BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020377
         (1025 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containi...   464   e-128
ref|XP_002523370.1| pentatricopeptide repeat-containing protein,...   436   e-120
ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containi...   432   e-119
ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containi...   427   e-117
ref|XP_003637737.1| Pentatricopeptide repeat-containing protein ...   377   e-102

>ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
            mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  464 bits (1194), Expect = e-128
 Identities = 222/341 (65%), Positives = 280/341 (82%)
 Frame = -3

Query: 1023 LFQNMELSDIKPELVTWNCLLSGHCLHRAYEKVLKILHRMQSVGLKPNSNSITSAIQAIA 844
            LF  +E SD+KP++VTWNCLLSGH LH   E+VL IL RMQ  G KPNS+S+TS +QAI+
Sbjct: 322  LFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAIS 381

Query: 843  EQRSLNLGKEIHGYVMRSGLDYDVYVGTSLVDMYVKSGSLTKARAVFDLMNYKNVYAWNS 664
            E   LN+GKE HGYV+R+G D DVYVGTSL+DMYVK+ SLT A+AVFD M  +N++AWNS
Sbjct: 382  ELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNS 441

Query: 663  LVSGYAFNGLFEDALELLTRMEQEDIRPDLVTWNGLIFGYSLWGRSKEALLLIRQMKMLG 484
            LVSGY+F G+FEDAL LL +ME+E I+PDLVTWNG+I GY++WG  KEAL ++ Q K LG
Sbjct: 442  LVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLG 501

Query: 483  LNPNVVSWTAIISGCSQMENYKDSLELFLQMQEEGIEPNSTTISSLLRACAGLSLLQIGE 304
            L PNVVSWTA+ISG SQ  N +DSL+ F QMQ+EG+ PNS +I+ LLRACA LSLLQ G+
Sbjct: 502  LTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGK 561

Query: 303  EIHCRAVKFGYYEDIYVATSLIDMYCKSGSLKKAYQVFRKIKNKTVASWNSMIMGFAIHG 124
            EIHC +++ G+ ED++VAT+LIDMY KS SLK A++VFR+I+NKT+ASWN MIMGFAI G
Sbjct: 562  EIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFG 621

Query: 123  LGEQAIVLFNEICEAGLQPDSITFTAVLSGCRHSGLIDEGW 1
            LG++AI +FNE+ + G+ PD+ITFTA+LS C++SGLI EGW
Sbjct: 622  LGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGW 662



 Score =  204 bits (519), Expect = 3e-50
 Identities = 110/319 (34%), Positives = 176/319 (55%)
 Frame = -3

Query: 990  PELVTWNCLLSGHCLHRAYEKVLKILHRMQSVGLKPNSNSITSAIQAIAEQRSLNLGKEI 811
            PE + WN  +  +      +K +++  +MQ   LK  + +I   +QA  +  +LN  K+I
Sbjct: 197  PEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQI 256

Query: 810  HGYVMRSGLDYDVYVGTSLVDMYVKSGSLTKARAVFDLMNYKNVYAWNSLVSGYAFNGLF 631
            HGYV R GLD DV +   L+ MY K+G L  AR VFD M  +N  +WNS++S YA  G  
Sbjct: 257  HGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFL 316

Query: 630  EDALELLTRMEQEDIRPDLVTWNGLIFGYSLWGRSKEALLLIRQMKMLGLNPNVVSWTAI 451
             DA  L   +E  D++PD+VTWN L+ G+ L G  +E L ++++M+  G  PN       
Sbjct: 317  NDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPN------- 369

Query: 450  ISGCSQMENYKDSLELFLQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGY 271
                                        S++++S+L+A + L  L +G+E H   ++ G+
Sbjct: 370  ----------------------------SSSMTSVLQAISELGFLNMGKETHGYVLRNGF 401

Query: 270  YEDIYVATSLIDMYCKSGSLKKAYQVFRKIKNKTVASWNSMIMGFAIHGLGEQAIVLFNE 91
              D+YV TSLIDMY K+ SL  A  VF  +KN+ + +WNS++ G++  G+ E A+ L N+
Sbjct: 402  DCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQ 461

Query: 90   ICEAGLQPDSITFTAVLSG 34
            + + G++PD +T+  ++SG
Sbjct: 462  MEKEGIKPDLVTWNGMISG 480



 Score = 96.7 bits (239), Expect = 8e-18
 Identities = 51/149 (34%), Positives = 81/149 (54%)
 Frame = -3

Query: 480 NPNVVSWTAIISGCSQMENYKDSLELFLQMQEEGIEPNSTTISSLLRACAGLSLLQIGEE 301
           NP  + W   I    Q E  +  +ELF +MQ   ++  + TI  +L+AC  +  L   ++
Sbjct: 196 NPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQ 255

Query: 300 IHCRAVKFGYYEDIYVATSLIDMYCKSGSLKKAYQVFRKIKNKTVASWNSMIMGFAIHGL 121
           IH    +FG   D+ +   LI MY K+G L+ A +VF  ++N+  +SWNSMI  +A  G 
Sbjct: 256 IHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGF 315

Query: 120 GEQAIVLFNEICEAGLQPDSITFTAVLSG 34
              A  LF E+  + ++PD +T+  +LSG
Sbjct: 316 LNDAWSLFYELESSDMKPDIVTWNCLLSG 344



 Score = 66.6 bits (161), Expect = 9e-09
 Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 7/167 (4%)
 Frame = -3

Query: 489 LGLNPNVVSWTAIISGCSQMENYKDS-------LELFLQMQEEGIEPNSTTISSLLRACA 331
           +GL  N + W + +      E +K S       LE+F ++  +G+  +S   S  L+ C 
Sbjct: 91  VGLPRNYLKWNSFV------EEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCT 144

Query: 330 GLSLLQIGEEIHCRAVKFGYYEDIYVATSLIDMYCKSGSLKKAYQVFRKIKNKTVASWNS 151
            +  + +G EIH   +K G+  D+Y+  +L++ Y +   L+KA QVF ++ N     WN 
Sbjct: 145 RVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNE 204

Query: 150 MIMGFAIHGLGEQAIVLFNEICEAGLQPDSITFTAVLSGCRHSGLID 10
            I+        ++ + LF ++  + L+ ++ T   VL  C   G ++
Sbjct: 205 AIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALN 251


>ref|XP_002523370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223537458|gb|EEF39086.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 695

 Score =  436 bits (1122), Expect = e-120
 Identities = 203/334 (60%), Positives = 270/334 (80%)
 Frame = -3

Query: 1023 LFQNMELSDIKPELVTWNCLLSGHCLHRAYEKVLKILHRMQSVGLKPNSNSITSAIQAIA 844
            LF  ME S +KP+++TWNCLLSGH LH +Y++VL IL +MQ  G +PNS+SITS +Q + 
Sbjct: 354  LFHEMESSSVKPDIITWNCLLSGHALHGSYKEVLMILQKMQVTGFRPNSSSITSVLQTVT 413

Query: 843  EQRSLNLGKEIHGYVMRSGLDYDVYVGTSLVDMYVKSGSLTKARAVFDLMNYKNVYAWNS 664
            E R L +GK IHGYV+R+ L+ D+YV  SL+DMYVK+  L  ++AVFD M  +N+ AWNS
Sbjct: 414  ELRLLKIGKGIHGYVIRNRLNPDLYVEASLLDMYVKNNCLATSQAVFDNMKNRNIVAWNS 473

Query: 663  LVSGYAFNGLFEDALELLTRMEQEDIRPDLVTWNGLIFGYSLWGRSKEALLLIRQMKMLG 484
            L++GYA+ GLF+DA  LL +M++E IR D+VTWNGL+ GYS+WG ++EAL +I ++K  G
Sbjct: 474  LITGYAYKGLFDDAKRLLNKMKEEGIRADIVTWNGLVSGYSIWGHNEEALAVINEIKSSG 533

Query: 483  LNPNVVSWTAIISGCSQMENYKDSLELFLQMQEEGIEPNSTTISSLLRACAGLSLLQIGE 304
            L PNVVSWTA+ISGCSQ  NYK+SLE F+QMQ+EGI+PNSTT+SSLL+ C GLSLL+ G+
Sbjct: 534  LTPNVVSWTALISGCSQNGNYKESLEFFIQMQQEGIKPNSTTVSSLLKTCGGLSLLKKGK 593

Query: 303  EIHCRAVKFGYYEDIYVATSLIDMYCKSGSLKKAYQVFRKIKNKTVASWNSMIMGFAIHG 124
            EIHC +VK G+  DIY+AT+L+DMY KSG+LK A +VF++ KNKT+A WN MIMGFAI+G
Sbjct: 594  EIHCLSVKSGFTGDIYIATALVDMYSKSGNLKSAREVFKRTKNKTLACWNCMIMGFAIYG 653

Query: 123  LGEQAIVLFNEICEAGLQPDSITFTAVLSGCRHS 22
            LG++AI L++E+  AG+ PDSITFTA+LS C++S
Sbjct: 654  LGKEAISLYDEMLGAGILPDSITFTALLSACKNS 687



 Score =  187 bits (474), Expect = 5e-45
 Identities = 96/314 (30%), Positives = 172/314 (54%)
 Frame = -3

Query: 975  WNCLLSGHCLHRAYEKVLKILHRMQSVGLKPNSNSITSAIQAIAEQRSLNLGKEIHGYVM 796
            WN  +  +  +  +   +++   MQ    K +++++   +QA  ++ +LN GK+IHGYV+
Sbjct: 234  WNEAIMINLKNERFGNAIELFRGMQFSFAKADASTVLKMLQACGKEEALNEGKQIHGYVI 293

Query: 795  RSGLDYDVYVGTSLVDMYVKSGSLTKARAVFDLMNYKNVYAWNSLVSGYAFNGLFEDALE 616
            +  L+ ++++  SL+ MY ++G +  +R VFD M   N+ +WNS++S Y   G    A +
Sbjct: 294  KHALESNLWISNSLISMYSRNGKIILSRRVFDSMKDHNLSSWNSIISSYTALGYLNGAWK 353

Query: 615  LLTRMEQEDIRPDLVTWNGLIFGYSLWGRSKEALLLIRQMKMLGLNPNVVSWTAIISGCS 436
            L   ME   ++PD++TWN L+ G++L G  KE L+++++M++ G  P             
Sbjct: 354  LFHEMESSSVKPDIITWNCLLSGHALHGSYKEVLMILQKMQVTGFRP------------- 400

Query: 435  QMENYKDSLELFLQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIY 256
                                  NS++I+S+L+    L LL+IG+ IH   ++     D+Y
Sbjct: 401  ----------------------NSSSITSVLQTVTELRLLKIGKGIHGYVIRNRLNPDLY 438

Query: 255  VATSLIDMYCKSGSLKKAYQVFRKIKNKTVASWNSMIMGFAIHGLGEQAIVLFNEICEAG 76
            V  SL+DMY K+  L  +  VF  +KN+ + +WNS+I G+A  GL + A  L N++ E G
Sbjct: 439  VEASLLDMYVKNNCLATSQAVFDNMKNRNIVAWNSLITGYAYKGLFDDAKRLLNKMKEEG 498

Query: 75   LQPDSITFTAVLSG 34
            ++ D +T+  ++SG
Sbjct: 499  IRADIVTWNGLVSG 512



 Score =  101 bits (252), Expect = 3e-19
 Identities = 59/204 (28%), Positives = 101/204 (49%)
 Frame = -3

Query: 1023 LFQNMELSDIKPELVTWNCLLSGHCLHRAYEKVLKILHRMQSVGLKPNSNSITSAIQAIA 844
            +   ++ S + P +V+W  L+SG   +  Y++ L+   +MQ  G+KPNS +++S ++   
Sbjct: 525  VINEIKSSGLTPNVVSWTALISGCSQNGNYKESLEFFIQMQQEGIKPNSTTVSSLLKTCG 584

Query: 843  EQRSLNLGKEIHGYVMRSGLDYDVYVGTSLVDMYVKSGSLTKARAVFDLMNYKNVYAWNS 664
                L  GKEIH   ++SG   D+Y+ T+LVDMY KSG+L                    
Sbjct: 585  GLSLLKKGKEIHCLSVKSGFTGDIYIATALVDMYSKSGNL-------------------- 624

Query: 663  LVSGYAFNGLFEDALELLTRMEQEDIRPDLVTWNGLIFGYSLWGRSKEALLLIRQMKMLG 484
                       + A E+  R + +     L  WN +I G++++G  KEA+ L  +M   G
Sbjct: 625  -----------KSAREVFKRTKNKT----LACWNCMIMGFAIYGLGKEAISLYDEMLGAG 669

Query: 483  LNPNVVSWTAIISGCSQMENYKDS 412
            + P+ +++TA++S C     Y  S
Sbjct: 670  ILPDSITFTALLSACKNSAQYNPS 693



 Score = 61.2 bits (147), Expect = 4e-07
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
 Frame = -3

Query: 489 LGLNPNVVSWTAIISGCSQMENYKDS----LELFLQMQEEGIEPNSTTISSLLRACAGLS 322
           +G   N V W++ +    + EN        L +F ++  +G+  +S  ++ +L+ C  + 
Sbjct: 123 VGFARNYVMWSSFME---EFENCGGDPIQVLNVFKELHSKGVTFDSGMVTVVLKICIRVM 179

Query: 321 LLQIGEEIHCRAVKFGYYEDIYVATSLIDMYCKSGSLKKAYQVFRKIKNKTVASWNSMIM 142
            L +G E+H   +K G+  D YV ++L+  Y +  SL+ A QVF  + ++    WN  IM
Sbjct: 180 DLWLGLEVHASLIKRGFELDTYVRSALLSYYERCWSLEIANQVFHDMPDRDGLFWNEAIM 239

Query: 141 GFAIHGLGEQAIVLFNEICEAGLQPDSITFTAVLSGCRHSGLIDEG 4
               +     AI LF  +  +  + D+ T   +L  C     ++EG
Sbjct: 240 INLKNERFGNAIELFRGMQFSFAKADASTVLKMLQACGKEEALNEG 285


>ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
            mitochondrial-like [Glycine max]
          Length = 911

 Score =  432 bits (1110), Expect = e-119
 Identities = 206/341 (60%), Positives = 267/341 (78%)
 Frame = -3

Query: 1023 LFQNMELSDIKPELVTWNCLLSGHCLHRAYEKVLKILHRMQSVGLKPNSNSITSAIQAIA 844
            LF+ ME S IKP+++TWN LLSGH L  +YE VL  +  +QS G KP+S SITSA+QA+ 
Sbjct: 320  LFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVI 379

Query: 843  EQRSLNLGKEIHGYVMRSGLDYDVYVGTSLVDMYVKSGSLTKARAVFDLMNYKNVYAWNS 664
            E    NLGKEIHGY+MRS L+YDVYV TSLVDMY+K+  L KA  VF     KN+ AWNS
Sbjct: 380  ELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNS 439

Query: 663  LVSGYAFNGLFEDALELLTRMEQEDIRPDLVTWNGLIFGYSLWGRSKEALLLIRQMKMLG 484
            L+SGY + GLF++A +LL +M++E I+ DLVTWN L+ GYS+ G S+EAL +I ++K LG
Sbjct: 440  LISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIKSLG 499

Query: 483  LNPNVVSWTAIISGCSQMENYKDSLELFLQMQEEGIEPNSTTISSLLRACAGLSLLQIGE 304
            L PNVVSWTA+ISGC Q ENY D+L+ F QMQEE ++PNSTTIS+LLRACAG SLL+ GE
Sbjct: 500  LTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGE 559

Query: 303  EIHCRAVKFGYYEDIYVATSLIDMYCKSGSLKKAYQVFRKIKNKTVASWNSMIMGFAIHG 124
            EIHC ++K G+ +DIY+AT+LIDMY K G LK A++VFR IK KT+  WN M+MG+AI+G
Sbjct: 560  EIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYG 619

Query: 123  LGEQAIVLFNEICEAGLQPDSITFTAVLSGCRHSGLIDEGW 1
             GE+   LF+ +C+ G++PD+ITFTA+LSGC++SGL+ +GW
Sbjct: 620  HGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGW 660



 Score =  194 bits (494), Expect = 2e-47
 Identities = 109/323 (33%), Positives = 167/323 (51%)
 Frame = -3

Query: 975  WNCLLSGHCLHRAYEKVLKILHRMQSVGLKPNSNSITSAIQAIAEQRSLNLGKEIHGYVM 796
            WN ++  +     +E  L++  RMQS   K    +I   +QA  + R+LN GK+IHGYV+
Sbjct: 200  WNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVI 259

Query: 795  RSGLDYDVYVGTSLVDMYVKSGSLTKARAVFDLMNYKNVYAWNSLVSGYAFNGLFEDALE 616
            R G   +  +  S+V MY ++  L  ARAVFD     N+ +WNS++S YA NG    A +
Sbjct: 260  RFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWD 319

Query: 615  LLTRMEQEDIRPDLVTWNGLIFGYSLWGRSKEALLLIRQMKMLGLNPNVVSWTAIISGCS 436
            L   ME   I+PD++TWN L+ G+ L G  +  L  IR ++  G                
Sbjct: 320  LFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAG---------------- 363

Query: 435  QMENYKDSLELFLQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIY 256
                                +P+S +I+S L+A   L    +G+EIH   ++     D+Y
Sbjct: 364  -------------------FKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVY 404

Query: 255  VATSLIDMYCKSGSLKKAYQVFRKIKNKTVASWNSMIMGFAIHGLGEQAIVLFNEICEAG 76
            V TSL+DMY K+  L+KA  VF   KNK + +WNS+I G+   GL + A  L  ++ E G
Sbjct: 405  VCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEG 464

Query: 75   LQPDSITFTAVLSGCRHSGLIDE 7
            ++ D +T+ +++SG   SG  +E
Sbjct: 465  IKADLVTWNSLVSGYSMSGCSEE 487



 Score =  103 bits (256), Expect = 9e-20
 Identities = 57/205 (27%), Positives = 95/205 (46%)
 Frame = -3

Query: 996  IKPELVTWNCLLSGHCLHRAYEKVLKILHRMQSVGLKPNSNSITSAIQAIAEQRSLNLGK 817
            + P +V+W  ++SG C +  Y   L+   +MQ   +KPNS +I++ ++A A    L  G+
Sbjct: 500  LTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGE 559

Query: 816  EIHGYVMRSGLDYDVYVGTSLVDMYVKSGSLTKARAVFDLMNYKNVYAWNSLVSGYAFNG 637
            EIH + M+ G   D+Y+ T+L+DMY K G L  A  VF  +  K                
Sbjct: 560  EIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKT--------------- 604

Query: 636  LFEDALELLTRMEQEDIRPDLVTWNGLIFGYSLWGRSKEALLLIRQMKMLGLNPNVVSWT 457
                                L  WN ++ GY+++G  +E   L   M   G+ P+ +++T
Sbjct: 605  --------------------LPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFT 644

Query: 456  AIISGCSQMENYKDSLELFLQMQEE 382
            A++SGC       D  + F  M+ +
Sbjct: 645  ALLSGCKNSGLVMDGWKYFDSMKTD 669



 Score = 66.2 bits (160), Expect = 1e-08
 Identities = 48/207 (23%), Positives = 101/207 (48%), Gaps = 2/207 (0%)
 Frame = -3

Query: 618 ELLTRMEQEDIRPDLVTWNG-LIFGYSLWGRSKEALLLIRQMKMLGLNPNVVSWTAIISG 442
           EL  +M +   + +LVT +G ++  Y  +G  + A  +      +G   N + W + +  
Sbjct: 49  ELHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFESATKVF----FVGFARNYLLWNSFLEE 104

Query: 441 CSQME-NYKDSLELFLQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYE 265
            +    +  + LE+F ++ ++G++ +S  ++ +L+ C  L  L +G E+H   +K G+  
Sbjct: 105 FASFGGDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQV 164

Query: 264 DIYVATSLIDMYCKSGSLKKAYQVFRKIKNKTVASWNSMIMGFAIHGLGEQAIVLFNEIC 85
           D++++ +LI++Y K   + +A QVF +   +    WN+++M        E A+ L   + 
Sbjct: 165 DVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQ 224

Query: 84  EAGLQPDSITFTAVLSGCRHSGLIDEG 4
            A  +    T   +L  C     ++EG
Sbjct: 225 SASAKATDGTIVKLLQACGKLRALNEG 251


>ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
            mitochondrial-like [Glycine max]
          Length = 911

 Score =  427 bits (1099), Expect = e-117
 Identities = 204/341 (59%), Positives = 265/341 (77%)
 Frame = -3

Query: 1023 LFQNMELSDIKPELVTWNCLLSGHCLHRAYEKVLKILHRMQSVGLKPNSNSITSAIQAIA 844
            L Q ME S +KP+++TWN LLSGH L  +YE VL     +QS G KP+S SITSA+QA+ 
Sbjct: 320  LLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVI 379

Query: 843  EQRSLNLGKEIHGYVMRSGLDYDVYVGTSLVDMYVKSGSLTKARAVFDLMNYKNVYAWNS 664
                 NLGKEIHGY+MRS L+YDVYV TSLVD Y+K+  L KA  VF     KN+ AWNS
Sbjct: 380  GLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNS 439

Query: 663  LVSGYAFNGLFEDALELLTRMEQEDIRPDLVTWNGLIFGYSLWGRSKEALLLIRQMKMLG 484
            L+SGY + GLF++A +LL +M++E I+PDLVTWN L+ GYS+ GRS+EAL +I ++K LG
Sbjct: 440  LISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSLG 499

Query: 483  LNPNVVSWTAIISGCSQMENYKDSLELFLQMQEEGIEPNSTTISSLLRACAGLSLLQIGE 304
            L PNVVSWTA+ISGC Q ENY D+L+ F QMQEE ++PNSTTI +LLRACAG SLL+IGE
Sbjct: 500  LTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGE 559

Query: 303  EIHCRAVKFGYYEDIYVATSLIDMYCKSGSLKKAYQVFRKIKNKTVASWNSMIMGFAIHG 124
            EIHC +++ G+ +DIY+AT+LIDMY K G LK A++VFR IK KT+  WN M+MG+AI+G
Sbjct: 560  EIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYG 619

Query: 123  LGEQAIVLFNEICEAGLQPDSITFTAVLSGCRHSGLIDEGW 1
             GE+   LF+E+ + G++PD+ITFTA+LSGC++SGL+ +GW
Sbjct: 620  HGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGW 660



 Score =  196 bits (497), Expect = 1e-47
 Identities = 108/323 (33%), Positives = 164/323 (50%)
 Frame = -3

Query: 975  WNCLLSGHCLHRAYEKVLKILHRMQSVGLKPNSNSITSAIQAIAEQRSLNLGKEIHGYVM 796
            WN ++  +     +E  L++  RMQS   K    +I   +QA  + R+LN GK+IHGYV+
Sbjct: 200  WNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVI 259

Query: 795  RSGLDYDVYVGTSLVDMYVKSGSLTKARAVFDLMNYKNVYAWNSLVSGYAFNGLFEDALE 616
            R G   +  +  S+V MY ++  L  AR  FD     N  +WNS++S YA N     A +
Sbjct: 260  RFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWD 319

Query: 615  LLTRMEQEDIRPDLVTWNGLIFGYSLWGRSKEALLLIRQMKMLGLNPNVVSWTAIISGCS 436
            LL  ME   ++PD++TWN L+ G+ L G  +  L   R +                    
Sbjct: 320  LLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSL-------------------- 359

Query: 435  QMENYKDSLELFLQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIY 256
                           Q  G +P+S +I+S L+A  GL    +G+EIH   ++     D+Y
Sbjct: 360  ---------------QSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVY 404

Query: 255  VATSLIDMYCKSGSLKKAYQVFRKIKNKTVASWNSMIMGFAIHGLGEQAIVLFNEICEAG 76
            V TSL+D Y K+  L KA  VF   KNK + +WNS+I G+   GL + A  L N++ E G
Sbjct: 405  VCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEG 464

Query: 75   LQPDSITFTAVLSGCRHSGLIDE 7
            ++PD +T+ +++SG   SG  +E
Sbjct: 465  IKPDLVTWNSLVSGYSMSGRSEE 487



 Score =  106 bits (265), Expect = 8e-21
 Identities = 58/205 (28%), Positives = 97/205 (47%)
 Frame = -3

Query: 996  IKPELVTWNCLLSGHCLHRAYEKVLKILHRMQSVGLKPNSNSITSAIQAIAEQRSLNLGK 817
            + P +V+W  ++SG C +  Y   L+   +MQ   +KPNS +I + ++A A    L +G+
Sbjct: 500  LTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGE 559

Query: 816  EIHGYVMRSGLDYDVYVGTSLVDMYVKSGSLTKARAVFDLMNYKNVYAWNSLVSGYAFNG 637
            EIH + MR G   D+Y+ T+L+DMY K G L  A  VF  +  K                
Sbjct: 560  EIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKT--------------- 604

Query: 636  LFEDALELLTRMEQEDIRPDLVTWNGLIFGYSLWGRSKEALLLIRQMKMLGLNPNVVSWT 457
                                L  WN ++ GY+++G  +E   L  +M+  G+ P+ +++T
Sbjct: 605  --------------------LPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFT 644

Query: 456  AIISGCSQMENYKDSLELFLQMQEE 382
            A++SGC       D  + F  M+ +
Sbjct: 645  ALLSGCKNSGLVMDGWKYFDSMKTD 669



 Score = 67.0 bits (162), Expect = 7e-09
 Identities = 47/194 (24%), Positives = 95/194 (48%), Gaps = 2/194 (1%)
 Frame = -3

Query: 579 DLVTWNG-LIFGYSLWGRSKEALLLIRQMKMLGLNPNVVSWTAIISGCSQME-NYKDSLE 406
           +LVT +G ++  Y  +G  + A  +      +G   N + W + I   +    +  + L 
Sbjct: 62  NLVTMDGSMMRNYLQFGDFESATKVF----FVGFARNYLLWNSFIEEFASFGGDSHEILA 117

Query: 405 LFLQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIYVATSLIDMYC 226
           +F ++ ++G++ +S  ++ +L+ C  L  L +G E+H   VK G++ D++++ +LI++Y 
Sbjct: 118 VFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYE 177

Query: 225 KSGSLKKAYQVFRKIKNKTVASWNSMIMGFAIHGLGEQAIVLFNEICEAGLQPDSITFTA 46
           K   +  A QVF +   +    WN+++M        E A+ LF  +  A  +    T   
Sbjct: 178 KYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVK 237

Query: 45  VLSGCRHSGLIDEG 4
           +L  C     ++EG
Sbjct: 238 LLQACGKLRALNEG 251


>ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355503672|gb|AES84875.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 561

 Score =  377 bits (968), Expect = e-102
 Identities = 182/309 (58%), Positives = 238/309 (77%)
 Frame = -3

Query: 927 VLKILHRMQSVGLKPNSNSITSAIQAIAEQRSLNLGKEIHGYVMRSGLDYDVYVGTSLVD 748
           VL     + S+G KP+S S+TSA+QA+ E     LGKEIHGY+MRS L+YDVYV TSLVD
Sbjct: 2   VLTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVD 61

Query: 747 MYVKSGSLTKARAVFDLMNYKNVYAWNSLVSGYAFNGLFEDALELLTRMEQEDIRPDLVT 568
           MYVK+  L KA+AV      KNV AWNSL+SGY+F G F +A++LL +M +E I PDLVT
Sbjct: 62  MYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVT 121

Query: 567 WNGLIFGYSLWGRSKEALLLIRQMKMLGLNPNVVSWTAIISGCSQMENYKDSLELFLQMQ 388
           WNGL+ GYS+ GR  EAL +I ++K  G+ PNVVSWTA+ISGCSQ E Y D+L++F QMQ
Sbjct: 122 WNGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQ 181

Query: 387 EEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIYVATSLIDMYCKSGSLK 208
            E ++PNSTTI SLL ACAG SLL+ GEE+HC ++K G+ +DIYVAT+LIDMY ++G LK
Sbjct: 182 AENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLK 241

Query: 207 KAYQVFRKIKNKTVASWNSMIMGFAIHGLGEQAIVLFNEICEAGLQPDSITFTAVLSGCR 28
            AY VF KI+ KT+  WN M+MG+AIH  GE+ ++L++++ E  ++PD+ITFTA+LS C+
Sbjct: 242 VAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACK 301

Query: 27  HSGLIDEGW 1
           +SGL+DEGW
Sbjct: 302 NSGLVDEGW 310



 Score =  111 bits (278), Expect = 2e-22
 Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 1/231 (0%)
 Frame = -3

Query: 1023 LFQNMELSDIKPELVTWNCLLSGHCLHRAYEKVLKILHRMQSVGLKPNSNSITSAIQAIA 844
            +   ++ S I P +V+W  L+SG   +  Y   LKI  +MQ+  +KPNS +I S + A A
Sbjct: 141  IINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQAENVKPNSTTICSLLCACA 200

Query: 843  EQRSLNLGKEIHGYVMRSGLDYDVYVGTSLVDMYVKSGSLTKARAVFDLMNYKNVYAWNS 664
                L  G+E+H + M+ G   D+YV T+L+DMY ++G L  A  VF+ +  K +  WN 
Sbjct: 201  GPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKVAYNVFNKIQEKTLPCWNC 260

Query: 663  LVSGYAFNGLFEDALELLTRMEQEDIRPDLVTWNGLIFGYSLWGRSKEALLLIRQMKM-L 487
            ++ GYA +   E+ + L  +M +  IRPD +T+  L+      G   E       M+   
Sbjct: 261  MMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACKNSGLVDEGWKYFDSMQEDY 320

Query: 486  GLNPNVVSWTAIISGCSQMENYKDSLELFLQMQEEGIEPNSTTISSLLRAC 334
             + P +  +  ++    +   + D    F++     I+P+++   +LL +C
Sbjct: 321  NIVPTIEHYCCMVDLLGK-SGFLDEASHFIETMP--IKPDASIWGALLASC 368



 Score = 65.1 bits (157), Expect = 3e-08
 Identities = 66/295 (22%), Positives = 125/295 (42%), Gaps = 12/295 (4%)
 Frame = -3

Query: 975 WNCLLSGHCLHRAYEKVLKILHRMQSVGLKPNSNSITSAIQAIAEQRSLNLGKEIHGYVM 796
           WN L+SG+     + + +K+L++M   G+ P+  +    +   + Q  ++    I   + 
Sbjct: 87  WNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTWNGLVSGYSMQGRIDEALTIINRIK 146

Query: 795 RSGLDYDVYVGTSLVDMYVKSGSLTKARAVFDLMNYKNVYAWN----SLVSGYAFNGLFE 628
            SG+  +V   T+L+    ++     A  +F  M  +NV   +    SL+   A   L +
Sbjct: 147 SSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQAENVKPNSTTICSLLCACAGPSLLK 206

Query: 627 DALELLTRMEQEDIRPDLVTWNGLIFGYSLWGRSKEALLLIRQMKMLGLNPNVVSWTAII 448
              EL     +     D+     LI  YS  G+ K A  +  +++       +  W  ++
Sbjct: 207 KGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKVAYNVFNKIQ----EKTLPCWNCMM 262

Query: 447 SGCSQMENYKDSLELFLQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYY 268
            G +   + ++ + L+ +M+E  I P++ T ++LL AC    L+  G +       F   
Sbjct: 263 MGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACKNSGLVDEGWKY------FDSM 316

Query: 267 EDIYVATSLIDMYC-------KSGSLKKAYQVFRKIKNKTVAS-WNSMIMGFAIH 127
           ++ Y     I+ YC       KSG L +A      +  K  AS W +++    IH
Sbjct: 317 QEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIWGALLASCKIH 371