BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020516
         (429 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEP94828.1| RNA polymerase beta subunit [Vigna unguiculata]         70   2e-10
ref|YP_006460343.1| RNA polymerase beta subunit (chloroplast) [V...    70   2e-10
ref|YP_005088805.1| RNA polymerase beta subunit (chloroplast) [M...    70   2e-10
ref|YP_001122806.1| RNA polymerase beta subunit [Phaseolus vulga...    70   2e-10
ref|YP_538763.1| RNA polymerase beta subunit [Glycine max] gi|88...    69   4e-10

>gb|AEP94828.1| RNA polymerase beta subunit [Vigna unguiculata]
          Length = 1070

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 38/59 (64%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
 Frame = +2

Query: 197  G*SRIFYGR---SFRTTCYNRKVLYRELNHQADHKIHGRSSGHYALVTQQPLRGRAKQG 364
            G S+IF GR   SF+      K    +L HQ D KIHGRSSGHYALVTQQPLRGRAKQG
Sbjct: 923  GKSKIFDGRTGNSFKQPALMGKTYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 981


>ref|YP_006460343.1| RNA polymerase beta subunit (chloroplast) [Vigna unguiculata]
            gi|387598468|gb|AFJ91860.1| RNA polymerase beta subunit
            (chloroplast) [Vigna unguiculata]
          Length = 1070

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 38/59 (64%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
 Frame = +2

Query: 197  G*SRIFYGR---SFRTTCYNRKVLYRELNHQADHKIHGRSSGHYALVTQQPLRGRAKQG 364
            G S+IF GR   SF+      K    +L HQ D KIHGRSSGHYALVTQQPLRGRAKQG
Sbjct: 923  GKSKIFDGRTGNSFKQPALMGKTYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 981


>ref|YP_005088805.1| RNA polymerase beta subunit (chloroplast) [Millettia pinnata]
            gi|356474824|gb|AET11342.1| RNA polymerase beta subunit
            (chloroplast) [Millettia pinnata]
          Length = 1076

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 39/59 (66%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
 Frame = +2

Query: 197  G*SRIFYGR---SFRTTCYNRKVLYRELNHQADHKIHGRSSGHYALVTQQPLRGRAKQG 364
            G SRIF GR   SF+      K    +L HQ D KIHGRSSGHYALVTQQPLRGRAKQG
Sbjct: 929  GKSRIFDGRTGNSFKQPVIMGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 987


>ref|YP_001122806.1| RNA polymerase beta subunit [Phaseolus vulgaris]
            gi|158513614|sp|A4GGA5.1|RPOB_PHAVU RecName:
            Full=DNA-directed RNA polymerase subunit beta; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta; Short=RNA polymerase subunit beta
            gi|112030974|gb|ABH88086.1| RNA polymerase beta subunit
            [Phaseolus vulgaris] gi|158187149|gb|ABW22782.1| RNA
            polymerase beta subunit [Phaseolus vulgaris]
          Length = 1070

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 38/59 (64%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
 Frame = +2

Query: 197  G*SRIFYGR---SFRTTCYNRKVLYRELNHQADHKIHGRSSGHYALVTQQPLRGRAKQG 364
            G S+IF GR   SF+      K    +L HQ D KIHGRSSGHYALVTQQPLRGRAKQG
Sbjct: 923  GKSKIFDGRTGNSFKQPAIMGKTYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 981


>ref|YP_538763.1| RNA polymerase beta subunit [Glycine max]
            gi|88984774|sp|Q8HVY5.2|RPOB_SOYBN RecName:
            Full=DNA-directed RNA polymerase subunit beta; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta; Short=RNA polymerase subunit beta
            gi|83595742|gb|ABC25123.1| RNA polymerase beta subunit
            [Glycine max]
          Length = 1070

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 38/59 (64%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
 Frame = +2

Query: 197  G*SRIFYGR---SFRTTCYNRKVLYRELNHQADHKIHGRSSGHYALVTQQPLRGRAKQG 364
            G S+IF GR   SF+      K    +L HQ D KIHGRSSGHYALVTQQPLRGRAKQG
Sbjct: 923  GKSKIFDGRTGNSFKQPAIMGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 981