BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020694
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...    49   5e-09
ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago trunca...    45   7e-08
gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia...    45   7e-08
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...    45   7e-08
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su...    45   7e-08

>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
           vinifera] gi|147841183|emb|CAN72948.1| hypothetical
           protein VITISV_033708 [Vitis vinifera]
           gi|302143287|emb|CBI21848.3| unnamed protein product
           [Vitis vinifera]
          Length = 1193

 Score = 48.9 bits (115), Expect(2) = 5e-09
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = -3

Query: 69  IVIRPESQHNPGRQSDFLETIYK 1
           I IRPESQHNPGRQSDFLETIYK
Sbjct: 66  IEIRPESQHNPGRQSDFLETIYK 88



 Score = 36.2 bits (82), Expect(2) = 5e-09
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -2

Query: 139 AWAVISAYFEEKGLVR 92
           AWAVISAYFEEKGLVR
Sbjct: 27  AWAVISAYFEEKGLVR 42


>ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
           gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase
           [Medicago truncatula]
          Length = 1213

 Score = 45.1 bits (105), Expect(2) = 7e-08
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = -3

Query: 69  IVIRPESQHNPGRQSDFLETIYK 1
           I IRPESQHNPG QSDF ETIYK
Sbjct: 68  IEIRPESQHNPGHQSDFAETIYK 90



 Score = 36.2 bits (82), Expect(2) = 7e-08
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -2

Query: 139 AWAVISAYFEEKGLVR 92
           AWAVISAYFEEKGLVR
Sbjct: 29  AWAVISAYFEEKGLVR 44


>gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score = 45.1 bits (105), Expect(2) = 7e-08
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = -3

Query: 69  IVIRPESQHNPGRQSDFLETIYK 1
           I IRPESQHNPG QSDF ETIYK
Sbjct: 68  IEIRPESQHNPGHQSDFAETIYK 90



 Score = 36.2 bits (82), Expect(2) = 7e-08
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -2

Query: 139 AWAVISAYFEEKGLVR 92
           AWAVISAYFEEKGLVR
Sbjct: 29  AWAVISAYFEEKGLVR 44


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 45.1 bits (105), Expect(2) = 7e-08
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = -3

Query: 69  IVIRPESQHNPGRQSDFLETIYK 1
           I IRPESQHNPG QSDF ETIYK
Sbjct: 67  IEIRPESQHNPGHQSDFAETIYK 89



 Score = 36.2 bits (82), Expect(2) = 7e-08
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -2

Query: 139 AWAVISAYFEEKGLVR 92
           AWAVISAYFEEKGLVR
Sbjct: 28  AWAVISAYFEEKGLVR 43


>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Glycine max]
          Length = 1193

 Score = 45.1 bits (105), Expect(2) = 7e-08
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = -3

Query: 69  IVIRPESQHNPGRQSDFLETIYK 1
           I IRPESQHNPG QSDF ETIYK
Sbjct: 67  IEIRPESQHNPGHQSDFAETIYK 89



 Score = 36.2 bits (82), Expect(2) = 7e-08
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -2

Query: 139 AWAVISAYFEEKGLVR 92
           AWAVISAYFEEKGLVR
Sbjct: 28  AWAVISAYFEEKGLVR 43