BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020564
         (538 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T14570 cytochrome b559 component psbE - beet chloroplast gi...   185   4e-45
ref|XP_004162281.1| PREDICTED: LOW QUALITY PROTEIN: cytochrome b...   177   5e-44
gb|AAS46066.1| cytochrome b559 alpha chain [Oryza sativa Indica ...   176   4e-43
prf||1011228A cytochrome b559                                         172   2e-41
ref|YP_001004203.1| photosystem II cytochrome b559 alpha subunit...   171   8e-41

>pir||T14570 cytochrome b559 component psbE - beet chloroplast
           gi|860891|emb|CAA60967.1| PSII cytochome b559 alpha
           chain [Beta vulgaris subsp. vulgaris]
           gi|860897|emb|CAA60972.1| PSII cytochrome b599 alpha
           chain [Beta vulgaris subsp. vulgaris]
          Length = 118

 Score =  185 bits (469), Expect = 4e-45
 Identities = 91/93 (97%), Positives = 92/93 (98%)
 Frame = +2

Query: 230 LTVQEYVELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSP 409
           LTVQEYVELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSP
Sbjct: 26  LTVQEYVELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSP 85

Query: 410 RPNEYFTENRQGIPLITGRFDSLAQLDEFSRSF 508
           RPNEYFTE+RQGIPLITGRFDSL QLDEFSRSF
Sbjct: 86  RPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 118


>ref|XP_004162281.1| PREDICTED: LOW QUALITY PROTEIN: cytochrome b559 subunit alpha-like
           [Cucumis sativus]
          Length = 132

 Score =  177 bits (448), Expect(2) = 5e-44
 Identities = 89/95 (93%), Positives = 90/95 (94%)
 Frame = +2

Query: 224 PSLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFG 403
           P LTVQEYVEL MSGSTGERSFADIITSIRYWVIHS  IPSLFIAGWLFVSTGLAYDVFG
Sbjct: 39  PLLTVQEYVELGMSGSTGERSFADIITSIRYWVIHSX-IPSLFIAGWLFVSTGLAYDVFG 97

Query: 404 SPRPNEYFTENRQGIPLITGRFDSLAQLDEFSRSF 508
           SPRPNEYFTE+RQGIPLITGRFDSL QLDEFSRSF
Sbjct: 98  SPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 132



 Score = 26.2 bits (56), Expect(2) = 5e-44
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = +1

Query: 181 VVFDLLIPSFTESIPL 228
           V F LLI SFTESIPL
Sbjct: 25  VNFHLLISSFTESIPL 40


>gb|AAS46066.1| cytochrome b559 alpha chain [Oryza sativa Indica Group]
           gi|42795566|gb|AAS46132.1| cytochrome b559 alpha chain
           [Oryza sativa Japonica Group] gi|42795630|gb|AAS46195.1|
           cytochrome b559 alpha chain [Oryza sativa Japonica
           Group] gi|290790587|gb|ADD62847.1| photosystem II
           cytochrome b559 alpha subunit [Oryza sativa Japonica
           Group] gi|290790656|gb|ADD62915.1| photosystem II
           cytochrome b559 alpha subunit [Oryza meridionalis]
           gi|290790725|gb|ADD62983.1| photosystem II cytochrome
           b559 alpha subunit [Oryza australiensis]
           gi|290790794|gb|ADD63051.1| photosystem II cytochrome
           b559 alpha subunit [Potamophila parviflora]
           gi|290790861|gb|ADD63117.1| photosystem II cytochrome
           b559 alpha subunit [Microlaena stipoides]
          Length = 104

 Score =  176 bits (447), Expect(2) = 4e-43
 Identities = 87/95 (91%), Positives = 90/95 (94%)
 Frame = +2

Query: 224 PSLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFG 403
           P L VQ++ ELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFG
Sbjct: 10  PFLNVQKFGELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFG 69

Query: 404 SPRPNEYFTENRQGIPLITGRFDSLAQLDEFSRSF 508
           SPRPNEYFTE+RQGIPLIT RFDSL QLDEFSRSF
Sbjct: 70  SPRPNEYFTESRQGIPLITDRFDSLEQLDEFSRSF 104



 Score = 23.5 bits (49), Expect(2) = 4e-43
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 196 LIPSFTESIPLFD 234
           +IPSFTESIP  +
Sbjct: 1   MIPSFTESIPFLN 13


>prf||1011228A cytochrome b559
          Length = 122

 Score =  172 bits (437), Expect = 2e-41
 Identities = 87/93 (93%), Positives = 88/93 (94%)
 Frame = +2

Query: 260 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTENR 439
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTE+R
Sbjct: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 440 QGIPLITGRFDSLAQLDEFSRSF*EVPMTIDRT 538
           QGIPLITGRFDSL QLDEFSRSF    MTIDRT
Sbjct: 61  QGIPLITGRFDSLEQLDEFSRSF----MTIDRT 89


>ref|YP_001004203.1| photosystem II cytochrome b559 alpha subunit [Ranunculus
           macranthus] gi|229577771|ref|YP_002836107.1| photosystem
           II cytochrome b559 alpha subunit [Megaleranthis
           saniculifolia] gi|69217512|gb|AAZ04066.1| cytochrome
           b559 alpha chain [Ranunculus macranthus]
           gi|85540821|gb|ABC70773.1| photosystem II cytochrome
           b559 alpha subunit [Ranunculus macranthus]
           gi|226933899|gb|ACO92032.1| photosystem II cytochrome
           b559 alpha subunit [Megaleranthis saniculifolia]
          Length = 83

 Score =  171 bits (432), Expect = 8e-41
 Identities = 83/83 (100%), Positives = 83/83 (100%)
 Frame = +2

Query: 260 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTENR 439
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTENR
Sbjct: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTENR 60

Query: 440 QGIPLITGRFDSLAQLDEFSRSF 508
           QGIPLITGRFDSLAQLDEFSRSF
Sbjct: 61  QGIPLITGRFDSLAQLDEFSRSF 83