BLASTX nr result
ID: Coptis24_contig00020207
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00020207 (250 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002314059.1| predicted protein [Populus trichocarpa] gi|2... 72 5e-11 ref|XP_002271688.2| PREDICTED: F-box/WD-40 repeat-containing pro... 70 2e-10 emb|CBI24978.3| unnamed protein product [Vitis vinifera] 70 2e-10 emb|CAN61154.1| hypothetical protein VITISV_013775 [Vitis vinifera] 70 2e-10 ref|XP_003599502.1| F-box/WD-40 repeat-containing protein [Medic... 67 2e-09 >ref|XP_002314059.1| predicted protein [Populus trichocarpa] gi|222850467|gb|EEE88014.1| predicted protein [Populus trichocarpa] Length = 444 Score = 72.0 bits (175), Expect = 5e-11 Identities = 31/46 (67%), Positives = 39/46 (84%) Frame = +1 Query: 7 RKLPEDAHLHSIPKHLRPPITCLAVGMKKVVTTHNSKIIRLWKFNN 144 ++LP D ++ IPK +RPPITCLAVGM+KV+TTHN K IR+WKFNN Sbjct: 394 KRLPYDYNIDRIPKTVRPPITCLAVGMQKVITTHNIKNIRMWKFNN 439 >ref|XP_002271688.2| PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Vitis vinifera] Length = 421 Score = 70.1 bits (170), Expect = 2e-10 Identities = 31/45 (68%), Positives = 37/45 (82%) Frame = +1 Query: 7 RKLPEDAHLHSIPKHLRPPITCLAVGMKKVVTTHNSKIIRLWKFN 141 R++ ED + SIPK RPPITCLAVGM+KVVTTHN K IR+WKF+ Sbjct: 370 RRITEDTLIDSIPKSSRPPITCLAVGMQKVVTTHNGKYIRMWKFH 414 >emb|CBI24978.3| unnamed protein product [Vitis vinifera] Length = 435 Score = 70.1 bits (170), Expect = 2e-10 Identities = 31/45 (68%), Positives = 37/45 (82%) Frame = +1 Query: 7 RKLPEDAHLHSIPKHLRPPITCLAVGMKKVVTTHNSKIIRLWKFN 141 R++ ED + SIPK RPPITCLAVGM+KVVTTHN K IR+WKF+ Sbjct: 384 RRITEDTLIDSIPKSSRPPITCLAVGMQKVVTTHNGKYIRMWKFH 428 >emb|CAN61154.1| hypothetical protein VITISV_013775 [Vitis vinifera] Length = 471 Score = 70.1 bits (170), Expect = 2e-10 Identities = 31/45 (68%), Positives = 37/45 (82%) Frame = +1 Query: 7 RKLPEDAHLHSIPKHLRPPITCLAVGMKKVVTTHNSKIIRLWKFN 141 R++ ED + SIPK RPPITCLAVGM+KVVTTHN K IR+WKF+ Sbjct: 420 RRITEDTLIDSIPKSSRPPITCLAVGMQKVVTTHNGKYIRMWKFH 464 >ref|XP_003599502.1| F-box/WD-40 repeat-containing protein [Medicago truncatula] gi|355488550|gb|AES69753.1| F-box/WD-40 repeat-containing protein [Medicago truncatula] Length = 438 Score = 66.6 bits (161), Expect = 2e-09 Identities = 30/48 (62%), Positives = 41/48 (85%), Gaps = 2/48 (4%) Frame = +1 Query: 7 RKLPEDAHLH--SIPKHLRPPITCLAVGMKKVVTTHNSKIIRLWKFNN 144 ++LPED +++ +IP++ RP ITCLAVGMKKVVTTHN++ IRLWKF + Sbjct: 385 KRLPEDTYINIDAIPRNSRPSITCLAVGMKKVVTTHNTRDIRLWKFKD 432