BLASTX nr result
ID: Coptis24_contig00020727
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00020727
(1859 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera] 756 0.0
ref|XP_004134713.1| PREDICTED: general transcription factor IIH ... 724 0.0
ref|XP_002305144.1| predicted protein [Populus trichocarpa] gi|2... 723 0.0
ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus commun... 722 0.0
ref|XP_003529318.1| PREDICTED: general transcription factor IIH ... 700 0.0
>emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
Length = 451
Score = 756 bits (1951), Expect = 0.0
Identities = 370/451 (82%), Positives = 414/451 (91%)
Frame = -1
Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584
MPQVKIIAKNFMDMVASLPA+KLD LY NTFICEA+LRSLP LAKKY+LQ+L+IDV VT
Sbjct: 1 MPQVKIIAKNFMDMVASLPAMKLDALYHNTFICEAILRSLPPLAKKYILQMLYIDVPVTA 60
Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404
K++EEW+L DGFSKHRVA+DRL+QLRVF E+ DRKK++SYRLNP FQ NLQK+L++GGVL
Sbjct: 61 KAMEEWVLADGFSKHRVAIDRLIQLRVFTETSDRKKETSYRLNPTFQTNLQKHLIYGGVL 120
Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224
PREPMPS+ITVRLP+L++L+AYAL QWECFLLQLISS+Q E+ T+FSSS+MK+FQRGLL+
Sbjct: 121 PREPMPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSLMKVFQRGLLT 180
Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044
QREKEAPRLT +GFQFLL+DTNAQLWYI+REYISNSE+RGVDPADLISFLLELSFHVTGE
Sbjct: 181 QREKEAPRLTESGFQFLLMDTNAQLWYIMREYISNSEERGVDPADLISFLLELSFHVTGE 240
Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864
AYN+NTLT+ QR+TIKDL DLGLVKLQQGRKESWFIPTKL TN SRKQGFVV
Sbjct: 241 AYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIPTKLATNLSMSLSDTSSRKQGFVV 300
Query: 863 VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684
VETNFR YAYS+SKLHCEILRLFSRVEYQLPNLIVGAITKE+LY AFENGIT+EQIISFL
Sbjct: 301 VETNFRLYAYSSSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGITAEQIISFL 360
Query: 683 QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504
QQNAHPRVAE+TP+VPENVTDQIRLWE DLNRVE PSH YDEFPSRDVFE++CD+AR+
Sbjct: 361 QQNAHPRVAERTPAVPENVTDQIRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREY 420
Query: 503 GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411
GGLLWEDSKKM LVVKAEIH+ MREYLR K
Sbjct: 421 GGLLWEDSKKMRLVVKAEIHLHMREYLRRSK 451
>ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis
sativus]
Length = 451
Score = 724 bits (1868), Expect = 0.0
Identities = 352/451 (78%), Positives = 411/451 (91%)
Frame = -1
Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584
MPQVKIIAKNFMDMVASLPA+KLD+LY+N FICEA+LRSLP LAKK+VLQ+L+ID V+
Sbjct: 1 MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404
KS+EEW+L DG SK++VAVDRL+QLRVF+E+ DRK++++YRLNP FQ NLQK L+HG VL
Sbjct: 61 KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224
REPMPS+ITVRLP+LE+L+AYAL+QWECFLLQLI+S QAE+P++ SSS+MK+FQ+GLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044
QR+KEAPRLT +GFQFLL++TNAQLWYIIREYISN+E+RGVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240
Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864
AY+++TL+D QR IKDLADLGLVKLQQGRKESWFIPTKL TN SRK GFVV
Sbjct: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300
Query: 863 VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684
VETNFR YAYSTSKLHCEILRLFSR+EYQLPNLIVGAITKE+LY AF+NGIT+EQI++FL
Sbjct: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360
Query: 683 QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504
QQNAHPRVAE+ PSVPENVTDQIRLWE+DLNRV+ITP+HFYDEFPSR+VFE++CDYAR+
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420
Query: 503 GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411
GLLWEDSK + LVVKA+IH MRE+LR QK
Sbjct: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451
>ref|XP_002305144.1| predicted protein [Populus trichocarpa] gi|222848108|gb|EEE85655.1|
predicted protein [Populus trichocarpa]
Length = 449
Score = 723 bits (1867), Expect = 0.0
Identities = 357/451 (79%), Positives = 405/451 (89%)
Frame = -1
Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584
MPQV+IIAKNFMDMVASLPA+KLD LY N FICEA+LRSLP LAKKYV+Q+LF D V+G
Sbjct: 1 MPQVRIIAKNFMDMVASLPAMKLDTLYQNAFICEAILRSLPPLAKKYVVQILFFDGPVSG 60
Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404
K LE+W+L DG +KHRVA+DRL+QLR+F+E D+K++SSY+LN FQ NL+K+L +GGVL
Sbjct: 61 KLLEQWVLADGVTKHRVAIDRLIQLRIFIEVSDKKRESSYKLNQTFQANLRKHLTNGGVL 120
Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224
PRE M + V+LP+LEELD YALEQWECFLL LISS QAE+PTS SSSMMKIFQRGLLS
Sbjct: 121 PRETMAA--VVKLPSLEELDTYALEQWECFLLLLISSGQAEKPTSLSSSMMKIFQRGLLS 178
Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044
QR+++APRLT GFQFLL+DTNAQLWYIIREYI+NSE+RG +PADLISFLLELSFHVTGE
Sbjct: 179 QRDRDAPRLTEGGFQFLLMDTNAQLWYIIREYITNSEERGTEPADLISFLLELSFHVTGE 238
Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864
AYN+NTLT+IQR+TIKDLA+LGLVKLQQGRKESWFIPTKL TN SRKQG+VV
Sbjct: 239 AYNMNTLTEIQRNTIKDLAELGLVKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGYVV 298
Query: 863 VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684
VETNFR YAYS+SKLHCEILRLFS++EYQLPNLIVGAITKE+LYTAFENGITS+QIISFL
Sbjct: 299 VETNFRLYAYSSSKLHCEILRLFSKIEYQLPNLIVGAITKESLYTAFENGITSDQIISFL 358
Query: 683 QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504
QQNAHPRVAE+ PSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRD FE++CD+AR+
Sbjct: 359 QQNAHPRVAERLPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDTFEAACDFAREW 418
Query: 503 GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411
GLLWEDSKKM +VVKAEIHM MRE+LR QK
Sbjct: 419 NGLLWEDSKKMRVVVKAEIHMNMREFLRGQK 449
>ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative
[Ricinus communis]
Length = 451
Score = 722 bits (1864), Expect = 0.0
Identities = 356/451 (78%), Positives = 402/451 (89%)
Frame = -1
Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584
MPQV+IIAKNFMDMVASLPA+KLDKLY N FIC+A+LRSLP LAKKYV+Q+L+ID V
Sbjct: 1 MPQVRIIAKNFMDMVASLPAMKLDKLYTNPFICQAILRSLPPLAKKYVVQILYIDGPVAD 60
Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404
K+LEEWLL DG SKHRVA+DRL QLR+F E VDRKK+ SY+LNP FQ NLQK+L+ GGVL
Sbjct: 61 KTLEEWLLPDGSSKHRVAIDRLTQLRIFTEIVDRKKEISYKLNPTFQTNLQKHLIDGGVL 120
Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224
P EP+ S+I VRLPTLEELD YAL QWECFLL LI+S AER T+FSSSMMKIFQRGLL+
Sbjct: 121 PGEPLASNIAVRLPTLEELDTYALGQWECFLLHLINSGHAERSTNFSSSMMKIFQRGLLT 180
Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044
QR+KEAPRLT +GFQFLL+DTNAQLWYIIREYISNSE+RG+D ADLISFLLELSFH+TGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEERGLDSADLISFLLELSFHITGE 240
Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864
AYN+ LT+ QR+ IKDLADLGLVKLQQGRKESWFIPTKL TN SRKQGFVV
Sbjct: 241 AYNMIMLTEFQRNMIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSSRKQGFVV 300
Query: 863 VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684
VETNFR YAYSTSKLHCEI+RLFSRVEYQLPNL+VGA+TKE+LY+AFENGIT+EQIISFL
Sbjct: 301 VETNFRMYAYSTSKLHCEIMRLFSRVEYQLPNLVVGAMTKESLYSAFENGITAEQIISFL 360
Query: 683 QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504
QQNAHPRVAE+ PSVPENVTDQIRLWE+D+NRVE+TP+H YDEFPSRDVFE++C++ARD
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDMNRVEMTPAHLYDEFPSRDVFEAACNFARDW 420
Query: 503 GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411
GLLWEDSK+M +VVKAEIH+ MREYLR QK
Sbjct: 421 NGLLWEDSKRMRMVVKAEIHLNMREYLRGQK 451
>ref|XP_003529318.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
max]
Length = 451
Score = 700 bits (1806), Expect = 0.0
Identities = 345/451 (76%), Positives = 396/451 (87%)
Frame = -1
Query: 1763 MPQVKIIAKNFMDMVASLPALKLDKLYDNTFICEAVLRSLPALAKKYVLQLLFIDVTVTG 1584
MP+V+IIAKNFMDMVAS+PA+KLDKLY+N FICEA+LRS+P LAKKYV+Q+L IDV V
Sbjct: 1 MPEVRIIAKNFMDMVASMPAMKLDKLYENGFICEAILRSVPPLAKKYVIQMLHIDVPVAA 60
Query: 1583 KSLEEWLLQDGFSKHRVAVDRLVQLRVFLESVDRKKDSSYRLNPKFQINLQKYLVHGGVL 1404
K LEEW+L G SKHRVA+DRLVQLRVFLE+VDRK + +Y++NP FQ +LQK LV GG L
Sbjct: 61 KLLEEWVLPAGVSKHRVAIDRLVQLRVFLEAVDRKNEKTYKVNPTFQRSLQKLLVQGGTL 120
Query: 1403 PREPMPSSITVRLPTLEELDAYALEQWECFLLQLISSSQAERPTSFSSSMMKIFQRGLLS 1224
PRE MPS+ITVRLPTLE L+AYALEQWECFLLQLIS SQ E+P + SSS+MK+FQR +LS
Sbjct: 121 PRESMPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISSSLMKVFQRRILS 180
Query: 1223 QREKEAPRLTVNGFQFLLLDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVTGE 1044
R+KEAP+LT +GFQFLL+DTNAQLWYIIREYISNSEDRGVD ADLISF+LELSFHV GE
Sbjct: 181 HRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDAADLISFMLELSFHVIGE 240
Query: 1043 AYNVNTLTDIQRSTIKDLADLGLVKLQQGRKESWFIPTKLVTNXXXXXXXXXSRKQGFVV 864
AY+V+TLT QR+ I DLADLGLVK+QQGRK SWFIPTKL TN SRKQGFVV
Sbjct: 241 AYSVDTLTSFQRTIINDLADLGLVKIQQGRKGSWFIPTKLATNLSMSLADSSSRKQGFVV 300
Query: 863 VETNFRTYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKENLYTAFENGITSEQIISFL 684
VETNFR YAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKE+LY+A+ENGIT+EQI++FL
Sbjct: 301 VETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAYENGITAEQIVTFL 360
Query: 683 QQNAHPRVAEKTPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDVFESSCDYARDN 504
QQNAHPRVAE+ PSVPENVT+QIRLWEADLNRVE+T +++YDEFPSRDVFE +CD AR+
Sbjct: 361 QQNAHPRVAERVPSVPENVTEQIRLWEADLNRVEMTDTYYYDEFPSRDVFEGACDCAREW 420
Query: 503 GGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 411
GLLWEDSKKM +VVK E+H +R+YLR QK
Sbjct: 421 NGLLWEDSKKMHMVVKTEVHPYVRDYLRRQK 451