BLASTX nr result
ID: Coptis24_contig00020369
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00020369 (568 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_001031452.1| elongation factor-like protein [Arabidopsis ... 254 7e-66 dbj|BAD43027.1| putative GTP-binding protein [Arabidopsis thaliana] 254 7e-66 dbj|BAD94132.1| putative GTP-binding protein [Arabidopsis thaliana] 254 7e-66 ref|XP_003539953.1| PREDICTED: GTP-binding protein TypA/BipA hom... 253 2e-65 ref|XP_002881151.1| GTP binding protein [Arabidopsis lyrata subs... 251 8e-65 >ref|NP_001031452.1| elongation factor-like protein [Arabidopsis thaliana] gi|330253391|gb|AEC08485.1| elongation factor-like protein [Arabidopsis thaliana] Length = 667 Score = 254 bits (649), Expect = 7e-66 Identities = 141/190 (74%), Positives = 152/190 (80%), Gaps = 8/190 (4%) Frame = -2 Query: 546 ANPLLRSLFSSTTTRV------PMSFLHRITS-RSFSASPASTTKP-LLDRYLDPGRIRN 391 A PLLRSL+S+TT R P F + ++S RSFSA+ AST + LDP R+RN Sbjct: 2 AGPLLRSLWSNTTRRSFSSHSSPSKFGYSLSSLRSFSAATASTAAAGAPNSSLDPNRLRN 61 Query: 390 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITISSKVTSIPWNDNELN 211 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSI+LERERGITISSKVTSI W DNELN Sbjct: 62 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSINLERERGITISSKVTSIFWKDNELN 121 Query: 210 MVDTPGHADFXXXXXXXXXXXXGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 31 MVDTPGHADF GAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD Sbjct: 122 MVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 181 Query: 30 RPAVSEERCD 1 RP+V+EERCD Sbjct: 182 RPSVTEERCD 191 >dbj|BAD43027.1| putative GTP-binding protein [Arabidopsis thaliana] Length = 667 Score = 254 bits (649), Expect = 7e-66 Identities = 141/190 (74%), Positives = 152/190 (80%), Gaps = 8/190 (4%) Frame = -2 Query: 546 ANPLLRSLFSSTTTRV------PMSFLHRITS-RSFSASPASTTKP-LLDRYLDPGRIRN 391 A PLLRSL+S+TT R P F + ++S RSFSA+ AST + LDP R+RN Sbjct: 2 AGPLLRSLWSNTTRRSFSSHSSPSKFGYSLSSLRSFSAATASTAAAGAPNSSLDPNRLRN 61 Query: 390 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITISSKVTSIPWNDNELN 211 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSI+LERERGITISSKVTSI W DNELN Sbjct: 62 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSINLERERGITISSKVTSIFWKDNELN 121 Query: 210 MVDTPGHADFXXXXXXXXXXXXGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 31 MVDTPGHADF GAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD Sbjct: 122 MVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 181 Query: 30 RPAVSEERCD 1 RP+V+EERCD Sbjct: 182 RPSVTEERCD 191 >dbj|BAD94132.1| putative GTP-binding protein [Arabidopsis thaliana] Length = 668 Score = 254 bits (649), Expect = 7e-66 Identities = 141/190 (74%), Positives = 152/190 (80%), Gaps = 8/190 (4%) Frame = -2 Query: 546 ANPLLRSLFSSTTTRV------PMSFLHRITS-RSFSASPASTTKP-LLDRYLDPGRIRN 391 A PLLRSL+S+TT R P F + ++S RSFSA+ AST + LDP R+RN Sbjct: 3 AGPLLRSLWSNTTRRSFSSHSSPSKFGYSLSSLRSFSAATASTAAAGAPNSSLDPNRLRN 62 Query: 390 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITISSKVTSIPWNDNELN 211 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSI+LERERGITISSKVTSI W DNELN Sbjct: 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSINLERERGITISSKVTSIFWKDNELN 122 Query: 210 MVDTPGHADFXXXXXXXXXXXXGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 31 MVDTPGHADF GAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD Sbjct: 123 MVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182 Query: 30 RPAVSEERCD 1 RP+V+EERCD Sbjct: 183 RPSVTEERCD 192 >ref|XP_003539953.1| PREDICTED: GTP-binding protein TypA/BipA homolog [Glycine max] Length = 670 Score = 253 bits (646), Expect = 2e-65 Identities = 136/193 (70%), Positives = 146/193 (75%), Gaps = 11/193 (5%) Frame = -2 Query: 546 ANPLLRSLFSSTTTRVPMSFLH-----------RITSRSFSASPASTTKPLLDRYLDPGR 400 A P+LRSL+SST SF R SR+F+A+PA+ T LDP Sbjct: 2 AGPILRSLWSSTRKSFSSSFSSSSSPSAPFSHSRFFSRTFAAAPAAATTATTASSLDPSH 61 Query: 399 IRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITISSKVTSIPWNDN 220 +RNVAVIAHVDHGKTTLMDRLLRQCGAD+PHERAMDSISLERERGITISSKVTS+ W +N Sbjct: 62 LRNVAVIAHVDHGKTTLMDRLLRQCGADLPHERAMDSISLERERGITISSKVTSVSWKEN 121 Query: 219 ELNMVDTPGHADFXXXXXXXXXXXXGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLN 40 ELNMVDTPGHADF GAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLN Sbjct: 122 ELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLN 181 Query: 39 KVDRPAVSEERCD 1 KVDRPAVSEE CD Sbjct: 182 KVDRPAVSEETCD 194 >ref|XP_002881151.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297326990|gb|EFH57410.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata] Length = 667 Score = 251 bits (640), Expect = 8e-65 Identities = 139/190 (73%), Positives = 151/190 (79%), Gaps = 8/190 (4%) Frame = -2 Query: 546 ANPLLRSLFSSTTTRV------PMSFLHRITS-RSFSASPASTTKP-LLDRYLDPGRIRN 391 A PLLRSL+S+TT R P F + ++S RSFSA+ AS+ LDP R+RN Sbjct: 2 AGPLLRSLWSNTTRRSFSSQSSPSKFGYSLSSLRSFSAATASSAAAGAPSSSLDPNRLRN 61 Query: 390 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITISSKVTSIPWNDNELN 211 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSI+LERERGITISSKVTSI W +NELN Sbjct: 62 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSINLERERGITISSKVTSIFWKENELN 121 Query: 210 MVDTPGHADFXXXXXXXXXXXXGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 31 MVDTPGHADF GAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD Sbjct: 122 MVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 181 Query: 30 RPAVSEERCD 1 RP+V+EERCD Sbjct: 182 RPSVTEERCD 191