BLASTX nr result
ID: Coptis24_contig00020694
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00020694 (314 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 49 5e-09 ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago trunca... 45 7e-08 gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia... 45 7e-08 ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 45 7e-08 ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su... 45 7e-08 >ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis vinifera] gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera] gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera] Length = 1193 Score = 48.9 bits (115), Expect(2) = 5e-09 Identities = 22/23 (95%), Positives = 22/23 (95%) Frame = -3 Query: 69 IVIRPESQHNPGRQSDFLETIYK 1 I IRPESQHNPGRQSDFLETIYK Sbjct: 66 IEIRPESQHNPGRQSDFLETIYK 88 Score = 36.2 bits (82), Expect(2) = 5e-09 Identities = 16/16 (100%), Positives = 16/16 (100%) Frame = -2 Query: 139 AWAVISAYFEEKGLVR 92 AWAVISAYFEEKGLVR Sbjct: 27 AWAVISAYFEEKGLVR 42 >ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula] gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula] Length = 1213 Score = 45.1 bits (105), Expect(2) = 7e-08 Identities = 20/23 (86%), Positives = 20/23 (86%) Frame = -3 Query: 69 IVIRPESQHNPGRQSDFLETIYK 1 I IRPESQHNPG QSDF ETIYK Sbjct: 68 IEIRPESQHNPGHQSDFAETIYK 90 Score = 36.2 bits (82), Expect(2) = 7e-08 Identities = 16/16 (100%), Positives = 16/16 (100%) Frame = -2 Query: 139 AWAVISAYFEEKGLVR 92 AWAVISAYFEEKGLVR Sbjct: 29 AWAVISAYFEEKGLVR 44 >gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida] Length = 1195 Score = 45.1 bits (105), Expect(2) = 7e-08 Identities = 20/23 (86%), Positives = 20/23 (86%) Frame = -3 Query: 69 IVIRPESQHNPGRQSDFLETIYK 1 I IRPESQHNPG QSDF ETIYK Sbjct: 68 IEIRPESQHNPGHQSDFAETIYK 90 Score = 36.2 bits (82), Expect(2) = 7e-08 Identities = 16/16 (100%), Positives = 16/16 (100%) Frame = -2 Query: 139 AWAVISAYFEEKGLVR 92 AWAVISAYFEEKGLVR Sbjct: 29 AWAVISAYFEEKGLVR 44 >ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis] gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis] Length = 1194 Score = 45.1 bits (105), Expect(2) = 7e-08 Identities = 20/23 (86%), Positives = 20/23 (86%) Frame = -3 Query: 69 IVIRPESQHNPGRQSDFLETIYK 1 I IRPESQHNPG QSDF ETIYK Sbjct: 67 IEIRPESQHNPGHQSDFAETIYK 89 Score = 36.2 bits (82), Expect(2) = 7e-08 Identities = 16/16 (100%), Positives = 16/16 (100%) Frame = -2 Query: 139 AWAVISAYFEEKGLVR 92 AWAVISAYFEEKGLVR Sbjct: 28 AWAVISAYFEEKGLVR 43 >ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine max] Length = 1193 Score = 45.1 bits (105), Expect(2) = 7e-08 Identities = 20/23 (86%), Positives = 20/23 (86%) Frame = -3 Query: 69 IVIRPESQHNPGRQSDFLETIYK 1 I IRPESQHNPG QSDF ETIYK Sbjct: 67 IEIRPESQHNPGHQSDFAETIYK 89 Score = 36.2 bits (82), Expect(2) = 7e-08 Identities = 16/16 (100%), Positives = 16/16 (100%) Frame = -2 Query: 139 AWAVISAYFEEKGLVR 92 AWAVISAYFEEKGLVR Sbjct: 28 AWAVISAYFEEKGLVR 43