BLASTX nr result
ID: Coptis24_contig00020309
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00020309 (1714 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI40152.3| unnamed protein product [Vitis vinifera] 263 1e-67 ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 263 1e-67 ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 260 9e-67 ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 260 9e-67 ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|2... 251 3e-64 >emb|CBI40152.3| unnamed protein product [Vitis vinifera] Length = 1890 Score = 263 bits (671), Expect = 1e-67 Identities = 187/493 (37%), Positives = 255/493 (51%), Gaps = 63/493 (12%) Frame = +2 Query: 2 GGSSDWGA----ENAFTESKPSDWGATA-DKFQKQLCLST-EPSEGGPAAGWNAVGS--- 154 G DW E + KPS W + DK + ST EP E +AGW+ G+ Sbjct: 1377 GSGGDWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWDDKGTWGT 1436 Query: 155 ---QKLPSKETVDTWGKQDEKSDT--NDWVKHVKSQWEKEACDGGPASGWNASESQ---- 307 Q + T + + + +T + + S W K+ D +GWN ++ + Sbjct: 1437 DKAQNTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWGKKI-DEADKTGWNKNDGKPQMD 1495 Query: 308 KLHSNEPFDAWGKQ--------AGKSNTDG-WVKN-IESQRGQPNESRESESS------- 436 KL + +D Q G S+T G W KN ++ + Q +ES +E S Sbjct: 1496 KLRESYDWDCKVAQEKTTQSTYGGISSTTGDWKKNELQMEVVQHDESPVNEHSWDANLPE 1555 Query: 437 -------KSTGWNT----------IKSSSES---PRTSNWNSLESQETPQM-EPSDPWGK 553 S GW++ ++S SE P +W+S + Q +P+ G Sbjct: 1556 DPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHNVMKEQSNQPASTHGW 1615 Query: 554 KTEETKAGGWSGNDRHAQGVQWNKSPNMNTNSSQEEVNQNANPLNSDG--PSSTNWTKVG 727 + K GW ND Q QWN+ + N Q E + P N PSS W Sbjct: 1616 DSPGAK--GW--NDVEEQS-QWNQRGSAVKND-QSESSHGWGPSNEQNQLPSSQGWGSPN 1669 Query: 728 Q-TQDEQKRDLPWGPSMMHDQGKK--PSGPRGWGSSNSGEWK-LKNRPAKSPGKW-DEWN 892 E + WG GKK P G RGWGS+N+ EWK KNRP K G D+++ Sbjct: 1670 AGAGHESETQSQWG----QPSGKKSRPEGSRGWGSNNT-EWKNKKNRPNKPQGPLNDDYS 1724 Query: 893 GSGNLTATRQRLDQFTSEEQQILSDVEPVIQALQRIMRQPGYKDGNPLSPDDQSYVLENA 1072 G TATRQR+D FTSEEQ IL DVEP++Q+++RIM Q GY DG+PLS DDQSY+L+ Sbjct: 1725 AGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKV 1784 Query: 1073 FNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYRKCVENFIKEKYPE 1252 FN HPDKAVKMG G+DYVM+ ++S + +SRC+++VSTDG ++DFSYRKC+ENFIKEKYP+ Sbjct: 1785 FNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPD 1844 Query: 1253 MAEAFISKYFRKP 1291 AE FI KYFR+P Sbjct: 1845 NAETFIGKYFRRP 1857 >ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera] Length = 1830 Score = 263 bits (671), Expect = 1e-67 Identities = 187/493 (37%), Positives = 255/493 (51%), Gaps = 63/493 (12%) Frame = +2 Query: 2 GGSSDWGA----ENAFTESKPSDWGATA-DKFQKQLCLST-EPSEGGPAAGWNAVGS--- 154 G DW E + KPS W + DK + ST EP E +AGW+ G+ Sbjct: 1317 GSGGDWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWDDKGTWGT 1376 Query: 155 ---QKLPSKETVDTWGKQDEKSDT--NDWVKHVKSQWEKEACDGGPASGWNASESQ---- 307 Q + T + + + +T + + S W K+ D +GWN ++ + Sbjct: 1377 DKAQNTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWGKKI-DEADKTGWNKNDGKPQMD 1435 Query: 308 KLHSNEPFDAWGKQ--------AGKSNTDG-WVKN-IESQRGQPNESRESESS------- 436 KL + +D Q G S+T G W KN ++ + Q +ES +E S Sbjct: 1436 KLRESYDWDCKVAQEKTTQSTYGGISSTTGDWKKNELQMEVVQHDESPVNEHSWDANLPE 1495 Query: 437 -------KSTGWNT----------IKSSSES---PRTSNWNSLESQETPQM-EPSDPWGK 553 S GW++ ++S SE P +W+S + Q +P+ G Sbjct: 1496 DPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHNVMKEQSNQPASTHGW 1555 Query: 554 KTEETKAGGWSGNDRHAQGVQWNKSPNMNTNSSQEEVNQNANPLNSDG--PSSTNWTKVG 727 + K GW ND Q QWN+ + N Q E + P N PSS W Sbjct: 1556 DSPGAK--GW--NDVEEQS-QWNQRGSAVKND-QSESSHGWGPSNEQNQLPSSQGWGSPN 1609 Query: 728 Q-TQDEQKRDLPWGPSMMHDQGKK--PSGPRGWGSSNSGEWK-LKNRPAKSPGKW-DEWN 892 E + WG GKK P G RGWGS+N+ EWK KNRP K G D+++ Sbjct: 1610 AGAGHESETQSQWG----QPSGKKSRPEGSRGWGSNNT-EWKNKKNRPNKPQGPLNDDYS 1664 Query: 893 GSGNLTATRQRLDQFTSEEQQILSDVEPVIQALQRIMRQPGYKDGNPLSPDDQSYVLENA 1072 G TATRQR+D FTSEEQ IL DVEP++Q+++RIM Q GY DG+PLS DDQSY+L+ Sbjct: 1665 AGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKV 1724 Query: 1073 FNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYRKCVENFIKEKYPE 1252 FN HPDKAVKMG G+DYVM+ ++S + +SRC+++VSTDG ++DFSYRKC+ENFIKEKYP+ Sbjct: 1725 FNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPD 1784 Query: 1253 MAEAFISKYFRKP 1291 AE FI KYFR+P Sbjct: 1785 NAETFIGKYFRRP 1797 >ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis sativus] Length = 1959 Score = 260 bits (664), Expect = 9e-67 Identities = 156/445 (35%), Positives = 232/445 (52%), Gaps = 27/445 (6%) Frame = +2 Query: 44 SKPSDWGATADKFQKQLCLSTEPSEGG--PAAGWNAVGSQKLPSKETVDTWGKQD----E 205 SK + WG+T T+ S G AGWN G + ++ D W ++ E Sbjct: 1506 SKTNGWGSTGGW--------TKNSGGDHQSEAGWND-GQASMDREKVSDRWDRKATQKLE 1556 Query: 206 KSDTNDW----VKHVKSQWEKEACDGGPA---SGWNASESQKLHSNEPFDAWGKQAGKSN 364 T+ W V K + +A D + W+ +S + DAWG+Q + Sbjct: 1557 SHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKSRDV 1616 Query: 365 TDGWVKNIESQRGQPNESRESESSKSTGWNTIKSSSESPRTSNWNSLESQETP-----QM 529 + N ES ES G++ + + +S T W+S E + P + Sbjct: 1617 IKPSLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSL 1676 Query: 530 EPSDPWGKKTEETKAGGWSGNDRHAQGVQWNKSPNMNTNSSQEEVNQNANPLNSDGPSST 709 E S WG + + G W R ++ + +T SQ + + +S Sbjct: 1677 EASQSWGSQNDSL--GSWGQPQRASEECSRESQDDSSTQFSQLKPPE----------TSL 1724 Query: 710 NWTKVGQTQDEQKRDLPWGP-------SMMHDQGKKPSGPRGWGSSNSGEWK-LKNRPAK 865 W + Q + WG + H KK G +GWG N+GEWK KNRP K Sbjct: 1725 GW----EQQKSPEVSHGWGSHKESSEQTSSHGWDKKNQGSKGWGG-NAGEWKNRKNRPPK 1779 Query: 866 SPGKW-DEWNGSGNLTATRQRLDQFTSEEQQILSDVEPVIQALQRIMRQPGYKDGNPLSP 1042 SPG D+ N TA+ QRLD FTSEEQ IL+D+EP++Q+++++M Q GY DG+PLS Sbjct: 1780 SPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSA 1839 Query: 1043 DDQSYVLENAFNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYRKCV 1222 +DQS+VL++ FN+HPDKA KMGAG+D+ M+ ++S + +SRC+++V+TDG ++DFSYRKC+ Sbjct: 1840 EDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCL 1899 Query: 1223 ENFIKEKYPEMAEAFISKYFRKPNP 1297 +NFIK KYP++AE F++KYFRKP P Sbjct: 1900 DNFIKGKYPDLAEMFVAKYFRKPRP 1924 >ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit 1-like [Cucumis sativus] Length = 2019 Score = 260 bits (664), Expect = 9e-67 Identities = 156/445 (35%), Positives = 232/445 (52%), Gaps = 27/445 (6%) Frame = +2 Query: 44 SKPSDWGATADKFQKQLCLSTEPSEGG--PAAGWNAVGSQKLPSKETVDTWGKQD----E 205 SK + WG+T T+ S G AGWN G + ++ D W ++ E Sbjct: 1566 SKTNGWGSTGGW--------TKNSGGDHQSEAGWND-GQASMDREKVSDRWDRKATQKLE 1616 Query: 206 KSDTNDW----VKHVKSQWEKEACDGGPA---SGWNASESQKLHSNEPFDAWGKQAGKSN 364 T+ W V K + +A D + W+ +S + DAWG+Q + Sbjct: 1617 SHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKSRDV 1676 Query: 365 TDGWVKNIESQRGQPNESRESESSKSTGWNTIKSSSESPRTSNWNSLESQETP-----QM 529 + N ES ES G++ + + +S T W+S E + P + Sbjct: 1677 IKPSLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSL 1736 Query: 530 EPSDPWGKKTEETKAGGWSGNDRHAQGVQWNKSPNMNTNSSQEEVNQNANPLNSDGPSST 709 E S WG + + G W R ++ + +T SQ + + +S Sbjct: 1737 EASQSWGSQNDSL--GSWGQPQRASEECSRESQDDSSTQFSQLKPPE----------TSL 1784 Query: 710 NWTKVGQTQDEQKRDLPWGPSM-------MHDQGKKPSGPRGWGSSNSGEWK-LKNRPAK 865 W + Q + WG + H KK G +GWG N+GEWK KNRP K Sbjct: 1785 GW----EQQKSPEVSHGWGSNKESSEQTSSHGWDKKNQGSKGWGG-NAGEWKNRKNRPPK 1839 Query: 866 SPGKW-DEWNGSGNLTATRQRLDQFTSEEQQILSDVEPVIQALQRIMRQPGYKDGNPLSP 1042 SPG D+ N TA+ QRLD FTSEEQ IL+D+EP++Q+++++M Q GY DG+PLS Sbjct: 1840 SPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSA 1899 Query: 1043 DDQSYVLENAFNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYRKCV 1222 +DQS+VL++ FN+HPDKA KMGAG+D+ M+ ++S + +SRC+++V+TDG ++DFSYRKC+ Sbjct: 1900 EDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCL 1959 Query: 1223 ENFIKEKYPEMAEAFISKYFRKPNP 1297 +NFIK KYP++AE F++KYFRKP P Sbjct: 1960 DNFIKGKYPDLAEMFVAKYFRKPRP 1984 >ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|222841358|gb|EEE78905.1| predicted protein [Populus trichocarpa] Length = 1020 Score = 251 bits (642), Expect = 3e-64 Identities = 178/512 (34%), Positives = 248/512 (48%), Gaps = 81/512 (15%) Frame = +2 Query: 8 SSDWGA---------ENAFTESKPSD--WGATADKFQ----KQLCLSTEPSEGGPAAGWN 142 S+DW A +N F E+ S WG D + K E + G GW+ Sbjct: 515 SNDWDAGAAWGRKDRDNKFAETNASKSWWGKVTDGDESGQNKSKNKRPEDQDVG-THGWD 573 Query: 143 AVGSQKLPSKETVDTWGKQDEKSDTND---WVKHVKSQWEKEACDGGPASGWNASES--- 304 K+ +++ W + + T + W S AC AS W A + Sbjct: 574 ----DKMSQDQSISGWASKTTQEATTESLGWDSKGNSNPGDAACGWKAASTWGAENTDGD 629 Query: 305 ----QKLHSNEPFDA--WGKQAGKSNTDGW---VKNIESQRG-------------QPNES 418 +++ SN+ A WGK + GW ++++S RG N+S Sbjct: 630 KLWGKEVSSNQADTASGWGKPKSPEISLGWGSTKESVKSDRGWGVSSSGGGRDKKTENQS 689 Query: 419 RESESSKSTGWNTIKSSSESPRTSNWNSLESQETPQMEPSDPWGKKTEETKAGGWSGNDR 598 + +S GW +S+++ S W +S E Q WG E SG + Sbjct: 690 LAGQGKESGGWGNKVTSNQADTASGWGKPKSSENSQ-----GWGLSKE-------SGKEV 737 Query: 599 HAQGVQ----WNKSPNMNTNSSQEEVNQ-------NANPLNSDGPSSTNWTKV------- 724 H GV N S N N +Q V Q N N +G +S W K Sbjct: 738 HEWGVPNSAGGNGSETNNNNENQSLVEQGKESGWDNKASSNQEGTAS-GWGKPKSPALSE 796 Query: 725 --GQTQDEQK-----------------RDLPWGPSMMHDQGKKPSGPRGWGSSNSGEWKL 847 G ++ K RD WG + + G RGWGS+N G+WK Sbjct: 797 GWGSPREPVKAVHGWGVPNSGGGNGSGRDQQWGQQSREFKKDRFEGSRGWGSNN-GDWKN 855 Query: 848 K-NRPAKSPGKWDEWNGSGNLTATRQRLDQFTSEEQQILSDVEPVIQALQRIMRQPGYKD 1024 K NRP+K ++ N SG T TRQRLD FTS+EQ ILSD+EP++ +++RIM Q GY D Sbjct: 856 KRNRPSKPH---EDLNASGIFTTTRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTGYND 912 Query: 1025 GNPLSPDDQSYVLENAFNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDF 1204 G+PLS DDQSYVL+N F+YHPDKAVKMGAG+D+V + ++S + +SRC++IVSTDG + DF Sbjct: 913 GDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFYIVSTDGCKQDF 972 Query: 1205 SYRKCVENFIKEKYPEMAEAFISKYFRKPNPR 1300 SYRKC+ENFIK KYP++A+ FI+KYF + R Sbjct: 973 SYRKCLENFIKGKYPDLADEFIAKYFARRGNR 1004