BLASTX nr result
ID: Coptis24_contig00020556
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00020556 (542 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004145484.1| PREDICTED: putative E3 ubiquitin-protein lig... 62 6e-11 ref|XP_002321798.1| predicted protein [Populus trichocarpa] gi|2... 49 5e-07 ref|XP_002332131.1| predicted protein [Populus trichocarpa] gi|2... 57 2e-06 >ref|XP_004145484.1| PREDICTED: putative E3 ubiquitin-protein ligase LIN-like [Cucumis sativus] gi|449527759|ref|XP_004170877.1| PREDICTED: putative E3 ubiquitin-protein ligase LIN-like [Cucumis sativus] Length = 863 Score = 62.0 bits (149), Expect(2) = 6e-11 Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 6/58 (10%) Frame = -2 Query: 367 MASLQQLLSEEGFE------RRKKTHPVWKTRITPDKSVALPIYICHDRRSFDFSKQK 212 MASLQ+LL+ EGFE RK + P ++R PD SV LPIYICHD+++ D SK+K Sbjct: 1 MASLQELLTREGFEGSNYPSTRKLSRPKGRSRTAPDDSVTLPIYICHDKKTIDSSKKK 58 Score = 30.0 bits (66), Expect(2) = 6e-11 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = -1 Query: 119 TSIFSSVKGTSLRAEKILVSRNELEIDEVAVKAVISILS 3 +S++SS + S+ S E IDE+A++AV+SILS Sbjct: 68 SSVYSSKRVGSVSETLPCKSMEEPAIDEIAIRAVVSILS 106 >ref|XP_002321798.1| predicted protein [Populus trichocarpa] gi|222868794|gb|EEF05925.1| predicted protein [Populus trichocarpa] Length = 961 Score = 49.3 bits (116), Expect(2) = 5e-07 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 8/67 (11%) Frame = -2 Query: 367 MASLQQLLSEEGFERRK--KTHPVWKTR---ITPDKSVALPIYICHDRRSFDFSKQ---K 212 MASL QLL+EEGFE R + K R I P++SV LPI++CHD++ SK+ K Sbjct: 1 MASLNQLLAEEGFEHRSFLRNRAQVKPRDRLIRPEESVILPIHVCHDQKRPHSSKKKTDK 60 Query: 211 SVSRQGS 191 + +R+GS Sbjct: 61 ASTRKGS 67 Score = 29.3 bits (64), Expect(2) = 5e-07 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%) Frame = -1 Query: 119 TSIFSSVK---GTSLRAEKILVSRNELEIDEVAVKAVISILS 3 +SIFSS + T K L+ + IDE+A++AV+SILS Sbjct: 67 SSIFSSRRVSSDTERLQSKSLLRGEDPAIDEIAIRAVVSILS 108 >ref|XP_002332131.1| predicted protein [Populus trichocarpa] gi|222875181|gb|EEF12312.1| predicted protein [Populus trichocarpa] Length = 980 Score = 56.6 bits (135), Expect = 2e-06 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 4/63 (6%) Frame = -2 Query: 367 MASLQQLLSEEGFERRKKTHPVWKTRIT-PDKSVALPIYICHDRRSFDFSKQKS---VSR 200 MASL Q+LSEEGFE RK + R+T P++SV LPI+ICHD++ F KQK+ +R Sbjct: 1 MASLHQMLSEEGFEHRKFLRS--RDRLTRPEESVILPIHICHDQKRFQSPKQKTDMGSTR 58 Query: 199 QGS 191 +GS Sbjct: 59 KGS 61