BLASTX nr result
ID: Coptis24_contig00020542
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00020542 (253 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containi... 124 6e-27 ref|XP_002318172.1| predicted protein [Populus trichocarpa] gi|2... 122 2e-26 ref|XP_002532091.1| pentatricopeptide repeat-containing protein,... 120 1e-25 ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containi... 113 1e-23 ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containi... 113 1e-23 >ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Vitis vinifera] gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera] Length = 618 Score = 124 bits (312), Expect = 6e-27 Identities = 57/83 (68%), Positives = 71/83 (85%) Frame = +3 Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182 YAQNG S+ AI+LF MR +G++PDKITL+GVLSA ASIGALD GKW+ YAS++GLQ++ Sbjct: 303 YAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQND 362 Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251 +YV T LIDMYAKCG +DDALR+ Sbjct: 363 IYVSTALIDMYAKCGSLDDALRV 385 Score = 74.3 bits (181), Expect = 9e-12 Identities = 32/83 (38%), Positives = 51/83 (61%) Frame = +3 Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182 Y++ G + A+ LF +MR AG +PD++TL+ +L A +G L LG W+ + + + N Sbjct: 202 YSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLN 261 Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251 +VG+ LI MY KCG + A R+ Sbjct: 262 SFVGSALIGMYGKCGDLSSARRV 284 >ref|XP_002318172.1| predicted protein [Populus trichocarpa] gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa] Length = 617 Score = 122 bits (307), Expect = 2e-26 Identities = 57/83 (68%), Positives = 71/83 (85%) Frame = +3 Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182 YAQNGASN AI+LF+ MR AG PD++T+I VLSA ++IGALDLGKWV +AS+KGLQH+ Sbjct: 305 YAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHD 364 Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251 VYV + LIDMYAKCG +DDA+R+ Sbjct: 365 VYVASALIDMYAKCGSLDDAVRV 387 Score = 79.7 bits (195), Expect = 2e-13 Identities = 36/83 (43%), Positives = 54/83 (65%) Frame = +3 Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182 Y++ G + AI LF +MR G +PD++TL+ VL A +G L LG+WV + +K ++ N Sbjct: 204 YSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVN 263 Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251 Y+G+ LIDMY KCG + A R+ Sbjct: 264 SYMGSALIDMYGKCGDLISARRV 286 >ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 446 Score = 120 bits (300), Expect = 1e-25 Identities = 56/83 (67%), Positives = 71/83 (85%) Frame = +3 Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182 YAQNGAS+ A+ LF+ MR AG+ P++IT++ VLSA ASIGALDLGKWV YASQ+GLQH+ Sbjct: 304 YAQNGASDEAMTLFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHD 363 Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251 VYV + L+DMYAKCG +D+ALR+ Sbjct: 364 VYVASALVDMYAKCGSLDNALRV 386 Score = 72.4 bits (176), Expect = 4e-11 Identities = 33/83 (39%), Positives = 48/83 (57%) Frame = +3 Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182 Y + G + A+ LF +MR G +P ++TL+ +L A +G L LGKWV K ++ N Sbjct: 203 YTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKMELN 262 Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251 Y + LIDMY KCG + A R+ Sbjct: 263 SYTASALIDMYGKCGDLMSARRV 285 >ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400-like [Cucumis sativus] Length = 619 Score = 113 bits (283), Expect = 1e-23 Identities = 55/83 (66%), Positives = 65/83 (78%) Frame = +3 Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182 YAQNG S AI LF DMR + PD+ITLIG+LSA ASIGALDLGK V YAS++G Q + Sbjct: 304 YAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDD 363 Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251 VYVGT L+DMYAKCG +D+A R+ Sbjct: 364 VYVGTALVDMYAKCGSLDNAFRV 386 Score = 67.4 bits (163), Expect = 1e-09 Identities = 31/83 (37%), Positives = 49/83 (59%) Frame = +3 Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182 Y++ + A+ LF +M AG P++++L+ VL A +G L LG WV E+ + + N Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262 Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251 ++G+ LI MY KCG + A RI Sbjct: 263 YFMGSALIHMYGKCGDLVSARRI 285 >ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400-like [Cucumis sativus] Length = 619 Score = 113 bits (283), Expect = 1e-23 Identities = 55/83 (66%), Positives = 65/83 (78%) Frame = +3 Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182 YAQNG S AI LF DMR + PD+ITLIG+LSA ASIGALDLGK V YAS++G Q + Sbjct: 304 YAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDD 363 Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251 VYVGT L+DMYAKCG +D+A R+ Sbjct: 364 VYVGTALVDMYAKCGSLDNAFRV 386 Score = 67.4 bits (163), Expect = 1e-09 Identities = 31/83 (37%), Positives = 49/83 (59%) Frame = +3 Query: 3 YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182 Y++ + A+ LF +M AG P++++L+ VL A +G L LG WV E+ + + N Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262 Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251 ++G+ LI MY KCG + A RI Sbjct: 263 YFMGSALIHMYGKCGDLVSARRI 285