BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020279
         (675 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634996.1| PREDICTED: F-box protein SKIP27-like [Vitis ...   123   4e-26
ref|XP_002274518.1| PREDICTED: F-box protein At1g61340-like [Vit...   122   8e-26
gb|ADO00336.1| F-box protein [Elaeis guineensis]                      121   1e-25
ref|XP_002305655.1| f-box family protein [Populus trichocarpa] g...   119   7e-25
ref|XP_002316660.1| predicted protein [Populus trichocarpa] gi|2...   115   8e-24

>ref|XP_003634996.1| PREDICTED: F-box protein SKIP27-like [Vitis vinifera]
          Length = 172

 Score =  123 bits (308), Expect = 4e-26
 Identities = 73/163 (44%), Positives = 102/163 (62%), Gaps = 15/163 (9%)
 Frame = +1

Query: 22  RGATEEFDIEYVKRAREIRRKRVMVSLNSSLKTPSKM------KNGGKFV---FNRSIFD 174
           +G  EE  + +    R + RKR++VS N+   +PS +      +  G+ V     +S+ +
Sbjct: 12  KGGDEELGLGFAPVTRSLSRKRILVSSNTESSSPSSVLRTPLKRRCGEMVEEKAEKSMLE 71

Query: 175 SLPQDILIRILCCVDHDDLKQLFKVSKTVKEAALIAKRDHFAYSTPSKM-VFRRFGDMEI 351
           ++PQDILIRILC VDHDDLKQLF VS T+++A LIAK+ HFAYSTPSK+  FR   D E 
Sbjct: 72  AMPQDILIRILCGVDHDDLKQLFHVSNTIRDATLIAKKSHFAYSTPSKVQTFRSPLDPEE 131

Query: 352 ED-----EAPNAPKQDRRNYRKSRIDGKKLGDITVALFHSPEK 465
                  + P+APKQ R  + +SR+ G+KL  I +ALF S E+
Sbjct: 132 SSGFDDLQTPDAPKQSR--HFRSRLRGRKLSGIAIALFSSDEE 172


>ref|XP_002274518.1| PREDICTED: F-box protein At1g61340-like [Vitis vinifera]
          Length = 172

 Score =  122 bits (305), Expect = 8e-26
 Identities = 72/163 (44%), Positives = 103/163 (63%), Gaps = 15/163 (9%)
 Frame = +1

Query: 22  RGATEEFDIEYVKRAREIRRKRVMVSLNSSLKTPSKM------KNGGKFV---FNRSIFD 174
           +G  EE  + +V   R + RKR++VS N+   +PS +      +  G+ V     +S+ +
Sbjct: 12  KGGDEELGLGFVPVTRSLSRKRILVSSNTESSSPSSVLRTPLKRRCGEMVEEKAEKSMLE 71

Query: 175 SLPQDILIRILCCVDHDDLKQLFKVSKTVKEAALIAKRDHFAYSTPSKM-VFRRFGDMEI 351
           ++PQDILIRILC VDHDDLKQLF VS T+++A LIAK+ HFA+STPSK+  FR   D E 
Sbjct: 72  AMPQDILIRILCGVDHDDLKQLFHVSNTIRDATLIAKKSHFAFSTPSKVQTFRSPLDPEE 131

Query: 352 ED-----EAPNAPKQDRRNYRKSRIDGKKLGDITVALFHSPEK 465
                  + P+APKQ R  + +SR+ G++L  I +ALF S E+
Sbjct: 132 SSGFDDLQTPDAPKQSR--HFRSRLRGRRLSGIAIALFSSDEE 172


>gb|ADO00336.1| F-box protein [Elaeis guineensis]
          Length = 178

 Score =  121 bits (304), Expect = 1e-25
 Identities = 77/160 (48%), Positives = 100/160 (62%), Gaps = 14/160 (8%)
 Frame = +1

Query: 46  IEYVKRAREIRRKRVMVS-------LNSSLKTPSKMKNGGK-FVFNRSIFDSLPQDILIR 201
           +++V  +  + RKRV++S        +S L  P + + G + FV   +  +SLPQD+L+R
Sbjct: 16  LKFVPGSCILGRKRVVISDSLDSSNSSSPLSGPLQKRRGARSFVERSNCLESLPQDVLVR 75

Query: 202 ILCCVDHDDLKQLFKVSKTVKEAALIAKRDHFAYSTP-SKMVFRRFG-----DMEIEDEA 363
           ILC V+H DLKQL  VSK V  A LIAK  HFA+STP SK  FRR G     D+E+ +EA
Sbjct: 76  ILCKVNHSDLKQLILVSKIVHGATLIAKEMHFAFSTPSSKPTFRREGNMGDIDLEVSEEA 135

Query: 364 PNAPKQDRRNYRKSRIDGKKLGDITVALFHSPEKQQWRRN 483
           PNAPKQ  R   KSR+ GK L  I VALF SPE  +W +N
Sbjct: 136 PNAPKQ--RRVAKSRLGGKTLSSIAVALFTSPE-DKWPKN 172


>ref|XP_002305655.1| f-box family protein [Populus trichocarpa]
           gi|222848619|gb|EEE86166.1| f-box family protein
           [Populus trichocarpa]
          Length = 189

 Score =  119 bits (297), Expect = 7e-25
 Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 6/131 (4%)
 Frame = +1

Query: 91  MVSLNSSLKTPSKMKNGGKFVFNRSIFDSLPQDILIRILCCVDHDDLKQLFKVSKTVKEA 270
           +++L+S+ K+P  +K        +S  +SLPQDILIR+LC VDHDDLKQLF VSK ++EA
Sbjct: 55  LLNLDSTFKSP--LKRLCSLEPEKSNLESLPQDILIRVLCRVDHDDLKQLFHVSKVIREA 112

Query: 271 ALIAKRDHFAYSTPSK-MVFRRFGDME-----IEDEAPNAPKQDRRNYRKSRIDGKKLGD 432
            LIAK  HFAYSTP K   FR   D+E      E EAPNAPKQ RR+Y KSR++ K + D
Sbjct: 113 TLIAKESHFAYSTPRKSQGFRSPFDLENPGELDEIEAPNAPKQ-RRSY-KSRLNRKSIAD 170

Query: 433 ITVALFHSPEK 465
           ++VALF SP+K
Sbjct: 171 VSVALFASPKK 181


>ref|XP_002316660.1| predicted protein [Populus trichocarpa] gi|222859725|gb|EEE97272.1|
           predicted protein [Populus trichocarpa]
          Length = 189

 Score =  115 bits (288), Expect = 8e-24
 Identities = 80/163 (49%), Positives = 99/163 (60%), Gaps = 15/163 (9%)
 Frame = +1

Query: 22  RGATEEFDIEYVKRAREIRRKRVMVS---------LNSSLKTPSKMKNGGKFVFNRSIFD 174
           RG  E   +++V R+    RKRV+ S         LN      S +K        +S  +
Sbjct: 22  RGEEEGLGLKFV-RSYSFGRKRVLSSNNILNDEDLLNLDSTFISSLKRLRSLKPEKSNLE 80

Query: 175 SLPQDILIRILCCVDHDDLKQLFKVSKTVKEAALIAKRDHFAYSTPSK-MVFRR---FGD 342
           SLPQDILIR+LC VDHDDLKQLF VSK ++EA LIAK  HFAYSTP K   FR    FG+
Sbjct: 81  SLPQDILIRVLCGVDHDDLKQLFHVSKVIREATLIAKEWHFAYSTPRKTQAFRTRIDFGN 140

Query: 343 ME--IEDEAPNAPKQDRRNYRKSRIDGKKLGDITVALFHSPEK 465
                E EAPNAPKQ RR+Y KS ++ K + D++VALF SP+K
Sbjct: 141 PSGLDEIEAPNAPKQ-RRSY-KSLLNRKSIADVSVALFASPKK 181