404
            K LE+W+L DG +KHRVA+DRL+QLR+F+E  D+K++SSY+LN  FQ NL+K+L +GGVL
Sbjct: 61   KLLEQWVLADGVTKHRVAIDRLIQLRIFIEVSDKKRESSYKLNQTFQANLRKHLTNGGVL 120

Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224
            PRE M +   V+LP+LEELD YALEQWECFLL LISS QAE+PTS SSSMMKIFQRGLLS
Sbjct: 121  PRETMAA--VVKLPSLEELDTYALEQWECFLLLLISSGQAEKPTSLSSSMMKIFQRGLLS 178

Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044
            QR+++APRLT  GFQFLL+DTNAQLWYIIREYI+NSE+RG +PADLISFLLELSFHVTGE
Sbjct: 179  QRDRDAPRLTEGGFQFLLMDTNAQLWYIIREYITNSEERGTEPADLISFLLELSFHVTGE 238

Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864
            AYN+NTLT+IQR+TIKDLA+LGLVKLQQGRKESWFIPTKL TN         SRKQG+VV
Sbjct: 239  AYNMNTLTEIQRNTIKDLAELGLVKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGYVV 298

Query: 863  VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684
            VETNFR YAYS+SKLHCEILRLFS++EYQLPNLIVGAITKE+LYTAFENGITS+QIISFL
Sbjct: 299  VETNFRLYAYSSSKLHCEILRLFSKIEYQLPNLIVGAITKESLYTAFENGITSDQIISFL 358

Query: 683  QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504
            QQNAHPRVAE+ PSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRD FE++CD+AR+ 
Sbjct: 359  QQNAHPRVAERLPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDTFEAACDFAREW 418

Query: 503  GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411
             GLLWEDSKKM +VVKAEIHM MRE+LR QK
Sbjct: 419  NGLLWEDSKKMRVVVKAEIHMNMREFLRGQK 449


>ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
            gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative
            [Ricinus communis]
          Length = 451

 Score =  722 bits (1864), Expect = 0.0
 Identities = 356/451 (78%), Positives = 402/451 (89%)
 Frame = -1

Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584
            MPQV+IIAKNFMDMVASLPA+KLDKLY N FIC+A+LRSLP LAKKYV+Q+L+ID  V  
Sbjct: 1    MPQVRIIAKNFMDMVASLPAMKLDKLYTNPFICQAILRSLPPLAKKYVVQILYIDGPVAD 60

Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404
            K+LEEWLL DG SKHRVA+DRL QLR+F E VDRKK+ SY+LNP FQ NLQK+L+ GGVL
Sbjct: 61   KTLEEWLLPDGSSKHRVAIDRLTQLRIFTEIVDRKKEISYKLNPTFQTNLQKHLIDGGVL 120

Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224
            P EP+ S+I VRLPTLEELD YAL QWECFLL LI+S  AER T+FSSSMMKIFQRGLL+
Sbjct: 121  PGEPLASNIAVRLPTLEELDTYALGQWECFLLHLINSGHAERSTNFSSSMMKIFQRGLLT 180

Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044
            QR+KEAPRLT +GFQFLL+DTNAQLWYIIREYISNSE+RG+D ADLISFLLELSFH+TGE
Sbjct: 181  QRDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEERGLDSADLISFLLELSFHITGE 240

Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864
            AYN+  LT+ QR+ IKDLADLGLVKLQQGRKESWFIPTKL TN         SRKQGFVV
Sbjct: 241  AYNMIMLTEFQRNMIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSSRKQGFVV 300

Query: 863  VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684
            VETNFR YAYSTSKLHCEI+RLFSRVEYQLPNL+VGA+TKE+LY+AFENGIT+EQIISFL
Sbjct: 301  VETNFRMYAYSTSKLHCEIMRLFSRVEYQLPNLVVGAMTKESLYSAFENGITAEQIISFL 360

Query: 683  QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504
            QQNAHPRVAE+ PSVPENVTDQIRLWE+D+NRVE+TP+H YDEFPSRDVFE++C++ARD 
Sbjct: 361  QQNAHPRVAERIPSVPENVTDQIRLWESDMNRVEMTPAHLYDEFPSRDVFEAACNFARDW 420

Query: 503  GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411
             GLLWEDSK+M +VVKAEIH+ MREYLR QK
Sbjct: 421  NGLLWEDSKRMRMVVKAEIHLNMREYLRGQK 451


>ref|XP_003529318.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
            max]
          Length = 451

 Score =  700 bits (1806), Expect = 0.0
 Identities = 345/451 (76%), Positives = 396/451 (87%)
 Frame = -1

Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584
            MP+V+IIAKNFMDMVAS+PA+KLDKLY+N FICEA+LRS+P LAKKYV+Q+L IDV V  
Sbjct: 1    MPEVRIIAKNFMDMVASMPAMKLDKLYENGFICEAILRSVPPLAKKYVIQMLHIDVPVAA 60

Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404
            K LEEW+L  G SKHRVA+DRLVQLRVFLE+VDRK + +Y++NP FQ +LQK LV GG L
Sbjct: 61   KLLEEWVLPAGVSKHRVAIDRLVQLRVFLEAVDRKNEKTYKVNPTFQRSLQKLLVQGGTL 120

Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224
            PRE MPS+ITVRLPTLE L+AYALEQWECFLLQLIS SQ E+P + SSS+MK+FQR +LS
Sbjct: 121  PRESMPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISSSLMKVFQRRILS 180

Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044
             R+KEAP+LT +GFQFLL+DTNAQLWYIIREYISNSEDRGVD ADLISF+LELSFHV GE
Sbjct: 181  HRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDAADLISFMLELSFHVIGE 240

Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864
            AY+V+TLT  QR+ I DLADLGLVK+QQGRK SWFIPTKL TN         SRKQGFVV
Sbjct: 241  AYSVDTLTSFQRTIINDLADLGLVKIQQGRKGSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 863  VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684
            VETNFR YAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKE+LY+A+ENGIT+EQI++FL
Sbjct: 301  VETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAYENGITAEQIVTFL 360

Query: 683  QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504
            QQNAHPRVAE+ PSVPENVT+QIRLWEADLNRVE+T +++YDEFPSRDVFE +CD AR+ 
Sbjct: 361  QQNAHPRVAERVPSVPENVTEQIRLWEADLNRVEMTDTYYYDEFPSRDVFEGACDCAREW 420

Query: 503  GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411
             GLLWEDSKKM +VVK E+H  +R+YLR QK
Sbjct: 421  NGLLWEDSKKMHMVVKTEVHPYVRDYLRRQK 451


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