BLASTX nr result
ID: Coptis24_contig00020151
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00020151
(692 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCH50966.1| T4.5 [Malus x robusta] 274 1e-71
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-... 245 5e-63
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 245 7e-63
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 244 9e-63
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 244 2e-62
>emb|CCH50966.1| T4.5 [Malus x robusta]
Length = 1670
Score = 274 bits (700), Expect = 1e-71
Identities = 143/229 (62%), Positives = 178/229 (77%)
Frame = -2
Query: 691 KGFNQQYGFDYLETFSPVVKPTTIRLILSIAVNFN*EIRQLDVSNAFLHGHLKEQVFMKQ 512
KGF+QQ G D+ ETFSPV KPTTIR++LSIAV++ I QLDVSNAFLHGHLKE V+M Q
Sbjct: 1216 KGFHQQEGLDFSETFSPVAKPTTIRILLSIAVSYYWFIHQLDVSNAFLHGHLKEDVYMVQ 1275
Query: 511 PQGFIDPLKPHYVCKLLKSIYGLKQAPRAWYEELFQALLALGFTTSEADHSLFIKKGQKS 332
P GF+DP KPH+VCKL KS+YGLKQAPRAWYE + A+L+LGF++S +D SLFIK+ S
Sbjct: 1276 PPGFVDPSKPHHVCKLRKSLYGLKQAPRAWYEAFYTAILSLGFSSSHSDTSLFIKR-DTS 1334
Query: 331 ITYILVYVDDILITGSSKVEYLQVIS*LSSTFAMKDLGLLHYFLGLEAQRDSRGIFLCQT 152
IT+ILVYVDDI+ITGSS E +IS L + F +KDLG ++YFLG+E + +G+ L Q
Sbjct: 1335 ITFILVYVDDIIITGSSVTECQSIISQLQTMFPVKDLGDINYFLGIEVHKSDQGLLLHQA 1394
Query: 151 KYTYDLLQKANMIDAKPASTPISSSCKLDSHSGELLA*PT*PTSYRSLV 5
KY DLL+K +M+ AKP +TP+S+S KLD HSG LL + PTSYRS V
Sbjct: 1395 KYALDLLKKTDMLGAKPCATPVSTS-KLD-HSGTLL---SDPTSYRSTV 1438
>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1621
Score = 245 bits (626), Expect = 5e-63
Identities = 127/229 (55%), Positives = 159/229 (69%)
Frame = -2
Query: 691 KGFNQQYGFDYLETFSPVVKPTTIRLILSIAVNFN*EIRQLDVSNAFLHGHLKEQVFMKQ 512
KGF Q+YG DY +TFSPVVK TIR+ILS+AV+ +RQLDV NAFLHG+L+E+V+M Q
Sbjct: 734 KGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQ 793
Query: 511 PQGFIDPLKPHYVCKLLKSIYGLKQAPRAWYEELFQALLALGFTTSEADHSLFIKKGQKS 332
P GF DP KPH+VCKL K++YGLKQAPRAW+ L + L+ LGF S+AD SLF
Sbjct: 794 PPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDI 853
Query: 331 ITYILVYVDDILITGSSKVEYLQVIS*LSSTFAMKDLGLLHYFLGLEAQRDSRGIFLCQT 152
++LVYVDDI++ SS+ ++ L FA+KDLG LHYFLG+E + GI L Q
Sbjct: 854 TMFVLVYVDDIIVASSSEKATAALLQNLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQD 913
Query: 151 KYTYDLLQKANMIDAKPASTPISSSCKLDSHSGELLA*PT*PTSYRSLV 5
KY DLL+K MID KPA+TP+S S KL H G LL P + YRS+V
Sbjct: 914 KYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLG-PEDASHYRSVV 961
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 245 bits (625), Expect = 7e-63
Identities = 127/229 (55%), Positives = 159/229 (69%)
Frame = -2
Query: 691 KGFNQQYGFDYLETFSPVVKPTTIRLILSIAVNFN*EIRQLDVSNAFLHGHLKEQVFMKQ 512
KGF Q+YG DY +TFSPVVK TIR+ILS+AV+ +RQLDV NAFLHG+L+E+V+M Q
Sbjct: 1005 KGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQ 1064
Query: 511 PQGFIDPLKPHYVCKLLKSIYGLKQAPRAWYEELFQALLALGFTTSEADHSLFIKKGQKS 332
P GF DP KPH+VCKL K++YGLKQAPRAW+ L + L+ LGF S+AD SLF
Sbjct: 1065 PPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDI 1124
Query: 331 ITYILVYVDDILITGSSKVEYLQVIS*LSSTFAMKDLGLLHYFLGLEAQRDSRGIFLCQT 152
++LVYVDDI++ SS+ ++ L FA+KDLG LHYFLG+E + GI L Q
Sbjct: 1125 TMFVLVYVDDIIVASSSERATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQD 1184
Query: 151 KYTYDLLQKANMIDAKPASTPISSSCKLDSHSGELLA*PT*PTSYRSLV 5
KY DLL+K MID KPA+TP+S S KL H G LL P + YRS+V
Sbjct: 1185 KYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLG-PEDASHYRSVV 1232
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 244 bits (624), Expect = 9e-63
Identities = 129/229 (56%), Positives = 158/229 (68%)
Frame = -2
Query: 691 KGFNQQYGFDYLETFSPVVKPTTIRLILSIAVNFN*EIRQLDVSNAFLHGHLKEQVFMKQ 512
KGF QQYG DY +TFSPVVK +TIRL+LS+AV+ +RQLDV NAFLHG L+E V+MKQ
Sbjct: 992 KGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQ 1051
Query: 511 PQGFIDPLKPHYVCKLLKSIYGLKQAPRAWYEELFQALLALGFTTSEADHSLFIKKGQKS 332
P GF D P+Y C L KS+YGLKQ PRAWY L + L +LGF S+AD SLFI +
Sbjct: 1052 PPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHST 1111
Query: 331 ITYILVYVDDILITGSSKVEYLQVIS*LSSTFAMKDLGLLHYFLGLEAQRDSRGIFLCQT 152
YILVYVDDI+ITGSS V++ L FA+KDLG LHYFLG+E R G+ LCQ
Sbjct: 1112 AIYILVYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQE 1171
Query: 151 KYTYDLLQKANMIDAKPASTPISSSCKLDSHSGELLA*PT*PTSYRSLV 5
KY DLL++ M KP TP+++S KL + +G LL+ P T YRS+V
Sbjct: 1172 KYARDLLKRVGMECCKPVHTPVATSEKLSASAGTLLS-PEETTKYRSVV 1219
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 244 bits (622), Expect = 2e-62
Identities = 116/214 (54%), Positives = 161/214 (75%)
Frame = -2
Query: 691 KGFNQQYGFDYLETFSPVVKPTTIRLILSIAVNFN*EIRQLDVSNAFLHGHLKEQVFMKQ 512
KGF+QQ GFD+ ETFSPVVKP+T+R++ +IA++ N I+QLDV+NAFL+G L+E+VFM+Q
Sbjct: 1004 KGFHQQAGFDFTETFSPVVKPSTVRVVFTIALSRNWAIKQLDVNNAFLNGDLQEEVFMQQ 1063
Query: 511 PQGFIDPLKPHYVCKLLKSIYGLKQAPRAWYEELFQALLALGFTTSEADHSLFIKKGQKS 332
PQGFID P+ VC+L K++YGLKQAPRAW+E+L +ALL+ GF ++++D SLF++
Sbjct: 1064 PQGFIDEQNPNLVCRLHKALYGLKQAPRAWFEKLHRALLSFGFVSAKSDQSLFLRFTPNH 1123
Query: 331 ITYILVYVDDILITGSSKVEYLQVIS*LSSTFAMKDLGLLHYFLGLEAQRDSRGIFLCQT 152
ITY+LVYVDDIL+ GS +I+ L+S F++KDLG +HYFLG++ + G+ L QT
Sbjct: 1124 ITYVLVYVDDILVIGSDTAAITSLIAQLNSEFSLKDLGEVHYFLGIQVSHTNNGLHLSQT 1183
Query: 151 KYTYDLLQKANMIDAKPASTPISSSCKLDSHSGE 50
KY DLLQK M+ KPA TP+ + KL G+
Sbjct: 1184 KYIRDLLQKTKMVHCKPARTPLPTGLKLRVGDGD 1217