BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020198
         (843 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17841.3| unnamed protein product [Vitis vinifera]              278   1e-72
ref|XP_002268721.2| PREDICTED: replication protein A 32 kDa subu...   273   3e-71
emb|CAJ13715.1| putative replication factor A [Capsicum chinense]     248   2e-63
ref|XP_004146319.1| PREDICTED: replication protein A 32 kDa subu...   242   7e-62
gb|AAP58374.1| RPA 32kDa [Pisum sativum]                              231   2e-58

>emb|CBI17841.3| unnamed protein product [Vitis vinifera]
          Length = 277

 Score =  278 bits (711), Expect = 1e-72
 Identities = 147/261 (56%), Positives = 183/261 (70%)
 Frame = -1

Query: 786 SQFDGNAAFSGGGFMPSQSLQSTDPGYSSSSKNRDSQVLLPLTVKQIKDASNPNDEKSXX 607
           SQFDGNAAFSGGGFMPSQ+ Q+ +PG+S + +NRD+Q LLPLTVKQI +A   +D+KS  
Sbjct: 5   SQFDGNAAFSGGGFMPSQATQAAEPGFSPA-RNRDTQALLPLTVKQISEAFLSSDDKSNF 63

Query: 606 XXXXXXXXXIKLVGMVSDRVERATDVSFSIDDGTGRLVCHRWLNESIDSKEMEEIQDGMY 427
                    + LVGMV ++ ER TDV F +DDGTGR+ C+RW+NE++D+KEME I DGMY
Sbjct: 64  LIDGVEVNNVTLVGMVFNKAERVTDVGFMLDDGTGRIDCNRWVNEAVDTKEMEGILDGMY 123

Query: 426 VRVHGALKVFQGKIQLNTFSIRPVTNFNEIAYHFIECIYVHLYNSKLQMKGSAQTQPLAT 247
           VRVHG LK FQGK  LN FSIRPVT+FNEIA HFIECIYVH+YN+K +++    TQ   T
Sbjct: 124 VRVHGHLKGFQGKRHLNVFSIRPVTDFNEIASHFIECIYVHIYNTKSRVQAGGPTQSHVT 183

Query: 246 NASTGRNLSMGYQGAGSTGYQGAVPNQVSEQQYSCDGISGTSKMVLDYLQLPANLAGDAG 67
           N + G  L          GYQ + PNQ S Q  +  G+ G  ++V+DYLQ P +LA D G
Sbjct: 184 NPAIGTPLK---------GYQASQPNQFSGQYGA--GLKGVDQLVIDYLQQPQSLARDQG 232

Query: 66  VHINELAQHLKVPLQKIRESI 4
           V  +ELAQ L VP+ KI ESI
Sbjct: 233 VGRDELAQQLNVPVDKIMESI 253


>ref|XP_002268721.2| PREDICTED: replication protein A 32 kDa subunit [Vitis vinifera]
          Length = 275

 Score =  273 bits (699), Expect = 3e-71
 Identities = 148/261 (56%), Positives = 182/261 (69%)
 Frame = -1

Query: 786 SQFDGNAAFSGGGFMPSQSLQSTDPGYSSSSKNRDSQVLLPLTVKQIKDASNPNDEKSXX 607
           SQFDGNAAFSGGGFMPSQ+ Q+ +PG+S + +NRD+Q LLPLTVKQI +A   +D+KS  
Sbjct: 5   SQFDGNAAFSGGGFMPSQATQAAEPGFSPA-RNRDTQALLPLTVKQISEAFLSSDDKSNF 63

Query: 606 XXXXXXXXXIKLVGMVSDRVERATDVSFSIDDGTGRLVCHRWLNESIDSKEMEEIQDGMY 427
                    + LVGMV ++ ER TDV F +DDGTGR+ C+RW+NE++D+KEME I DGMY
Sbjct: 64  LIDGVEVNNVTLVGMVFNKAERVTDVGFMLDDGTGRIDCNRWVNEAVDTKEMEGILDGMY 123

Query: 426 VRVHGALKVFQGKIQLNTFSIRPVTNFNEIAYHFIECIYVHLYNSKLQMKGSAQTQPLAT 247
           VRVHG LK FQGK  LN FSIRPVT+FNEIA HFIECIYVH+YN+K +  G   TQ   T
Sbjct: 124 VRVHGHLKGFQGKRHLNVFSIRPVTDFNEIASHFIECIYVHIYNTKSRAGG--PTQSHVT 181

Query: 246 NASTGRNLSMGYQGAGSTGYQGAVPNQVSEQQYSCDGISGTSKMVLDYLQLPANLAGDAG 67
           N + G  L          GYQ + PNQ S Q  +  G+ G  ++V+DYLQ P +LA D G
Sbjct: 182 NPAIGTPLK---------GYQASQPNQFSGQYGA--GLKGVDQLVIDYLQQPQSLARDQG 230

Query: 66  VHINELAQHLKVPLQKIRESI 4
           V  +ELAQ L VP+ KI ESI
Sbjct: 231 VGRDELAQQLNVPVDKIMESI 251


>emb|CAJ13715.1| putative replication factor A [Capsicum chinense]
          Length = 299

 Score =  248 bits (632), Expect = 2e-63
 Identities = 130/257 (50%), Positives = 170/257 (66%)
 Frame = -1

Query: 786 SQFDGNAAFSGGGFMPSQSLQSTDPGYSSSSKNRDSQVLLPLTVKQIKDASNPNDEKSXX 607
           +QFDGNAAFSGGGFMPSQ+ Q+      S +KNRDSQ L+PLTVKQI +A   +D+K+  
Sbjct: 25  NQFDGNAAFSGGGFMPSQATQTASDHSFSPTKNRDSQTLIPLTVKQISEAFQSSDDKTNF 84

Query: 606 XXXXXXXXXIKLVGMVSDRVERATDVSFSIDDGTGRLVCHRWLNESIDSKEMEEIQDGMY 427
                    +KLVG++ ++ E  T VSF +DDGTGRL C RW+NE++D+KEME + +G+Y
Sbjct: 85  LIDGVDVNNVKLVGILFNKAEMLTAVSFVVDDGTGRLDCFRWVNEAVDTKEMEALTNGIY 144

Query: 426 VRVHGALKVFQGKIQLNTFSIRPVTNFNEIAYHFIECIYVHLYNSKLQMKGSAQTQPLAT 247
           VRVHG LK FQGK QL  +S+RPV ++NEIA HF E IYVH YNS+L+ +  +       
Sbjct: 145 VRVHGHLKGFQGKKQLMAYSVRPVDDYNEIASHFAEVIYVHSYNSRLRKQQDSSFMSAQV 204

Query: 246 NASTGRNLSMGYQGAGSTGYQGAVPNQVSEQQYSCDGISGTSKMVLDYLQLPANLAGDAG 67
            +S+      GYQ + S  + G          ++ DGI G  KMVLDYLQ P+ LA + G
Sbjct: 205 PSSSFNTPLKGYQASASNQFPG----------FNMDGIGGVHKMVLDYLQQPSCLALEKG 254

Query: 66  VHINELAQHLKVPLQKI 16
           VH NELAQ L+VP +KI
Sbjct: 255 VHRNELAQQLRVPSEKI 271


>ref|XP_004146319.1| PREDICTED: replication protein A 32 kDa subunit B-like [Cucumis
           sativus] gi|449500253|ref|XP_004161048.1| PREDICTED:
           replication protein A 32 kDa subunit B-like [Cucumis
           sativus]
          Length = 277

 Score =  242 bits (618), Expect = 7e-62
 Identities = 139/259 (53%), Positives = 169/259 (65%), Gaps = 2/259 (0%)
 Frame = -1

Query: 786 SQFDGNAAFSGGGFMPSQSLQSTDPGYSSSSKNRDSQVLLPLTVKQIKDASNPNDEKSXX 607
           SQFDGNAAFSGGGFMPSQ+ Q+ D  +S + KNRD Q LLPLTVKQI DA   +D+KS  
Sbjct: 4   SQFDGNAAFSGGGFMPSQTTQAPDHSFSPA-KNRDVQALLPLTVKQINDAFLSSDDKSNF 62

Query: 606 XXXXXXXXXIKLVGMVSDRVERATDVSFSIDDGTGRLVCHRWLNESIDSKEMEEIQDGMY 427
                    +KLVGMV +R  R TDV+F++DDGTGR+ C +W+NE+ DS E+E I DGMY
Sbjct: 63  VIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDGMY 122

Query: 426 VRVHGALKVFQGKIQLNTFSIRPVTNFNEIAYHFIECIYVHLYNSKL--QMKGSAQTQPL 253
           VRVHG LK FQGK  LN FSIRPVT++NEI  HFIE IYVH YN++L  Q   S  TQP 
Sbjct: 123 VRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQPQ 182

Query: 252 ATNASTGRNLSMGYQGAGSTGYQGAVPNQVSEQQYSCDGISGTSKMVLDYLQLPANLAGD 73
            TN S   N  M         YQ  + NQ + Q    D      +MVLD+LQLP +   +
Sbjct: 183 MTNLS---NTPMKV-------YQAPIANQYTGQA-GGDSWKSLEQMVLDFLQLP-SCDSE 230

Query: 72  AGVHINELAQHLKVPLQKI 16
            G H + +AQ LKVPL+K+
Sbjct: 231 RGAHRDVIAQQLKVPLEKL 249


>gb|AAP58374.1| RPA 32kDa [Pisum sativum]
          Length = 273

 Score =  231 bits (589), Expect = 2e-58
 Identities = 123/261 (47%), Positives = 171/261 (65%)
 Frame = -1

Query: 786 SQFDGNAAFSGGGFMPSQSLQSTDPGYSSSSKNRDSQVLLPLTVKQIKDASNPNDEKSXX 607
           SQFD + AFSGGGF  SQ  +S+     + +K+RDSQ L+P+TVKQI +AS   DEKS  
Sbjct: 5   SQFDSSNAFSGGGFTSSQLNESSP----APTKSRDSQGLVPVTVKQISEASQSGDEKSNF 60

Query: 606 XXXXXXXXXIKLVGMVSDRVERATDVSFSIDDGTGRLVCHRWLNESIDSKEMEEIQDGMY 427
                    + LVGMV ++ ER TDV+F +DDGTGR+ C RW+NE+ DSKEMEE+ + MY
Sbjct: 61  AINGVDLTNVTLVGMVYEKTERNTDVNFVLDDGTGRIKCRRWVNETFDSKEMEEVSNDMY 120

Query: 426 VRVHGALKVFQGKIQLNTFSIRPVTNFNEIAYHFIECIYVHLYNSKLQMKGSAQTQPLAT 247
           VRV+G LK FQG  QL  FS+RPVTNF+EI +HFI+CI+ HL  +K++++G+  T P  T
Sbjct: 121 VRVYGNLKSFQGVKQLGAFSVRPVTNFDEIPFHFIDCIHSHLL-AKVKLEGTPSTYP-PT 178

Query: 246 NASTGRNLSMGYQGAGSTGYQGAVPNQVSEQQYSCDGISGTSKMVLDYLQLPANLAGDAG 67
           N+S    +     G+         P+     QYS DG+    K+V+DYLQ  +++  + G
Sbjct: 179 NSSINTPVKSALNGS-------QAPSNPGYTQYSTDGLEDCDKLVIDYLQQHSSMLDERG 231

Query: 66  VHINELAQHLKVPLQKIRESI 4
           +H+ ELA+ LK+PL +IR S+
Sbjct: 232 IHVEELARELKLPLDRIRLSV 252