BLASTX nr result
ID: Coptis24_contig00020542
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00020542
(253 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containi... 124 6e-27
ref|XP_002318172.1| predicted protein [Populus trichocarpa] gi|2... 122 2e-26
ref|XP_002532091.1| pentatricopeptide repeat-containing protein,... 120 1e-25
ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containi... 113 1e-23
ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containi... 113 1e-23
>ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera] gi|296090299|emb|CBI40118.3| unnamed
protein product [Vitis vinifera]
Length = 618
Score = 124 bits (312), Expect = 6e-27
Identities = 57/83 (68%), Positives = 71/83 (85%)
Frame = +3
Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
YAQNG S+ AI+LF MR +G++PDKITL+GVLSA ASIGALD GKW+ YAS++GLQ++
Sbjct: 303 YAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQND 362
Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
+YV T LIDMYAKCG +DDALR+
Sbjct: 363 IYVSTALIDMYAKCGSLDDALRV 385
Score = 74.3 bits (181), Expect = 9e-12
Identities = 32/83 (38%), Positives = 51/83 (61%)
Frame = +3
Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
Y++ G + A+ LF +MR AG +PD++TL+ +L A +G L LG W+ + + + N
Sbjct: 202 YSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLN 261
Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
+VG+ LI MY KCG + A R+
Sbjct: 262 SFVGSALIGMYGKCGDLSSARRV 284
>ref|XP_002318172.1| predicted protein [Populus trichocarpa] gi|222858845|gb|EEE96392.1|
predicted protein [Populus trichocarpa]
Length = 617
Score = 122 bits (307), Expect = 2e-26
Identities = 57/83 (68%), Positives = 71/83 (85%)
Frame = +3
Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
YAQNGASN AI+LF+ MR AG PD++T+I VLSA ++IGALDLGKWV +AS+KGLQH+
Sbjct: 305 YAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHD 364
Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
VYV + LIDMYAKCG +DDA+R+
Sbjct: 365 VYVASALIDMYAKCGSLDDAVRV 387
Score = 79.7 bits (195), Expect = 2e-13
Identities = 36/83 (43%), Positives = 54/83 (65%)
Frame = +3
Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
Y++ G + AI LF +MR G +PD++TL+ VL A +G L LG+WV + +K ++ N
Sbjct: 204 YSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVN 263
Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
Y+G+ LIDMY KCG + A R+
Sbjct: 264 SYMGSALIDMYGKCGDLISARRV 286
>ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528238|gb|EEF30293.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 446
Score = 120 bits (300), Expect = 1e-25
Identities = 56/83 (67%), Positives = 71/83 (85%)
Frame = +3
Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
YAQNGAS+ A+ LF+ MR AG+ P++IT++ VLSA ASIGALDLGKWV YASQ+GLQH+
Sbjct: 304 YAQNGASDEAMTLFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHD 363
Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
VYV + L+DMYAKCG +D+ALR+
Sbjct: 364 VYVASALVDMYAKCGSLDNALRV 386
Score = 72.4 bits (176), Expect = 4e-11
Identities = 33/83 (39%), Positives = 48/83 (57%)
Frame = +3
Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
Y + G + A+ LF +MR G +P ++TL+ +L A +G L LGKWV K ++ N
Sbjct: 203 YTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKMELN 262
Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
Y + LIDMY KCG + A R+
Sbjct: 263 SYTASALIDMYGKCGDLMSARRV 285
>ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 113 bits (283), Expect = 1e-23
Identities = 55/83 (66%), Positives = 65/83 (78%)
Frame = +3
Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
YAQNG S AI LF DMR + PD+ITLIG+LSA ASIGALDLGK V YAS++G Q +
Sbjct: 304 YAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDD 363
Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
VYVGT L+DMYAKCG +D+A R+
Sbjct: 364 VYVGTALVDMYAKCGSLDNAFRV 386
Score = 67.4 bits (163), Expect = 1e-09
Identities = 31/83 (37%), Positives = 49/83 (59%)
Frame = +3
Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
Y++ + A+ LF +M AG P++++L+ VL A +G L LG WV E+ + + N
Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262
Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
++G+ LI MY KCG + A RI
Sbjct: 263 YFMGSALIHMYGKCGDLVSARRI 285
>ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 113 bits (283), Expect = 1e-23
Identities = 55/83 (66%), Positives = 65/83 (78%)
Frame = +3
Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
YAQNG S AI LF DMR + PD+ITLIG+LSA ASIGALDLGK V YAS++G Q +
Sbjct: 304 YAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDD 363
Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
VYVGT L+DMYAKCG +D+A R+
Sbjct: 364 VYVGTALVDMYAKCGSLDNAFRV 386
Score = 67.4 bits (163), Expect = 1e-09
Identities = 31/83 (37%), Positives = 49/83 (59%)
Frame = +3
Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
Y++ + A+ LF +M AG P++++L+ VL A +G L LG WV E+ + + N
Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262
Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
++G+ LI MY KCG + A RI
Sbjct: 263 YFMGSALIHMYGKCGDLVSARRI 285