BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020682
         (449 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis tha...    49   3e-08
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]                     47   3e-08
emb|CAN77085.1| hypothetical protein VITISV_044282 [Vitis vinifera]    43   9e-08
emb|CAB46043.1| retrotransposon like protein [Arabidopsis thalia...    45   2e-07
emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera]    51   3e-07

>gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis thaliana]
           gi|225898008|dbj|BAH30336.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 1459

 Score = 48.5 bits (114), Expect(2) = 3e-08
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = -1

Query: 449 CFPWIRSYTTKKLQAQIKECIFIGYSPVQFLNPCLD 342
           CFPW+R YT  KL+ + K C+F+GYS  Q    CLD
Sbjct: 701 CFPWLRPYTRNKLEERSKRCVFLGYSLTQTAYLCLD 736



 Score = 34.3 bits (77), Expect(2) = 3e-08
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 343 IHTNRIYVSRHVIFNEKSFPFKSQI 269
           +  NR+Y SRHV+F+E ++PF + I
Sbjct: 737 VDNNRLYTSRHVMFDESTYPFAASI 761


>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
          Length = 1429

 Score = 46.6 bits (109), Expect(2) = 3e-08
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = -1

Query: 449 CFPWIRSYTTKKLQAQIKECIFIGYSPVQFLNPCLD 342
           C+PW+R Y T KL+A+   C+F+GYS  Q    CLD
Sbjct: 678 CYPWLRPYNTNKLEARSTMCVFLGYSLTQSAYLCLD 713



 Score = 35.8 bits (81), Expect(2) = 3e-08
 Identities = 17/23 (73%), Positives = 17/23 (73%)
 Frame = -2

Query: 343 IHTNRIYVSRHVIFNEKSFPFKS 275
           I TNRIY SRHV F E SFPF S
Sbjct: 714 IATNRIYTSRHVQFVESSFPFAS 736


>emb|CAN77085.1| hypothetical protein VITISV_044282 [Vitis vinifera]
          Length = 1520

 Score = 43.1 bits (100), Expect(2) = 9e-08
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -1

Query: 449 CFPWIRSYTTKKLQAQIKECIFIGYSPVQFLNPCLDPH 336
           C+PW+  Y T KLQ + + C+F+ YS  Q    CLD H
Sbjct: 558 CYPWLVPYRTNKLQPKSQPCVFLEYSLTQHAFKCLDLH 595



 Score = 37.7 bits (86), Expect(2) = 9e-08
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = -2

Query: 343 IHTNRIYVSRHVIFNEKSFPFKS 275
           +HT ++Y+SRHVIF+E  FPFK+
Sbjct: 594 LHTGKLYLSRHVIFDEHLFPFKN 616


>emb|CAB46043.1| retrotransposon like protein [Arabidopsis thaliana]
           gi|7268438|emb|CAB80958.1| retrotransposon like protein
           [Arabidopsis thaliana]
          Length = 1474

 Score = 45.4 bits (106), Expect(2) = 2e-07
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -1

Query: 449 CFPWIRSYTTKKLQAQIKECIFIGYSPVQFLNPCLD 342
           CFPW+R YT  KL+ + + C+F+GYS  Q    C D
Sbjct: 696 CFPWLRPYTHNKLEERSRRCVFLGYSLTQTAYLCFD 731



 Score = 34.7 bits (78), Expect(2) = 2e-07
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -2

Query: 343 IHTNRIYVSRHVIFNEKSFPFKSQISNLYSFHSI 242
           +   R+Y SRHV+F+E SFPF    SNL S +S+
Sbjct: 732 VEHKRLYTSRHVVFDEASFPF----SNLTSQNSL 761


>emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera]
          Length = 1112

 Score = 50.8 bits (120), Expect(2) = 3e-07
 Identities = 19/36 (52%), Positives = 26/36 (72%)
 Frame = -1

Query: 449 CFPWIRSYTTKKLQAQIKECIFIGYSPVQFLNPCLD 342
           C+PW+R YT+ KL+++   CIF+GYSP Q    CLD
Sbjct: 452 CYPWLRPYTSPKLESRSSPCIFVGYSPTQSAYLCLD 487



 Score = 28.5 bits (62), Expect(2) = 3e-07
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 337 TNRIYVSRHVIFNEKSFPFKSQISNL 260
           T R+Y SRHV F E  FPF +  ++L
Sbjct: 490 TARLYTSRHVHFVESIFPFVTSHTSL 515