BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020158
         (268 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-c...    63   2e-08
ref|NP_194836.1| pentatricopeptide repeat-containing protein [Ar...    63   2e-08
ref|XP_002521663.1| pentatricopeptide repeat-containing protein,...    59   3e-07

>sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31070, mitochondrial; Flags: Precursor
          Length = 624

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 26/56 (46%), Positives = 44/56 (78%)
 Frame = +2

Query: 5   LVHRLIASEPDNPASYMLSRMVYAENGDWYGAEEVQKVMRKRGLTKSSGYSQLEPE 172
           + + L+ SEPDNPA+Y+L   ++ E+G+++ AEEV++VM++R L K  G+S++EPE
Sbjct: 555 IANELMKSEPDNPANYVLLSKIHTESGNYHAAEEVRRVMQRRKLNKCYGFSKIEPE 610


>ref|NP_194836.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|2980759|emb|CAA18186.1| putative protein [Arabidopsis
           thaliana] gi|7270009|emb|CAB79825.1| putative protein
           [Arabidopsis thaliana] gi|332660453|gb|AEE85853.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 613

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 26/56 (46%), Positives = 44/56 (78%)
 Frame = +2

Query: 5   LVHRLIASEPDNPASYMLSRMVYAENGDWYGAEEVQKVMRKRGLTKSSGYSQLEPE 172
           + + L+ SEPDNPA+Y+L   ++ E+G+++ AEEV++VM++R L K  G+S++EPE
Sbjct: 544 IANELMKSEPDNPANYVLLSKIHTESGNYHAAEEVRRVMQRRKLNKCYGFSKIEPE 599


>ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539054|gb|EEF40650.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 578

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 25/54 (46%), Positives = 40/54 (74%)
 Frame = +2

Query: 2   QLVHRLIASEPDNPASYMLSRMVYAENGDWYGAEEVQKVMRKRGLTKSSGYSQL 163
           +L   LI SEP N A++ L  M+YAE+G+W+  E+V+++MR +GL+K  G+SQ+
Sbjct: 521 RLAQELIKSEPSNAANHTLLSMIYAESGNWFAVEDVRRLMRVQGLSKCYGFSQV 574