BLASTX nr result

ID: Coptis24_contig00020287 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020287
         (598 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ86690.1| predicted protein [Hordeum vulgare subsp. vulgare]    125   4e-27
gb|ABA95117.1| hAT family dimerisation domain containing protein...   125   7e-27
gb|AAM00967.1|AC021892_31 Putative transposase [Oryza sativa Jap...   123   3e-26
gb|AAM93467.1| Putative transposase [Oryza sativa Japonica Group...   123   3e-26
dbj|BAI39457.1| transposase [Oryza sativa Japonica Group]             123   3e-26

>dbj|BAJ86690.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 331

 Score =  125 bits (315), Expect = 4e-27
 Identities = 69/190 (36%), Positives = 107/190 (56%), Gaps = 4/190 (2%)
 Frame = -3

Query: 563 SIVWKQFDQVSEKDKDGVVIKKPNGKALMKAVCKICSSKLVFGGSSGTTHLKRHMIRCVK 384
           S VWK+++ +     DG+V+          A CK C+  +      GT+ L++H+ RC +
Sbjct: 131 SKVWKEYEPIRV---DGIVVA---------AECKHCARNICAERKHGTSSLRKHLKRCKE 178

Query: 383 RTEC--VGGQTIVGRTETGGIYS--FTFNQERARKETVRYIIREELPFNKVDKPAFKRYM 216
           R +   V GQ         G+    +TFNQ  AR+E +R I+  EL F+ V+   F+R++
Sbjct: 179 RKKVLRVSGQLSASIVSPDGVAMGLWTFNQALARRELMRMIVLHELAFSLVEYDGFRRFV 238

Query: 215 LKAFGPQFKPISRKTLRADMFEMFSKGKDDLKELLKNIPGKVCFTSDMWTSNQVLGYVCL 36
             +  P FK I RKT++ D  + F + K  L+ + KN   K+  T+D+WTSNQ +GY+C+
Sbjct: 239 -SSLNPNFKMICRKTVKDDCMKAFKEEKRILQGMFKNSKSKISLTTDLWTSNQTIGYICI 297

Query: 35  TAHFITEDWK 6
           TAHFI E+WK
Sbjct: 298 TAHFIDEEWK 307


>gb|ABA95117.1| hAT family dimerisation domain containing protein [Oryza sativa
           Japonica Group]
          Length = 595

 Score =  125 bits (313), Expect = 7e-27
 Identities = 64/189 (33%), Positives = 102/189 (53%)
 Frame = -3

Query: 569 KTSIVWKQFDQVSEKDKDGVVIKKPNGKALMKAVCKICSSKLVFGGSSGTTHLKRHMIRC 390
           +TS VW+ FD++ E          P+GK +  A CKIC +KL    SSGT HL RH   C
Sbjct: 61  RTSTVWQNFDEIKETG--------PDGKEVTLARCKICRTKLSGKSSSGTGHLSRHAASC 112

Query: 389 VKRTECVGGQTIVGRTETGGIYSFTFNQERARKETVRYIIREELPFNKVDKPAFKRYMLK 210
            K+      Q  +     G + S+ ++ + AR+   R I R++LP N  +  AF++Y+  
Sbjct: 113 AKKQGIQLRQQQLILNPDGTVRSWEYDPQVARESLTRLIARQDLPLNFGESTAFEKYIQT 172

Query: 209 AFGPQFKPISRKTLRADMFEMFSKGKDDLKELLKNIPGKVCFTSDMWTSNQVLGYVCLTA 30
           A  P+FK +S +T   D+ + + +G+D LKEL       V  TSD+W+      Y+ + A
Sbjct: 173 AHNPRFKSVSSQTTTRDLRKFYKQGRDTLKELFNTCTFSVSITSDIWSGKAKEDYISVVA 232

Query: 29  HFITEDWKL 3
           HF+ ++W++
Sbjct: 233 HFVDDNWEI 241


>gb|AAM00967.1|AC021892_31 Putative transposase [Oryza sativa Japonica Group]
           gi|31431064|gb|AAP52895.1| hAT family dimerisation
           domain containing protein [Oryza sativa Japonica Group]
          Length = 595

 Score =  123 bits (308), Expect = 3e-26
 Identities = 66/189 (34%), Positives = 101/189 (53%)
 Frame = -3

Query: 569 KTSIVWKQFDQVSEKDKDGVVIKKPNGKALMKAVCKICSSKLVFGGSSGTTHLKRHMIRC 390
           +TS VW+ FD++ E          P+G+ + KA C+IC   L    S GT HLKRH   C
Sbjct: 80  RTSGVWQSFDEIKETC--------PDGREVSKARCRICRQILSARSSGGTGHLKRHAESC 131

Query: 389 VKRTECVGGQTIVGRTETGGIYSFTFNQERARKETVRYIIREELPFNKVDKPAFKRYMLK 210
            K+      Q  +     G + S+ ++   AR+  VR I R++LP N  + PAF+ Y+ +
Sbjct: 132 AKKQGIQLRQQQLMLNPDGTVRSWEYDPMVARESLVRLIARQDLPLNFGESPAFEHYIQQ 191

Query: 209 AFGPQFKPISRKTLRADMFEMFSKGKDDLKELLKNIPGKVCFTSDMWTSNQVLGYVCLTA 30
           +  P+FK +SR+T   D+  ++ K    LKEL       VC TSD+W+S     Y+ +  
Sbjct: 192 SHNPRFKAVSRQTSTRDLENVYHKEATALKELFSTCTFSVCVTSDIWSSRAREDYLSVVV 251

Query: 29  HFITEDWKL 3
           HF+ +DW+L
Sbjct: 252 HFVDDDWQL 260


>gb|AAM93467.1| Putative transposase [Oryza sativa Japonica Group]
           gi|31430670|gb|AAP52551.1| hAT family dimerisation
           domain containing protein [Oryza sativa Japonica Group]
          Length = 595

 Score =  123 bits (308), Expect = 3e-26
 Identities = 66/189 (34%), Positives = 101/189 (53%)
 Frame = -3

Query: 569 KTSIVWKQFDQVSEKDKDGVVIKKPNGKALMKAVCKICSSKLVFGGSSGTTHLKRHMIRC 390
           +TS VW+ FD++ E          P+G+ + KA C+IC   L    S GT HLKRH   C
Sbjct: 80  RTSGVWQSFDEIKETC--------PDGREVSKARCRICRQILSARSSGGTGHLKRHAESC 131

Query: 389 VKRTECVGGQTIVGRTETGGIYSFTFNQERARKETVRYIIREELPFNKVDKPAFKRYMLK 210
            K+      Q  +     G + S+ ++   AR+  VR I R++LP N  + PAF+ Y+ +
Sbjct: 132 AKKQGIQLRQQQLMLNPDGTVRSWEYDPMVARESLVRLIARQDLPLNFGESPAFEHYIQQ 191

Query: 209 AFGPQFKPISRKTLRADMFEMFSKGKDDLKELLKNIPGKVCFTSDMWTSNQVLGYVCLTA 30
           +  P+FK +SR+T   D+  ++ K    LKEL       VC TSD+W+S     Y+ +  
Sbjct: 192 SHNPRFKAVSRQTSTRDLENVYHKEATALKELFSTCTFSVCVTSDIWSSRAREDYLSVVV 251

Query: 29  HFITEDWKL 3
           HF+ +DW+L
Sbjct: 252 HFVDDDWQL 260


>dbj|BAI39457.1| transposase [Oryza sativa Japonica Group]
          Length = 672

 Score =  123 bits (308), Expect = 3e-26
 Identities = 66/189 (34%), Positives = 101/189 (53%)
 Frame = -3

Query: 569 KTSIVWKQFDQVSEKDKDGVVIKKPNGKALMKAVCKICSSKLVFGGSSGTTHLKRHMIRC 390
           +TS VW+ FD++ E          P+G+ + KA C+IC   L    S GT HLKRH   C
Sbjct: 46  RTSGVWQSFDEIKETC--------PDGREVSKARCRICRQILSARSSGGTGHLKRHAESC 97

Query: 389 VKRTECVGGQTIVGRTETGGIYSFTFNQERARKETVRYIIREELPFNKVDKPAFKRYMLK 210
            K+      Q  +     G + S+ ++   AR+  VR I R++LP N  + PAF+ Y+ +
Sbjct: 98  AKKQGIQLRQQQLMLNPDGTVRSWEYDPMVARESLVRLIARQDLPLNFGESPAFEHYIQQ 157

Query: 209 AFGPQFKPISRKTLRADMFEMFSKGKDDLKELLKNIPGKVCFTSDMWTSNQVLGYVCLTA 30
           +  P+FK +SR+T   D+  ++ K    LKEL       VC TSD+W+S     Y+ +  
Sbjct: 158 SHNPRFKAVSRQTSTRDLENVYHKEATALKELFSTCTFSVCVTSDIWSSRAREDYLSVVV 217

Query: 29  HFITEDWKL 3
           HF+ +DW+L
Sbjct: 218 HFVDDDWQL 226


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