BLASTX nr result

ID: Coptis24_contig00020542 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020542
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containi...   124   6e-27
ref|XP_002318172.1| predicted protein [Populus trichocarpa] gi|2...   122   2e-26
ref|XP_002532091.1| pentatricopeptide repeat-containing protein,...   120   1e-25
ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containi...   113   1e-23
ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containi...   113   1e-23

>ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera] gi|296090299|emb|CBI40118.3| unnamed
           protein product [Vitis vinifera]
          Length = 618

 Score =  124 bits (312), Expect = 6e-27
 Identities = 57/83 (68%), Positives = 71/83 (85%)
 Frame = +3

Query: 3   YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
           YAQNG S+ AI+LF  MR +G++PDKITL+GVLSA ASIGALD GKW+  YAS++GLQ++
Sbjct: 303 YAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQND 362

Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
           +YV T LIDMYAKCG +DDALR+
Sbjct: 363 IYVSTALIDMYAKCGSLDDALRV 385



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 32/83 (38%), Positives = 51/83 (61%)
 Frame = +3

Query: 3   YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
           Y++ G +  A+ LF +MR AG +PD++TL+ +L A   +G L LG W+  +  +  +  N
Sbjct: 202 YSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLN 261

Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
            +VG+ LI MY KCG +  A R+
Sbjct: 262 SFVGSALIGMYGKCGDLSSARRV 284


>ref|XP_002318172.1| predicted protein [Populus trichocarpa] gi|222858845|gb|EEE96392.1|
           predicted protein [Populus trichocarpa]
          Length = 617

 Score =  122 bits (307), Expect = 2e-26
 Identities = 57/83 (68%), Positives = 71/83 (85%)
 Frame = +3

Query: 3   YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
           YAQNGASN AI+LF+ MR AG  PD++T+I VLSA ++IGALDLGKWV  +AS+KGLQH+
Sbjct: 305 YAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHD 364

Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
           VYV + LIDMYAKCG +DDA+R+
Sbjct: 365 VYVASALIDMYAKCGSLDDAVRV 387



 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 36/83 (43%), Positives = 54/83 (65%)
 Frame = +3

Query: 3   YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
           Y++ G +  AI LF +MR  G +PD++TL+ VL A   +G L LG+WV  +  +K ++ N
Sbjct: 204 YSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVN 263

Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
            Y+G+ LIDMY KCG +  A R+
Sbjct: 264 SYMGSALIDMYGKCGDLISARRV 286


>ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528238|gb|EEF30293.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 446

 Score =  120 bits (300), Expect = 1e-25
 Identities = 56/83 (67%), Positives = 71/83 (85%)
 Frame = +3

Query: 3   YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
           YAQNGAS+ A+ LF+ MR AG+ P++IT++ VLSA ASIGALDLGKWV  YASQ+GLQH+
Sbjct: 304 YAQNGASDEAMTLFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHD 363

Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
           VYV + L+DMYAKCG +D+ALR+
Sbjct: 364 VYVASALVDMYAKCGSLDNALRV 386



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 33/83 (39%), Positives = 48/83 (57%)
 Frame = +3

Query: 3   YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
           Y + G +  A+ LF +MR  G +P ++TL+ +L A   +G L LGKWV      K ++ N
Sbjct: 203 YTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKMELN 262

Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
            Y  + LIDMY KCG +  A R+
Sbjct: 263 SYTASALIDMYGKCGDLMSARRV 285


>ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  113 bits (283), Expect = 1e-23
 Identities = 55/83 (66%), Positives = 65/83 (78%)
 Frame = +3

Query: 3   YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
           YAQNG S  AI LF DMR +   PD+ITLIG+LSA ASIGALDLGK V  YAS++G Q +
Sbjct: 304 YAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDD 363

Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
           VYVGT L+DMYAKCG +D+A R+
Sbjct: 364 VYVGTALVDMYAKCGSLDNAFRV 386



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 31/83 (37%), Positives = 49/83 (59%)
 Frame = +3

Query: 3   YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
           Y++   +  A+ LF +M  AG  P++++L+ VL A   +G L LG WV E+  +  +  N
Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262

Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
            ++G+ LI MY KCG +  A RI
Sbjct: 263 YFMGSALIHMYGKCGDLVSARRI 285


>ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  113 bits (283), Expect = 1e-23
 Identities = 55/83 (66%), Positives = 65/83 (78%)
 Frame = +3

Query: 3   YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
           YAQNG S  AI LF DMR +   PD+ITLIG+LSA ASIGALDLGK V  YAS++G Q +
Sbjct: 304 YAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDD 363

Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
           VYVGT L+DMYAKCG +D+A R+
Sbjct: 364 VYVGTALVDMYAKCGSLDNAFRV 386



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 31/83 (37%), Positives = 49/83 (59%)
 Frame = +3

Query: 3   YAQNGASNSAIMLFHDMRRAGLDPDKITLIGVLSASASIGALDLGKWVSEYASQKGLQHN 182
           Y++   +  A+ LF +M  AG  P++++L+ VL A   +G L LG WV E+  +  +  N
Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262

Query: 183 VYVGTGLIDMYAKCGRIDDALRI 251
            ++G+ LI MY KCG +  A RI
Sbjct: 263 YFMGSALIHMYGKCGDLVSARRI 285


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