BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020701
         (828 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19279.3| unnamed protein product [Vitis vinifera]              246   7e-68
ref|XP_002285663.1| PREDICTED: double-stranded RNA-binding prote...   246   7e-68
ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding prote...   240   2e-65
ref|XP_004152741.1| PREDICTED: double-stranded RNA-binding prote...   237   1e-64
ref|XP_003523789.1| PREDICTED: double-stranded RNA-binding prote...   239   3e-64

>emb|CBI19279.3| unnamed protein product [Vitis vinifera]
          Length = 415

 Score =  246 bits (629), Expect(2) = 7e-68
 Identities = 120/154 (77%), Positives = 136/154 (88%)
 Frame = -1

Query: 726 MSITNGFAGVSNCYVFKSRLQEYAQKGALLSPVYETTKEGPSHEPSFRSTVTVNNVSYDS 547
           MS  +GFAGVSNCYVFKSRLQEYAQK  L +P+Y+T KEGP H PSF+STV VN+V YDS
Sbjct: 1   MSSNDGFAGVSNCYVFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDS 60

Query: 546 LPGFSNRKAAEQSAAEVALMELTKSGNINKSISHPVQETGLCKNLLQEYAQKMNYAIPSY 367
           LPGFSNRKAAEQSAAEVAL+EL KSGN+ + IS PV ETGLCKNLLQEYAQKMNYAIP Y
Sbjct: 61  LPGFSNRKAAEQSAAEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMY 120

Query: 366 VCRKDDAPGRMSFYSCTVDIGGIQYIGAAARTKK 265
           VC+KD++PGR + +SCTV+IGGI+YIGAAARTKK
Sbjct: 121 VCQKDESPGRAASFSCTVEIGGIRYIGAAARTKK 154



 Score = 37.7 bits (86), Expect(2) = 7e-68
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = -2

Query: 200 RTALLAIQSNPNGAEAKRSGSCQLTVLPSKRE-PVIKKEEKPLK 72
           RTALLAI++N +G   K  G+ QLTV+P K++ P     ++P K
Sbjct: 162 RTALLAIRANTDGVGEKSIGNTQLTVIPGKKKGPESGNPDEPAK 205


>ref|XP_002285663.1| PREDICTED: double-stranded RNA-binding protein 1 [Vitis vinifera]
           gi|147781065|emb|CAN68128.1| hypothetical protein
           VITISV_043706 [Vitis vinifera]
          Length = 400

 Score =  246 bits (629), Expect(2) = 7e-68
 Identities = 120/154 (77%), Positives = 136/154 (88%)
 Frame = -1

Query: 726 MSITNGFAGVSNCYVFKSRLQEYAQKGALLSPVYETTKEGPSHEPSFRSTVTVNNVSYDS 547
           MS  +GFAGVSNCYVFKSRLQEYAQK  L +P+Y+T KEGP H PSF+STV VN+V YDS
Sbjct: 1   MSSNDGFAGVSNCYVFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDS 60

Query: 546 LPGFSNRKAAEQSAAEVALMELTKSGNINKSISHPVQETGLCKNLLQEYAQKMNYAIPSY 367
           LPGFSNRKAAEQSAAEVAL+EL KSGN+ + IS PV ETGLCKNLLQEYAQKMNYAIP Y
Sbjct: 61  LPGFSNRKAAEQSAAEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMY 120

Query: 366 VCRKDDAPGRMSFYSCTVDIGGIQYIGAAARTKK 265
           VC+KD++PGR + +SCTV+IGGI+YIGAAARTKK
Sbjct: 121 VCQKDESPGRAASFSCTVEIGGIRYIGAAARTKK 154



 Score = 37.7 bits (86), Expect(2) = 7e-68
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = -2

Query: 200 RTALLAIQSNPNGAEAKRSGSCQLTVLPSKRE-PVIKKEEKPLK 72
           RTALLAI++N +G   K  G+ QLTV+P K++ P     ++P K
Sbjct: 162 RTALLAIRANTDGVGEKSIGNTQLTVIPGKKKGPESGNPDEPAK 205


>ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
           sativus]
          Length = 351

 Score =  240 bits (612), Expect(2) = 2e-65
 Identities = 117/154 (75%), Positives = 131/154 (85%)
 Frame = -1

Query: 726 MSITNGFAGVSNCYVFKSRLQEYAQKGALLSPVYETTKEGPSHEPSFRSTVTVNNVSYDS 547
           M   + F GVSNCYVFKSRLQEYAQK  L +PVYET KEGPSHEP+F STV VN+V YDS
Sbjct: 1   MPAKDNFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDS 60

Query: 546 LPGFSNRKAAEQSAAEVALMELTKSGNINKSISHPVQETGLCKNLLQEYAQKMNYAIPSY 367
           LPGFSNRKAAEQSAAEVALMEL+KS ++N  +S PV ETGLCKNLLQEYAQKMN+AIP Y
Sbjct: 61  LPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLY 120

Query: 366 VCRKDDAPGRMSFYSCTVDIGGIQYIGAAARTKK 265
            C+KDD PGR S +SCTV+IGGI+YIGA A+TKK
Sbjct: 121 QCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKK 154



 Score = 36.2 bits (82), Expect(2) = 2e-65
 Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 200 RTALLAIQSNPNGAEAKRSGSCQLTVLPS-KREPVIKKEEKP 78
           RTALLAIQS PN    K     QLTV+PS KR+       KP
Sbjct: 162 RTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKP 203


>ref|XP_004152741.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
           sativus]
          Length = 344

 Score =  237 bits (604), Expect(2) = 1e-64
 Identities = 115/146 (78%), Positives = 128/146 (87%)
 Frame = -1

Query: 702 GVSNCYVFKSRLQEYAQKGALLSPVYETTKEGPSHEPSFRSTVTVNNVSYDSLPGFSNRK 523
           GVSNCYVFKSRLQEYAQK  L +PVYET KEGPSHEP+F STV VN+V YDSLPGFSNRK
Sbjct: 2   GVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRK 61

Query: 522 AAEQSAAEVALMELTKSGNINKSISHPVQETGLCKNLLQEYAQKMNYAIPSYVCRKDDAP 343
           AAEQSAAEVALMEL+KS ++N  +S PV ETGLCKNLLQEYAQKMN+AIP Y C+KDD P
Sbjct: 62  AAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGP 121

Query: 342 GRMSFYSCTVDIGGIQYIGAAARTKK 265
           GR S +SCTV+IGGI+YIGA A+TKK
Sbjct: 122 GRGSLFSCTVEIGGIRYIGAVAKTKK 147



 Score = 36.2 bits (82), Expect(2) = 1e-64
 Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 200 RTALLAIQSNPNGAEAKRSGSCQLTVLPS-KREPVIKKEEKP 78
           RTALLAIQS PN    K     QLTV+PS KR+       KP
Sbjct: 155 RTALLAIQSCPNSLSEKSVNQVQLTVIPSCKRKEAADCSVKP 196


>ref|XP_003523789.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
          Length = 359

 Score =  239 bits (609), Expect(2) = 3e-64
 Identities = 117/154 (75%), Positives = 128/154 (83%)
 Frame = -1

Query: 726 MSITNGFAGVSNCYVFKSRLQEYAQKGALLSPVYETTKEGPSHEPSFRSTVTVNNVSYDS 547
           M     F  VSNCYVFKSRLQEYAQK  L +PVYET KEGPSHEPSFRSTV VN+V YDS
Sbjct: 1   MPTNEDFQSVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDS 60

Query: 546 LPGFSNRKAAEQSAAEVALMELTKSGNINKSISHPVQETGLCKNLLQEYAQKMNYAIPSY 367
           LPGF NRKAAEQSAAEVAL+EL KS  +N+SI+ PV ETGLCKNLLQEYAQKMNYA+P Y
Sbjct: 61  LPGFFNRKAAEQSAAEVALVELVKSNAVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMY 120

Query: 366 VCRKDDAPGRMSFYSCTVDIGGIQYIGAAARTKK 265
            C+KD+ PGR S +SCTVDIGGI YIG AA+TKK
Sbjct: 121 QCKKDETPGRASVFSCTVDIGGILYIGGAAKTKK 154



 Score = 33.5 bits (75), Expect(2) = 3e-64
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = -2

Query: 200 RTALLAIQSNPNGAEAKRSGSCQLTVLPSKRE-----PVIKKEEKPLKP 69
           RTALLAIQS+ + A   + G  QLTVLP ++       +  +   P KP
Sbjct: 162 RTALLAIQSSASHASENQVGHPQLTVLPCRKRATSSVAIADENSNPPKP 210