BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020469
         (731 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517927.1| pentatricopeptide repeat-containing protein,...    87   9e-25
ref|XP_004137019.1| PREDICTED: pentatricopeptide repeat-containi...    65   5e-17
ref|XP_002466988.1| hypothetical protein SORBIDRAFT_01g017960 [S...    57   7e-16
ref|XP_003633265.1| PREDICTED: pentatricopeptide repeat-containi...    84   3e-15
emb|CAN73943.1| hypothetical protein VITISV_032243 [Vitis vinifera]    84   3e-15

>ref|XP_002517927.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542909|gb|EEF44445.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 507

 Score = 87.4 bits (215), Expect(2) = 9e-25
 Identities = 40/67 (59%), Positives = 51/67 (76%)
 Frame = +3

Query: 12  RRGAEIGRAPYASTWNILAMEYLKDKQMKRGVEMLKKALSVGRQGWKPAPVTVYSCLEYY 191
           ++ AE GR PYASTW  +AM Y+   QM + VEMLKKA+SV R+GWKP P+T+ +CL+Y 
Sbjct: 384 KKAAE-GRTPYASTWITMAMSYIGQNQMSKAVEMLKKAISVSRKGWKPNPITLTTCLDYL 442

Query: 192 EEQRDVE 212
           EEQ DVE
Sbjct: 443 EEQGDVE 449



 Score = 52.4 bits (124), Expect(2) = 9e-25
 Identities = 26/57 (45%), Positives = 38/57 (66%)
 Frame = +2

Query: 212 GAEELVEFLGPTGLVTEEVHHWLLRIYIAANKPVTDVLKRMKVSGHSADVETQKILQ 382
           G EE+V+ L  T  +T +++H L+R Y AA  PVT V+ +MK+   +AD ET KIL+
Sbjct: 450 GIEEIVKSLKSTESLTRDIYHRLVRTYTAAGIPVTKVIDKMKMDNIAADEETHKILE 506


>ref|XP_004137019.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
           gi|449479168|ref|XP_004155524.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 500

 Score = 65.1 bits (157), Expect(2) = 5e-17
 Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
 Frame = +3

Query: 21  AEIGRAPYASTWNILAMEYLKDKQMKRGVEMLKKALSVGRQGWKPAPVTVY-SCLEYYEE 197
           A + R P+ STW+ILA  Y +   M + VEMLKKA+ VGRQ WKP    +  +CL+Y E+
Sbjct: 374 AVVERTPFRSTWSILATGYAEYGHMSKAVEMLKKAILVGRQNWKPKQGDILEACLDYLEK 433

Query: 198 QRDVE 212
           Q D E
Sbjct: 434 QGDAE 438



 Score = 48.5 bits (114), Expect(2) = 5e-17
 Identities = 24/57 (42%), Positives = 36/57 (63%)
 Frame = +2

Query: 218 EELVEFLGPTGLVTEEVHHWLLRIYIAANKPVTDVLKRMKVSGHSADVETQKILQEK 388
           +E+V     +G V +E+++ LLR  IA  KPV  +L++MK+ G +AD E  KIL  K
Sbjct: 441 DEIVRLCKSSGTVMKEMYYRLLRTSIAGGKPVISILEQMKMDGFAADEEVDKILGSK 497


>ref|XP_002466988.1| hypothetical protein SORBIDRAFT_01g017960 [Sorghum bicolor]
           gi|241920842|gb|EER93986.1| hypothetical protein
           SORBIDRAFT_01g017960 [Sorghum bicolor]
          Length = 510

 Score = 56.6 bits (135), Expect(2) = 7e-16
 Identities = 27/59 (45%), Positives = 39/59 (66%)
 Frame = +2

Query: 200 KRCRGAEELVEFLGPTGLVTEEVHHWLLRIYIAANKPVTDVLKRMKVSGHSADVETQKI 376
           K    AEE+   L   G +T+EV+H LL+ Y+ A KPV+D+L+RMK  G  AD ET+++
Sbjct: 441 KDVEAAEEIASMLQKLGPLTKEVYHCLLKTYVRAGKPVSDLLERMKKDGLEADEETERM 499



 Score = 53.1 bits (126), Expect(2) = 7e-16
 Identities = 25/61 (40%), Positives = 35/61 (57%)
 Frame = +3

Query: 30  GRAPYASTWNILAMEYLKDKQMKRGVEMLKKALSVGRQGWKPAPVTVYSCLEYYEEQRDV 209
           GR PYA+TW  LA  + K  ++ + V+M +KAL      WKP    V   LE++  Q+DV
Sbjct: 384 GRTPYANTWYKLAGGFFKTGEVSKAVDMTRKALESATPPWKPDLTNVLMSLEHFMNQKDV 443

Query: 210 E 212
           E
Sbjct: 444 E 444


>ref|XP_003633265.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Vitis vinifera]
          Length = 461

 Score = 84.0 bits (206), Expect(2) = 3e-15
 Identities = 37/61 (60%), Positives = 49/61 (80%)
 Frame = +3

Query: 33  RAPYASTWNILAMEYLKDKQMKRGVEMLKKALSVGRQGWKPAPVTVYSCLEYYEEQRDVE 212
           R PYASTWNILA  Y++DKQM + VEMLKKA+SVGR+GW+P  + + +C+EY E Q ++E
Sbjct: 363 RMPYASTWNILAKGYVEDKQMPKAVEMLKKAISVGRKGWRPNSIILDACIEYLEGQGNLE 422

Query: 213 E 215
           E
Sbjct: 423 E 423



 Score = 23.9 bits (50), Expect(2) = 3e-15
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 218 EELVEFLGPTGLVTEEVHHWLLRIYIAANKPVTDV 322
           EE+       G+   ++HH LLR   A  K V+ +
Sbjct: 425 EEIARLCKNLGIPDGDIHHRLLRTSAAGEKSVSAI 459


>emb|CAN73943.1| hypothetical protein VITISV_032243 [Vitis vinifera]
          Length = 448

 Score = 84.0 bits (206), Expect(2) = 3e-15
 Identities = 37/61 (60%), Positives = 49/61 (80%)
 Frame = +3

Query: 33  RAPYASTWNILAMEYLKDKQMKRGVEMLKKALSVGRQGWKPAPVTVYSCLEYYEEQRDVE 212
           R PYASTWNILA  Y++DKQM + VEMLKKA+SVGR+GW+P  + + +C+EY E Q ++E
Sbjct: 350 RMPYASTWNILAKGYVEDKQMPKAVEMLKKAISVGRKGWRPNSIILDACIEYLEGQGNLE 409

Query: 213 E 215
           E
Sbjct: 410 E 410



 Score = 23.9 bits (50), Expect(2) = 3e-15
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 218 EELVEFLGPTGLVTEEVHHWLLRIYIAANKPVTDV 322
           EE+       G+   ++HH LLR   A  K V+ +
Sbjct: 412 EEIARLCKNLGIPDGDIHHRLLRTSAAGEKSVSAI 446