BLASTX nr result

ID: Coptis24_contig00020492 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020492
         (422 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635008.1| PREDICTED: DNA replication licensing factor ...    80   2e-13
emb|CBI29412.3| unnamed protein product [Vitis vinifera]               80   2e-13
emb|CAN77381.1| hypothetical protein VITISV_029723 [Vitis vinifera]    80   2e-13
ref|XP_003534851.1| PREDICTED: DNA replication licensing factor ...    77   1e-12
ref|XP_003546381.1| PREDICTED: maternal DNA replication licensin...    75   7e-12

>ref|XP_003635008.1| PREDICTED: DNA replication licensing factor MCM6 [Vitis vinifera]
          Length = 812

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 45/79 (56%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
 Frame = -3

Query: 420 LIQWYIDQQNKKSAYGSXXXXXXXXXXXXXXXESLIRREGHLIVLDDGREATEGGEDLSP 241
           LIQWY+ QQN+K+ Y S               ESLIRREGHLIV+DDGR+A   GED  P
Sbjct: 734 LIQWYVGQQNEKNNYSSMEEAANEVSKLKAIIESLIRREGHLIVVDDGRQAAAEGEDGRP 793

Query: 240 ----RDRRILAVAPNYVID 196
               R+ RILAVAPNYVID
Sbjct: 794 PSVSRNDRILAVAPNYVID 812


>emb|CBI29412.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 45/79 (56%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
 Frame = -3

Query: 420 LIQWYIDQQNKKSAYGSXXXXXXXXXXXXXXXESLIRREGHLIVLDDGREATEGGEDLSP 241
           LIQWY+ QQN+K+ Y S               ESLIRREGHLIV+DDGR+A   GED  P
Sbjct: 744 LIQWYVGQQNEKNNYSSMEEAANEVSKLKAIIESLIRREGHLIVVDDGRQAAAEGEDGRP 803

Query: 240 ----RDRRILAVAPNYVID 196
               R+ RILAVAPNYVID
Sbjct: 804 PSVSRNDRILAVAPNYVID 822


>emb|CAN77381.1| hypothetical protein VITISV_029723 [Vitis vinifera]
          Length = 807

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 45/79 (56%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
 Frame = -3

Query: 420 LIQWYIDQQNKKSAYGSXXXXXXXXXXXXXXXESLIRREGHLIVLDDGREATEGGEDLSP 241
           LIQWY+ QQN+K+ Y S               ESLIRREGHLIV+DDGR+A   GED  P
Sbjct: 729 LIQWYVGQQNEKNNYSSMEEAANEVSKLKAIIESLIRREGHLIVVDDGRQAAAEGEDGRP 788

Query: 240 ----RDRRILAVAPNYVID 196
               R+ RILAVAPNYVID
Sbjct: 789 PSVSRNDRILAVAPNYVID 807


>ref|XP_003534851.1| PREDICTED: DNA replication licensing factor MCM6 [Glycine max]
          Length = 863

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 42/76 (55%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
 Frame = -3

Query: 420  LIQWYIDQQNKKSAYGSXXXXXXXXXXXXXXXESLIRREGHLIVLDDGREATEGGEDL-S 244
            LIQWY+DQQN+++ Y S               ESLIRREGHLIV+DDG+ A    E   +
Sbjct: 788  LIQWYVDQQNERNNYSSMEEVQAEISKIKAIIESLIRREGHLIVVDDGQAAAAAAEPPGA 847

Query: 243  PRDRRILAVAPNYVID 196
            PR+ RILAVAPNYVID
Sbjct: 848  PRNYRILAVAPNYVID 863


>ref|XP_003546381.1| PREDICTED: maternal DNA replication licensing factor mcm6-like
           [Glycine max]
          Length = 831

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 41/76 (53%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
 Frame = -3

Query: 420 LIQWYIDQQNKKSAYGSXXXXXXXXXXXXXXXESLIRREGHLIVLDDGREATEGGEDL-S 244
           LIQWY+DQQN+++ Y S               ESLIRREGHLIV+D+G  A    E   +
Sbjct: 756 LIQWYVDQQNERNNYSSMDEVQAEISKIKAIIESLIRREGHLIVVDNGEAAAAAAEPPGA 815

Query: 243 PRDRRILAVAPNYVID 196
           PR+ RILAVAPNYVID
Sbjct: 816 PRNYRILAVAPNYVID 831


Top