BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020309
         (1714 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              263   1e-67
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   263   1e-67
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   260   9e-67
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   260   9e-67
ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|2...   251   3e-64

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  263 bits (671), Expect = 1e-67
 Identities = 187/493 (37%), Positives = 255/493 (51%), Gaps = 63/493 (12%)
 Frame = +2

Query: 2    GGSSDWGA----ENAFTESKPSDWGATA-DKFQKQLCLST-EPSEGGPAAGWNAVGS--- 154
            G   DW      E   +  KPS W +   DK   +   ST EP E   +AGW+  G+   
Sbjct: 1377 GSGGDWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWDDKGTWGT 1436

Query: 155  ---QKLPSKETVDTWGKQDEKSDT--NDWVKHVKSQWEKEACDGGPASGWNASESQ---- 307
               Q    + T +   +   + +T  +   +   S W K+  D    +GWN ++ +    
Sbjct: 1437 DKAQNTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWGKKI-DEADKTGWNKNDGKPQMD 1495

Query: 308  KLHSNEPFDAWGKQ--------AGKSNTDG-WVKN-IESQRGQPNESRESESS------- 436
            KL  +  +D    Q         G S+T G W KN ++ +  Q +ES  +E S       
Sbjct: 1496 KLRESYDWDCKVAQEKTTQSTYGGISSTTGDWKKNELQMEVVQHDESPVNEHSWDANLPE 1555

Query: 437  -------KSTGWNT----------IKSSSES---PRTSNWNSLESQETPQM-EPSDPWGK 553
                    S GW++          ++S SE    P   +W+S  +    Q  +P+   G 
Sbjct: 1556 DPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHNVMKEQSNQPASTHGW 1615

Query: 554  KTEETKAGGWSGNDRHAQGVQWNKSPNMNTNSSQEEVNQNANPLNSDG--PSSTNWTKVG 727
             +   K  GW  ND   Q  QWN+  +   N  Q E +    P N     PSS  W    
Sbjct: 1616 DSPGAK--GW--NDVEEQS-QWNQRGSAVKND-QSESSHGWGPSNEQNQLPSSQGWGSPN 1669

Query: 728  Q-TQDEQKRDLPWGPSMMHDQGKK--PSGPRGWGSSNSGEWK-LKNRPAKSPGKW-DEWN 892
                 E +    WG       GKK  P G RGWGS+N+ EWK  KNRP K  G   D+++
Sbjct: 1670 AGAGHESETQSQWG----QPSGKKSRPEGSRGWGSNNT-EWKNKKNRPNKPQGPLNDDYS 1724

Query: 893  GSGNLTATRQRLDQFTSEEQQILSDVEPVIQALQRIMRQPGYKDGNPLSPDDQSYVLENA 1072
              G  TATRQR+D FTSEEQ IL DVEP++Q+++RIM Q GY DG+PLS DDQSY+L+  
Sbjct: 1725 AGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKV 1784

Query: 1073 FNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYRKCVENFIKEKYPE 1252
            FN HPDKAVKMG G+DYVM+ ++S + +SRC+++VSTDG ++DFSYRKC+ENFIKEKYP+
Sbjct: 1785 FNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPD 1844

Query: 1253 MAEAFISKYFRKP 1291
             AE FI KYFR+P
Sbjct: 1845 NAETFIGKYFRRP 1857


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  263 bits (671), Expect = 1e-67
 Identities = 187/493 (37%), Positives = 255/493 (51%), Gaps = 63/493 (12%)
 Frame = +2

Query: 2    GGSSDWGA----ENAFTESKPSDWGATA-DKFQKQLCLST-EPSEGGPAAGWNAVGS--- 154
            G   DW      E   +  KPS W +   DK   +   ST EP E   +AGW+  G+   
Sbjct: 1317 GSGGDWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWDDKGTWGT 1376

Query: 155  ---QKLPSKETVDTWGKQDEKSDT--NDWVKHVKSQWEKEACDGGPASGWNASESQ---- 307
               Q    + T +   +   + +T  +   +   S W K+  D    +GWN ++ +    
Sbjct: 1377 DKAQNTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWGKKI-DEADKTGWNKNDGKPQMD 1435

Query: 308  KLHSNEPFDAWGKQ--------AGKSNTDG-WVKN-IESQRGQPNESRESESS------- 436
            KL  +  +D    Q         G S+T G W KN ++ +  Q +ES  +E S       
Sbjct: 1436 KLRESYDWDCKVAQEKTTQSTYGGISSTTGDWKKNELQMEVVQHDESPVNEHSWDANLPE 1495

Query: 437  -------KSTGWNT----------IKSSSES---PRTSNWNSLESQETPQM-EPSDPWGK 553
                    S GW++          ++S SE    P   +W+S  +    Q  +P+   G 
Sbjct: 1496 DPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHNVMKEQSNQPASTHGW 1555

Query: 554  KTEETKAGGWSGNDRHAQGVQWNKSPNMNTNSSQEEVNQNANPLNSDG--PSSTNWTKVG 727
             +   K  GW  ND   Q  QWN+  +   N  Q E +    P N     PSS  W    
Sbjct: 1556 DSPGAK--GW--NDVEEQS-QWNQRGSAVKND-QSESSHGWGPSNEQNQLPSSQGWGSPN 1609

Query: 728  Q-TQDEQKRDLPWGPSMMHDQGKK--PSGPRGWGSSNSGEWK-LKNRPAKSPGKW-DEWN 892
                 E +    WG       GKK  P G RGWGS+N+ EWK  KNRP K  G   D+++
Sbjct: 1610 AGAGHESETQSQWG----QPSGKKSRPEGSRGWGSNNT-EWKNKKNRPNKPQGPLNDDYS 1664

Query: 893  GSGNLTATRQRLDQFTSEEQQILSDVEPVIQALQRIMRQPGYKDGNPLSPDDQSYVLENA 1072
              G  TATRQR+D FTSEEQ IL DVEP++Q+++RIM Q GY DG+PLS DDQSY+L+  
Sbjct: 1665 AGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKV 1724

Query: 1073 FNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYRKCVENFIKEKYPE 1252
            FN HPDKAVKMG G+DYVM+ ++S + +SRC+++VSTDG ++DFSYRKC+ENFIKEKYP+
Sbjct: 1725 FNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPD 1784

Query: 1253 MAEAFISKYFRKP 1291
             AE FI KYFR+P
Sbjct: 1785 NAETFIGKYFRRP 1797


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  260 bits (664), Expect = 9e-67
 Identities = 156/445 (35%), Positives = 232/445 (52%), Gaps = 27/445 (6%)
 Frame = +2

Query: 44   SKPSDWGATADKFQKQLCLSTEPSEGG--PAAGWNAVGSQKLPSKETVDTWGKQD----E 205
            SK + WG+T           T+ S G     AGWN  G   +  ++  D W ++     E
Sbjct: 1506 SKTNGWGSTGGW--------TKNSGGDHQSEAGWND-GQASMDREKVSDRWDRKATQKLE 1556

Query: 206  KSDTNDW----VKHVKSQWEKEACDGGPA---SGWNASESQKLHSNEPFDAWGKQAGKSN 364
               T+ W    V   K  +  +A D   +     W+  +S +       DAWG+Q  +  
Sbjct: 1557 SHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKSRDV 1616

Query: 365  TDGWVKNIESQRGQPNESRESESSKSTGWNTIKSSSESPRTSNWNSLESQETP-----QM 529
                + N ES         ES      G++ + +  +S  T  W+S E  + P      +
Sbjct: 1617 IKPSLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSL 1676

Query: 530  EPSDPWGKKTEETKAGGWSGNDRHAQGVQWNKSPNMNTNSSQEEVNQNANPLNSDGPSST 709
            E S  WG + +    G W    R ++        + +T  SQ +  +          +S 
Sbjct: 1677 EASQSWGSQNDSL--GSWGQPQRASEECSRESQDDSSTQFSQLKPPE----------TSL 1724

Query: 710  NWTKVGQTQDEQKRDLPWGP-------SMMHDQGKKPSGPRGWGSSNSGEWK-LKNRPAK 865
             W    + Q   +    WG        +  H   KK  G +GWG  N+GEWK  KNRP K
Sbjct: 1725 GW----EQQKSPEVSHGWGSHKESSEQTSSHGWDKKNQGSKGWGG-NAGEWKNRKNRPPK 1779

Query: 866  SPGKW-DEWNGSGNLTATRQRLDQFTSEEQQILSDVEPVIQALQRIMRQPGYKDGNPLSP 1042
            SPG   D+ N     TA+ QRLD FTSEEQ IL+D+EP++Q+++++M Q GY DG+PLS 
Sbjct: 1780 SPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSA 1839

Query: 1043 DDQSYVLENAFNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYRKCV 1222
            +DQS+VL++ FN+HPDKA KMGAG+D+ M+ ++S + +SRC+++V+TDG ++DFSYRKC+
Sbjct: 1840 EDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCL 1899

Query: 1223 ENFIKEKYPEMAEAFISKYFRKPNP 1297
            +NFIK KYP++AE F++KYFRKP P
Sbjct: 1900 DNFIKGKYPDLAEMFVAKYFRKPRP 1924


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  260 bits (664), Expect = 9e-67
 Identities = 156/445 (35%), Positives = 232/445 (52%), Gaps = 27/445 (6%)
 Frame = +2

Query: 44   SKPSDWGATADKFQKQLCLSTEPSEGG--PAAGWNAVGSQKLPSKETVDTWGKQD----E 205
            SK + WG+T           T+ S G     AGWN  G   +  ++  D W ++     E
Sbjct: 1566 SKTNGWGSTGGW--------TKNSGGDHQSEAGWND-GQASMDREKVSDRWDRKATQKLE 1616

Query: 206  KSDTNDW----VKHVKSQWEKEACDGGPA---SGWNASESQKLHSNEPFDAWGKQAGKSN 364
               T+ W    V   K  +  +A D   +     W+  +S +       DAWG+Q  +  
Sbjct: 1617 SHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKSRDV 1676

Query: 365  TDGWVKNIESQRGQPNESRESESSKSTGWNTIKSSSESPRTSNWNSLESQETP-----QM 529
                + N ES         ES      G++ + +  +S  T  W+S E  + P      +
Sbjct: 1677 IKPSLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSL 1736

Query: 530  EPSDPWGKKTEETKAGGWSGNDRHAQGVQWNKSPNMNTNSSQEEVNQNANPLNSDGPSST 709
            E S  WG + +    G W    R ++        + +T  SQ +  +          +S 
Sbjct: 1737 EASQSWGSQNDSL--GSWGQPQRASEECSRESQDDSSTQFSQLKPPE----------TSL 1784

Query: 710  NWTKVGQTQDEQKRDLPWGPSM-------MHDQGKKPSGPRGWGSSNSGEWK-LKNRPAK 865
             W    + Q   +    WG +         H   KK  G +GWG  N+GEWK  KNRP K
Sbjct: 1785 GW----EQQKSPEVSHGWGSNKESSEQTSSHGWDKKNQGSKGWGG-NAGEWKNRKNRPPK 1839

Query: 866  SPGKW-DEWNGSGNLTATRQRLDQFTSEEQQILSDVEPVIQALQRIMRQPGYKDGNPLSP 1042
            SPG   D+ N     TA+ QRLD FTSEEQ IL+D+EP++Q+++++M Q GY DG+PLS 
Sbjct: 1840 SPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSA 1899

Query: 1043 DDQSYVLENAFNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYRKCV 1222
            +DQS+VL++ FN+HPDKA KMGAG+D+ M+ ++S + +SRC+++V+TDG ++DFSYRKC+
Sbjct: 1900 EDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCL 1959

Query: 1223 ENFIKEKYPEMAEAFISKYFRKPNP 1297
            +NFIK KYP++AE F++KYFRKP P
Sbjct: 1960 DNFIKGKYPDLAEMFVAKYFRKPRP 1984


>ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|222841358|gb|EEE78905.1|
            predicted protein [Populus trichocarpa]
          Length = 1020

 Score =  251 bits (642), Expect = 3e-64
 Identities = 178/512 (34%), Positives = 248/512 (48%), Gaps = 81/512 (15%)
 Frame = +2

Query: 8    SSDWGA---------ENAFTESKPSD--WGATADKFQ----KQLCLSTEPSEGGPAAGWN 142
            S+DW A         +N F E+  S   WG   D  +    K      E  + G   GW+
Sbjct: 515  SNDWDAGAAWGRKDRDNKFAETNASKSWWGKVTDGDESGQNKSKNKRPEDQDVG-THGWD 573

Query: 143  AVGSQKLPSKETVDTWGKQDEKSDTND---WVKHVKSQWEKEACDGGPASGWNASES--- 304
                 K+   +++  W  +  +  T +   W     S     AC    AS W A  +   
Sbjct: 574  ----DKMSQDQSISGWASKTTQEATTESLGWDSKGNSNPGDAACGWKAASTWGAENTDGD 629

Query: 305  ----QKLHSNEPFDA--WGKQAGKSNTDGW---VKNIESQRG-------------QPNES 418
                +++ SN+   A  WGK      + GW    ++++S RG               N+S
Sbjct: 630  KLWGKEVSSNQADTASGWGKPKSPEISLGWGSTKESVKSDRGWGVSSSGGGRDKKTENQS 689

Query: 419  RESESSKSTGWNTIKSSSESPRTSNWNSLESQETPQMEPSDPWGKKTEETKAGGWSGNDR 598
               +  +S GW    +S+++   S W   +S E  Q      WG   E       SG + 
Sbjct: 690  LAGQGKESGGWGNKVTSNQADTASGWGKPKSSENSQ-----GWGLSKE-------SGKEV 737

Query: 599  HAQGVQ----WNKSPNMNTNSSQEEVNQ-------NANPLNSDGPSSTNWTKV------- 724
            H  GV      N S   N N +Q  V Q       N    N +G +S  W K        
Sbjct: 738  HEWGVPNSAGGNGSETNNNNENQSLVEQGKESGWDNKASSNQEGTAS-GWGKPKSPALSE 796

Query: 725  --GQTQDEQK-----------------RDLPWGPSMMHDQGKKPSGPRGWGSSNSGEWKL 847
              G  ++  K                 RD  WG      +  +  G RGWGS+N G+WK 
Sbjct: 797  GWGSPREPVKAVHGWGVPNSGGGNGSGRDQQWGQQSREFKKDRFEGSRGWGSNN-GDWKN 855

Query: 848  K-NRPAKSPGKWDEWNGSGNLTATRQRLDQFTSEEQQILSDVEPVIQALQRIMRQPGYKD 1024
            K NRP+K     ++ N SG  T TRQRLD FTS+EQ ILSD+EP++ +++RIM Q GY D
Sbjct: 856  KRNRPSKPH---EDLNASGIFTTTRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTGYND 912

Query: 1025 GNPLSPDDQSYVLENAFNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDF 1204
            G+PLS DDQSYVL+N F+YHPDKAVKMGAG+D+V + ++S + +SRC++IVSTDG + DF
Sbjct: 913  GDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFYIVSTDGCKQDF 972

Query: 1205 SYRKCVENFIKEKYPEMAEAFISKYFRKPNPR 1300
            SYRKC+ENFIK KYP++A+ FI+KYF +   R
Sbjct: 973  SYRKCLENFIKGKYPDLADEFIAKYFARRGNR 1004