BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020248
         (426 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinif...    57   1e-06
ref|NP_567295.2| F-box family protein (FBL21) [Arabidopsis thali...    56   3e-06
ref|XP_003541669.1| PREDICTED: F-box protein SKIP19-like [Glycin...    56   3e-06
ref|NP_001061180.1| Os08g0193500 [Oryza sativa Japonica Group] g...    55   5e-06
gb|AFW56944.1| hypothetical protein ZEAMMB73_410015 [Zea mays]         55   5e-06

>ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinifera]
           gi|147853333|emb|CAN82327.1| hypothetical protein
           VITISV_041807 [Vitis vinifera]
           gi|297740788|emb|CBI30970.3| unnamed protein product
           [Vitis vinifera]
          Length = 321

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/103 (29%), Positives = 54/103 (52%)
 Frame = -3

Query: 316 EGRSKVKATMKRSWEDLDGDILLSIYARLCVTDIILGASLCCSFWYKVSKEPSLWRDVDL 137
           +  S+ +   +R+W++L  D+   I ++L   +I+  A   CSFW K+ +EP +WR++D+
Sbjct: 7   DSTSREEEEEERNWQELPRDVTSMILSKLNAVEILSSAQFVCSFWRKLCREPMMWRNIDM 66

Query: 136 SCFDFIEEKDVSPGPFIRLVVTRSQGSITSITFPLDASSDDLL 8
                + +         R  V RS G + SI    D ++D+LL
Sbjct: 67  HNLGDLCDLGYDLEEMARHAVDRSGGQLLSICID-DFATDNLL 108


>ref|NP_567295.2| F-box family protein (FBL21) [Arabidopsis thaliana]
           gi|75264541|sp|Q9M0U8.1|FBL21_ARATH RecName:
           Full=Putative F-box/LRR-repeat protein 21
           gi|7267307|emb|CAB81089.1| N7-like protein [Arabidopsis
           thaliana] gi|332657124|gb|AEE82524.1| F-box family
           protein (FBL21) [Arabidopsis thaliana]
          Length = 304

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
 Frame = -3

Query: 343 LNMSLADFGEGRSKVKATM----------KRSWEDLDGDILLSIYARLCVTDIILGASLC 194
           L++ + +  EGR+K   T           +R+W DL  ++  SI  RL +TDI+  A   
Sbjct: 14  LSLFMKEDEEGRNKKTTTSTTLESLLMKERRNWVDLPPELTTSILLRLSLTDILDNAQKV 73

Query: 193 CSFWYKVSKEPSLWRDVD-----LSCFDFIEEKDVSPGPFIRLVVTRSQGSITSITFPLD 29
           C  W ++ K+PS+WR ++     +  FDF+           R +V  SQG +  I     
Sbjct: 74  CKEWRRICKDPSMWRKINTRDCLMYNFDFVS--------MCRHIVDLSQGGLLEINVDEH 125

Query: 28  ASSDDLL 8
             SD LL
Sbjct: 126 FLSDSLL 132


>ref|XP_003541669.1| PREDICTED: F-box protein SKIP19-like [Glycine max]
          Length = 311

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 25/57 (43%), Positives = 36/57 (63%)
 Frame = -3

Query: 307 SKVKATMKRSWEDLDGDILLSIYARLCVTDIILGASLCCSFWYKVSKEPSLWRDVDL 137
           SK  A  +R+W DL  D+L +I+ +L  T+I+  A   CS W  +SKEP LWR +D+
Sbjct: 4   SKEAAAEERNWLDLPRDVLCTIFQKLGATEILTRAQGVCSVWRAISKEPLLWRTIDM 60


>ref|NP_001061180.1| Os08g0193500 [Oryza sativa Japonica Group]
           gi|40253668|dbj|BAD05611.1| glutamic acid-rich protein
           precursor-like protein [Oryza sativa Japonica Group]
           gi|113623149|dbj|BAF23094.1| Os08g0193500 [Oryza sativa
           Japonica Group]
          Length = 447

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = -3

Query: 283 RSWEDLDGDILLSIYARLCVTDIILGASLCCSFWYKVSKEPSLWRDVDLSCFDFIEEKDV 104
           R W DL  D L +I+ +L   ++++GA L C  W   +K P LWR VD++    +  K +
Sbjct: 14  RDWSDLPTDALSTIFMKLGSIEVLMGAGLVCHSWLAAAKSPELWRSVDMTRHKVVFSKGI 73

Query: 103 -SPGPFIRLVVTRSQGSITS 47
            +     ++ + RSQG + S
Sbjct: 74  DTMCAMAKVAIDRSQGKMES 93


>gb|AFW56944.1| hypothetical protein ZEAMMB73_410015 [Zea mays]
          Length = 264

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
 Frame = -3

Query: 283 RSWEDLDGDILLSIYARLCVTDIILGASLCCSFWYKVSKEPSLWRDVDLSCFDFIEEK-- 110
           R W +L  D L+ ++ RL   +I++G+ L C  W + +KEP LW  +D++    +EE   
Sbjct: 17  RDWSELSLDALVLVFGRLGPVEILMGSGLVCRSWLQAAKEPELWASLDMASHRAVEEMGG 76

Query: 109 DVSPGPFIRLVVTRSQGSI 53
           DV  G   R+ V RS+G +
Sbjct: 77  DVLRG-MARVAVGRSRGRL 94