BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020104
         (1343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis ...    84   5e-28
emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]    90   7e-25
ref|XP_003629214.1| F-box protein [Medicago truncatula] gi|35552...    74   5e-21
ref|XP_003599188.1| F-box protein [Medicago truncatula] gi|35548...    68   1e-20
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...    62   9e-17

>ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 405

 Score = 84.3 bits (207), Expect(2) = 5e-28
 Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
 Frame = +2

Query: 809  KFGYFKCGYVTWTDFVIKDHEASFDDLIHYKGQFIAVDSTGQTFVLDPYTLSSTTLANRV 988
            +   ++ G   W+       ++ FDD+I+YKG+F A+D  G+  V+D  +L +T LA+ V
Sbjct: 197  RLALWRLGEEKWSLIDDGAEKSHFDDVIYYKGRFYAIDYKGRIVVIDADSLKATELASPV 256

Query: 989  VKRYEEEQMKQFRETNCVPIIYVDSRRHLIISNKQLFLVDIYVEEHGPNWPCDSHGQCM- 1165
                        R T+          +H + S  +LFLVD Y+++    + C+ +   + 
Sbjct: 257  ---------HGSRGTH----------KHFVESFGELFLVDKYLDDELQIF-CNDYSDIVA 296

Query: 1166 -----PIDCKVFVLDEEQQQWVPVESLGDRVFLLSPQGSYSISALDFPGCKGNRIFFT 1324
                 P+  +VF   EE+Q+W  V  +GDRV  +    ++S+S+ DFPG KGN ++FT
Sbjct: 297  DVPDYPVHFEVFKFIEEEQKWDWVSDIGDRVLFVGDDRTFSLSSTDFPGFKGNCVYFT 354



 Score = 67.8 bits (164), Expect(2) = 5e-28
 Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 11/196 (5%)
 Frame = +3

Query: 255 WLHLPDELLNAISKHIDTKFETIQFRSVCQSWRSXXXXXXXXXXXXXXXXI--------- 407
           W HLP +LL  I+  +DT+ + + FR VC SW S                +         
Sbjct: 8   WSHLPKDLLAKIAGRLDTRIDFLHFRGVCSSWMSSVSPTFPRKNPILSLKLPYPIASNAN 67

Query: 408 --LDDHDITHTRLGSCKLVETTIYTLRPKEQLQTQPESGSSWLIKVEEESPNVVHLIDPL 581
             + D D T    GS  L+E+T+Y L+P   L+  P+S  + L+K+EE  P    L+D L
Sbjct: 68  LNICDPD-TRNPHGSFSLIESTLYYLQP---LRQTPDSKEALLVKLEEPKPGKGRLMDTL 123

Query: 582 LRWYEYAPPEPFSEVLNLSDFQIYGLCKETDDASRFSPKRGIYYWSSNVDVNVRKVILTS 761
            R      P+ F +VLN  +F++  + K      RF   RG    S      + K ++  
Sbjct: 124 SRCAIQHLPKNFPKVLNTLNFRVREVGKAY--GLRFFDVRGKPITSFEFKSILIKKVIMF 181

Query: 762 STASNSNFVVVALRWR 809
           S       +++ +R R
Sbjct: 182 SKGDEYGLMMIHIRGR 197


>emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]
          Length = 986

 Score = 72.0 bits (175), Expect(2) = 7e-25
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 1/173 (0%)
 Frame = +2

Query: 809  KFGYFKCGYVTWTDFVIKDHEASFDDLIHYKGQFIAVDSTGQTFVLDPYTLSSTTLANRV 988
            +   ++ G   W+       ++ FDD+I+YKG+F A+D  G+  V+D  +L +T LA+ V
Sbjct: 197  RLALWRLGEEKWSLIDDGAEKSHFDDVIYYKGRFYAIDYKGRIVVIDADSLKATELASPV 256

Query: 989  VKRYEEEQMKQFRETNCVPIIYVDSRRHLIISNKQLFLV-DIYVEEHGPNWPCDSHGQCM 1165
                        R T+          +H + S  +L +V D+      P++         
Sbjct: 257  ---------HGSRGTH----------KHFVESFGELDIVADV------PDY--------- 282

Query: 1166 PIDCKVFVLDEEQQQWVPVESLGDRVFLLSPQGSYSISALDFPGCKGNRIFFT 1324
            P+  +VF   EE+Q+W  V  +GDRV  +    ++S+S+ DFPG KGN ++FT
Sbjct: 283  PVHFEVFKFIEEEQKWDWVSDIGDRVLFVGDDRTFSLSSTDFPGFKGNCVYFT 335



 Score = 69.7 bits (169), Expect(2) = 7e-25
 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 11/196 (5%)
 Frame = +3

Query: 255 WLHLPDELLNAISKHIDTKFETIQFRSVCQSWRSXXXXXXXXXXXXXXXXI--------- 407
           W HLP +LL  I+  +DT+ + + FR VC SW S                +         
Sbjct: 8   WSHLPKDLLAKIAGRLDTRIDFLHFRGVCSSWMSSVSPTFPSKNPLLSLKLPYPIASNAN 67

Query: 408 --LDDHDITHTRLGSCKLVETTIYTLRPKEQLQTQPESGSSWLIKVEEESPNVVHLIDPL 581
             + D D  + R GS  L+E+T+Y L+P   L+  P+S  + L+K+EE  P    L+D L
Sbjct: 68  LNIXDPDTRNPR-GSFSLIESTLYYLQP---LRQTPDSKEALLVKLEEPKPGKGRLMDTL 123

Query: 582 LRWYEYAPPEPFSEVLNLSDFQIYGLCKETDDASRFSPKRGIYYWSSNVDVNVRKVILTS 761
            R      P+ F +VLN  +F++  + K      RF   RG    S      + K ++  
Sbjct: 124 SRCAIQHLPKNFPKVLNTLNFRVREVGKAY--GLRFFDVRGKPITSFEFKSILIKKVIMF 181

Query: 762 STASNSNFVVVALRWR 809
           S       +++ +R R
Sbjct: 182 SKGDEYGLMMIHIRGR 197



 Score = 90.1 bits (222), Expect = 1e-15
 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 6/178 (3%)
 Frame = +2

Query: 821  FKCGYVTWTDFVIKDHEASFDDLIHYKGQFIAVDSTGQTFVLDPYTLSSTTLANRVVKRY 1000
            ++ G   W+       ++ FDD+I+YKG+F A+D  G+  V+D  +L +T LA+ V    
Sbjct: 591  WRLGEKKWSLIDDGAEKSHFDDVIYYKGRFYAIDYXGRIVVIDADSLKATELASPVHGSR 650

Query: 1001 EEEQMKQFRETNCVPIIYVDSRRHLIISNKQLFLVDIYVEEHGPNWPCDSHGQCM----- 1165
                                + RH + S  +LFLVD YV        C+++   +     
Sbjct: 651  -------------------GNHRHFVESFGELFLVDKYVVTF-----CNNYSDIVSVVPD 686

Query: 1166 -PIDCKVFVLDEEQQQWVPVESLGDRVFLLSPQGSYSISALDFPGCKGNRIFFTDYEF 1336
             P+  +VF   EE+Q+W  V  +GDRV  +    ++S+S+ DFPG KGN ++FT+Y F
Sbjct: 687  YPVHXEVFKFIEEEQKWDWVSGIGDRVLFVDDDRTFSLSSTDFPGFKGNCVYFTEYXF 744



 Score = 69.3 bits (168), Expect = 2e-09
 Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
 Frame = +3

Query: 255 WLHLPDELLNAISKHIDTKFETIQFRSVCQSWRSXXXXXXXXXXXXXXXXI--------- 407
           W HLP +LL  I+  +DT  + ++FR VC SW S                I         
Sbjct: 398 WSHLPKDLLAKIAGRLDTXIDFLRFRGVCSSWMSSVSPTFPSKNPLLSLKIPYPIDSIAN 457

Query: 408 --LDDHDITHTRLGSCKLVETTIYTLRPKEQLQTQPESGSSWLIKVEEESPNVVHLIDPL 581
             + D D  + R+ S  L+E+T+Y L+P   L+  P+S  + L+K+ E  P  V L+D L
Sbjct: 458 LNISDPDTPNPRV-SFSLIESTLYYLQP---LRQTPDSKEALLVKLXEPKPGKVRLMDTL 513

Query: 582 LRWYEYAPPEPFSEVLNLSDFQI 650
            R      P+ F +VLN  DF++
Sbjct: 514 SRRAIKHLPKNFPKVLNTLDFRV 536


>ref|XP_003629214.1| F-box protein [Medicago truncatula] gi|355523236|gb|AET03690.1| F-box
            protein [Medicago truncatula]
          Length = 377

 Score = 73.9 bits (180), Expect(2) = 5e-21
 Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 5/178 (2%)
 Frame = +2

Query: 809  KFGYFKCGYVTWTDFVIKDHEASFDDLIHYKGQFIAVDSTGQTFVLDPYTLSSTTLANRV 988
            K G+ K G   W   ++ ++   +DD+I +KG F   D  G    +D  +L         
Sbjct: 188  KLGFMKYGDTKWK--LVDENNFFYDDVIVFKGLFYVTDRWGTISWIDISSL--------- 236

Query: 989  VKRYEEEQMKQFRETNCVPIIYVDSRRHLIISNKQLFLVDIYVEEHGPNWPCDS----HG 1156
                   ++ QF      P+    +++HL+ S   L++VD Y E  G N   ++    H 
Sbjct: 237  -------RLIQFAP----PLCGFGNKKHLVESCGNLYVVDRYYE--GENMRSNNVGRHHD 283

Query: 1157 QCMPIDC-KVFVLDEEQQQWVPVESLGDRVFLLSPQGSYSISALDFPGCKGNRIFFTD 1327
            Q   ++C KV +LDEE  +WV V++L DR F+LS   ++S+SA +  G +GN I+F D
Sbjct: 284  QDAVVECFKVHMLDEEWGKWVDVKNLRDRAFVLSRSCNFSVSAKELIGYQGNCIYFKD 341



 Score = 54.7 bits (130), Expect(2) = 5e-21
 Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 14/176 (7%)
 Frame = +3

Query: 255 WLHLPDELLNAISKHIDTKFETIQFRSVCQSWRSXXXXXXXXXXXXXXXXILDDHDITHT 434
           W HLP EL + I K++D   + ++FRSVC+S+RS                      I HT
Sbjct: 7   WSHLPKELWSKIGKYLDNHIDILRFRSVCESFRSSIPPSHPNSPSFPL-------QIPHT 59

Query: 435 RLGSC-KLVETTIYTLRPKEQLQT------QPESGSSWLIKVEEESPN-VVHLIDPLLRW 590
              S   L ++TIY + P             P     WLIKVEE + N +  L+ P+   
Sbjct: 60  IFDSLYYLHQSTIYLIEPTNGSSNFNLPPLAPSYTKGWLIKVEESNNNPLKSLLSPISDC 119

Query: 591 YEYAPPEPFSE---VLNLSDFQIYGLCKE-TDDASRFSPK--RGIYYWSSNVDVNV 740
               P +  +    + NL ++++  LCK  T   + +SP     + ++ ++  +NV
Sbjct: 120 KLSYPLDSNNSSPIIWNLLNYRVIELCKSYTFQKTLYSPSYVSKVVFYPNSPRINV 175


>ref|XP_003599188.1| F-box protein [Medicago truncatula] gi|355488236|gb|AES69439.1| F-box
            protein [Medicago truncatula]
          Length = 969

 Score = 67.8 bits (164), Expect(2) = 1e-20
 Identities = 56/175 (32%), Positives = 76/175 (43%), Gaps = 4/175 (2%)
 Frame = +2

Query: 815  GYFKCGYVTWTDFVIKDHEASFDDLIHYKGQFIAVDSTGQTFVLDPYTLSSTTLANRVVK 994
            G FKCG  TW   VI D    F D+  +KG+  AVD  G TF++ P   +   +A     
Sbjct: 187  GLFKCGDKTWK--VIPDMSIKFGDICFFKGRPYAVDKIGGTFMIGPDDSNVHLVAE---- 240

Query: 995  RYEEEQMKQFRETNCVPIIYVDSRRHLIISNKQLFLVDIY----VEEHGPNWPCDSHGQC 1162
                            P+I     + L+     L LVDIY     E  GP+         
Sbjct: 241  ----------------PLIDGGDIKFLVDREGDLLLVDIYECFCFEFPGPD--------- 275

Query: 1163 MPIDCKVFVLDEEQQQWVPVESLGDRVFLLSPQGSYSISALDFPGCKGNRIFFTD 1327
              I   VF L E++++WV + +LGD V  L    S+S SA D    +GN + FTD
Sbjct: 276  -AIRVDVFKLYEKEKKWVKLTTLGDSVLFLGNDCSFSASASDLCLPRGNCVVFTD 329



 Score = 59.3 bits (142), Expect(2) = 1e-20
 Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 8/166 (4%)
 Frame = +3

Query: 255 WLHLPDELLNAISKHIDTKFETIQFRSVCQSW------RSXXXXXXXXXXXXXXXXILDD 416
           W  LP ELLN IS+ +D + + I+FRSVC  W                        I+D 
Sbjct: 6   WSQLPKELLNLISQRLDNELDLIRFRSVCSIWCTSIPNHHNILPFKFPLLKFSYTYIIDI 65

Query: 417 HDITH-TRLGSCKLVETTIYTLRPKEQLQTQPESGSSWLIKVEEESPNVVHLIDPLLRWY 593
             I +      C L +  I+ ++PK+Q Q Q  +   WLI++ + S     L  PL R  
Sbjct: 66  DSINNKDNTSFCHLSKNNIFLIKPKQQQQYQ--TLGPWLIRIVQSSIGKTQLHHPLSR-- 121

Query: 594 EYAPPEPFSEVLNLSDFQIYGL-CKETDDASRFSPKRGIYYWSSNV 728
               P  F  VL+ + F +  L C  T D +   P    + +   V
Sbjct: 122 ---DPFHFPHVLDFNQFSLLHLGCMFTADDNFLEPSPFCFMYPEKV 164


>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score = 62.0 bits (149), Expect(2) = 9e-17
 Identities = 46/163 (28%), Positives = 80/163 (49%)
 Frame = +2

Query: 839  TWTDFVIKDHEASFDDLIHYKGQFIAVDSTGQTFVLDPYTLSSTTLANRVVKRYEEEQMK 1018
            +WT   ++D ++  +D+I ++G F AV+  G   V D   +S ++    +++        
Sbjct: 198  SWT--FLEDAQSYAEDVIFHRGLFYAVNKYGSIAVCD---VSGSSPRVSIIE-------- 244

Query: 1019 QFRETNCVPIIYVDSRRHLIISNKQLFLVDIYVEEHGPNWPCDSHGQCMPIDCKVFVLDE 1198
                   +P  +    ++L+ S ++L LV  Y++      P  +         +V  LD 
Sbjct: 245  -------MPQQFGGDLQYLVESGEELLLVTRYLDLTYDVEPDQTSLIYRTTRFQVCRLDL 297

Query: 1199 EQQQWVPVESLGDRVFLLSPQGSYSISALDFPGCKGNRIFFTD 1327
            +  +W  V SLGDR   L    S S+S++DFPGCKGN I++TD
Sbjct: 298  KAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTD 340



 Score = 52.4 bits (124), Expect(2) = 9e-17
 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 6/188 (3%)
 Frame = +3

Query: 255 WLHLPDELLNAISKHIDTKFETIQFRSVCQSWRSXXXXXXXXXXXXXXXXILDDHDITHT 434
           W  L  ELL+ I+K      + ++FR+VC +WR+                +L      HT
Sbjct: 4   WSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRASVPKTPHHLPTQLPWLMLPQSQPHHT 63

Query: 435 RLGSCKLVETTIYTLRPKEQLQTQPESGSS--WLIKVEEESPNVVHLIDPLLRWYEYAPP 608
                 L     + L+  E    +   GSS  WL+ + +E+P  + L++PL R   + PP
Sbjct: 64  HRPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLL-ILDEAPE-IFLLNPLTRSKVHLPP 121

Query: 609 -EPFSEVL--NLSDF-QIYGLCKETDDASRFSPKRGIYYWSSNVDVNVRKVILTSSTASN 776
              F  V+  N +D  + Y L   + D    S K+         D  ++K IL+SS A+ 
Sbjct: 122 LSTFPNVVRFNFADVGREYALRTSSGDVYTRSLKK-------MRDSFIKKTILSSSPANG 174

Query: 777 SNFVVVAL 800
           S+F+ V +
Sbjct: 175 SDFIAVVI 182