BLASTX nr result
ID: Coptis24_contig00020516
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00020516 (429 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AEP94828.1| RNA polymerase beta subunit [Vigna unguiculata] 70 2e-10 ref|YP_006460343.1| RNA polymerase beta subunit (chloroplast) [V... 70 2e-10 ref|YP_005088805.1| RNA polymerase beta subunit (chloroplast) [M... 70 2e-10 ref|YP_001122806.1| RNA polymerase beta subunit [Phaseolus vulga... 70 2e-10 ref|YP_538763.1| RNA polymerase beta subunit [Glycine max] gi|88... 69 4e-10 >gb|AEP94828.1| RNA polymerase beta subunit [Vigna unguiculata] Length = 1070 Score = 69.7 bits (169), Expect = 2e-10 Identities = 38/59 (64%), Positives = 41/59 (69%), Gaps = 3/59 (5%) Frame = +2 Query: 197 G*SRIFYGR---SFRTTCYNRKVLYRELNHQADHKIHGRSSGHYALVTQQPLRGRAKQG 364 G S+IF GR SF+ K +L HQ D KIHGRSSGHYALVTQQPLRGRAKQG Sbjct: 923 GKSKIFDGRTGNSFKQPALMGKTYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 981 >ref|YP_006460343.1| RNA polymerase beta subunit (chloroplast) [Vigna unguiculata] gi|387598468|gb|AFJ91860.1| RNA polymerase beta subunit (chloroplast) [Vigna unguiculata] Length = 1070 Score = 69.7 bits (169), Expect = 2e-10 Identities = 38/59 (64%), Positives = 41/59 (69%), Gaps = 3/59 (5%) Frame = +2 Query: 197 G*SRIFYGR---SFRTTCYNRKVLYRELNHQADHKIHGRSSGHYALVTQQPLRGRAKQG 364 G S+IF GR SF+ K +L HQ D KIHGRSSGHYALVTQQPLRGRAKQG Sbjct: 923 GKSKIFDGRTGNSFKQPALMGKTYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 981 >ref|YP_005088805.1| RNA polymerase beta subunit (chloroplast) [Millettia pinnata] gi|356474824|gb|AET11342.1| RNA polymerase beta subunit (chloroplast) [Millettia pinnata] Length = 1076 Score = 69.7 bits (169), Expect = 2e-10 Identities = 39/59 (66%), Positives = 41/59 (69%), Gaps = 3/59 (5%) Frame = +2 Query: 197 G*SRIFYGR---SFRTTCYNRKVLYRELNHQADHKIHGRSSGHYALVTQQPLRGRAKQG 364 G SRIF GR SF+ K +L HQ D KIHGRSSGHYALVTQQPLRGRAKQG Sbjct: 929 GKSRIFDGRTGNSFKQPVIMGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 987 >ref|YP_001122806.1| RNA polymerase beta subunit [Phaseolus vulgaris] gi|158513614|sp|A4GGA5.1|RPOB_PHAVU RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta; Short=RNA polymerase subunit beta gi|112030974|gb|ABH88086.1| RNA polymerase beta subunit [Phaseolus vulgaris] gi|158187149|gb|ABW22782.1| RNA polymerase beta subunit [Phaseolus vulgaris] Length = 1070 Score = 69.7 bits (169), Expect = 2e-10 Identities = 38/59 (64%), Positives = 41/59 (69%), Gaps = 3/59 (5%) Frame = +2 Query: 197 G*SRIFYGR---SFRTTCYNRKVLYRELNHQADHKIHGRSSGHYALVTQQPLRGRAKQG 364 G S+IF GR SF+ K +L HQ D KIHGRSSGHYALVTQQPLRGRAKQG Sbjct: 923 GKSKIFDGRTGNSFKQPAIMGKTYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 981 >ref|YP_538763.1| RNA polymerase beta subunit [Glycine max] gi|88984774|sp|Q8HVY5.2|RPOB_SOYBN RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta; Short=RNA polymerase subunit beta gi|83595742|gb|ABC25123.1| RNA polymerase beta subunit [Glycine max] Length = 1070 Score = 68.9 bits (167), Expect = 4e-10 Identities = 38/59 (64%), Positives = 41/59 (69%), Gaps = 3/59 (5%) Frame = +2 Query: 197 G*SRIFYGR---SFRTTCYNRKVLYRELNHQADHKIHGRSSGHYALVTQQPLRGRAKQG 364 G S+IF GR SF+ K +L HQ D KIHGRSSGHYALVTQQPLRGRAKQG Sbjct: 923 GKSKIFDGRTGNSFKQPAIMGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 981