BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020068
         (661 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI25349.3| unnamed protein product [Vitis vinifera]               86   6e-30
ref|XP_002319343.1| predicted protein [Populus trichocarpa] gi|2...    81   4e-27
ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containi...    71   1e-21
ref|XP_002520874.1| pentatricopeptide repeat-containing protein,...    64   8e-20
ref|NP_181604.1| pentatricopeptide repeat-containing protein [Ar...    64   1e-18

>emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score = 85.9 bits (211), Expect(2) = 6e-30
 Identities = 39/71 (54%), Positives = 53/71 (74%), Gaps = 3/71 (4%)
 Frame = -3

Query: 371 VFVKVSKSEVCVQDIPLWNSIVDGYFKFGCFEDGIVQFCRMMGLGIKPDAYSLCIVLGVC 192
           VF K+S+S     DI +WN ++DGYFK+G FE+G+ QFCRM  LGI+PD YSL IVLG+C
Sbjct: 498 VFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGIC 557

Query: 191 ---SEFVAGKR 168
              S ++AG++
Sbjct: 558 NRLSWYMAGRQ 568



 Score = 70.9 bits (172), Expect(2) = 6e-30
 Identities = 35/61 (57%), Positives = 44/61 (72%), Gaps = 6/61 (9%)
 Frame = -1

Query: 166 HRYIVRNVFMWDAFLESALIDMY------MYAWRVFDKLEDKSSIVVRNVMIGGFCEDGM 5
           H YI+RN+F  D +LE+ALI MY      M AW +F KLE++S+IV  NVMIGGF E+GM
Sbjct: 570 HGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGM 629

Query: 4   W 2
           W
Sbjct: 630 W 630


>ref|XP_002319343.1| predicted protein [Populus trichocarpa] gi|222857719|gb|EEE95266.1|
           predicted protein [Populus trichocarpa]
          Length = 848

 Score = 80.9 bits (198), Expect(2) = 4e-27
 Identities = 36/58 (62%), Positives = 46/58 (79%)
 Frame = -3

Query: 371 VFVKVSKSEVCVQDIPLWNSIVDGYFKFGCFEDGIVQFCRMMGLGIKPDAYSLCIVLG 198
           VF K+ +SEV  QD+  WNSIV+GYF+FG  ++GI QFCRM   G++PDAYSLCI+LG
Sbjct: 107 VFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLG 164



 Score = 66.6 bits (161), Expect(2) = 4e-27
 Identities = 34/61 (55%), Positives = 41/61 (67%), Gaps = 6/61 (9%)
 Frame = -1

Query: 166 HRYIVRNVFMWDAFLESALIDMY------MYAWRVFDKLEDKSSIVVRNVMIGGFCEDGM 5
           H Y VR VF  D FLES LI MY      + AWR+F +LEDK ++V  NVMIGGF E+G+
Sbjct: 177 HGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGL 236

Query: 4   W 2
           W
Sbjct: 237 W 237


>ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score = 70.9 bits (172), Expect(2) = 1e-21
 Identities = 35/61 (57%), Positives = 44/61 (72%), Gaps = 6/61 (9%)
 Frame = -1

Query: 166 HRYIVRNVFMWDAFLESALIDMY------MYAWRVFDKLEDKSSIVVRNVMIGGFCEDGM 5
           H YI+RN+F  D +LE+ALI MY      M AW +F KLE++S+IV  NVMIGGF E+GM
Sbjct: 165 HGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGM 224

Query: 4   W 2
           W
Sbjct: 225 W 225



 Score = 57.8 bits (138), Expect(2) = 1e-21
 Identities = 24/44 (54%), Positives = 32/44 (72%)
 Frame = -3

Query: 371 VFVKVSKSEVCVQDIPLWNSIVDGYFKFGCFEDGIVQFCRMMGL 240
           VF K+S+S     DI +WN ++DGYFK+G FE+G+ QFCRM  L
Sbjct: 112 VFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQEL 155


>ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540005|gb|EEF41583.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 833

 Score = 64.3 bits (155), Expect(2) = 8e-20
 Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 6/61 (9%)
 Frame = -1

Query: 166 HRYIVRNVFMWDAFLESALIDMYMYAWR------VFDKLEDKSSIVVRNVMIGGFCEDGM 5
           H YIVRN+  +D FLE+ALID Y    R      +F KL+D+S+IV  NVMIGGF E+G+
Sbjct: 162 HSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGL 221

Query: 4   W 2
           W
Sbjct: 222 W 222



 Score = 58.5 bits (140), Expect(2) = 8e-20
 Identities = 26/47 (55%), Positives = 34/47 (72%)
 Frame = -3

Query: 371 VFVKVSKSEVCVQDIPLWNSIVDGYFKFGCFEDGIVQFCRMMGLGIK 231
           VF ++ KS V V D+ +WNSI+DGYF+FG  E+G+VQF RM   G K
Sbjct: 110 VFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYK 156


>ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g40720 gi|330254774|gb|AEC09868.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score = 63.9 bits (154), Expect(2) = 1e-18
 Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
 Frame = -3

Query: 443 YLQFQFLDKWGMHALFCYGVTLYNVFVKVSKSEVCVQDIPLWNSIVDGYFKFGCFEDGIV 264
           Y++  FLD         Y V +++ + + S+S V  +D+ +WNS++DGYFKF  F++G+ 
Sbjct: 105 YVKCGFLD---------YAVQVFDGWSQ-SQSGVSARDVTVWNSMIDGYFKFRRFKEGVG 154

Query: 263 QFCRMMGLGIKPDAYSLCIVLGV-CSE 186
            F RM+  G++PDA+SL IV+ V C E
Sbjct: 155 CFRRMLVFGVRPDAFSLSIVVSVMCKE 181



 Score = 55.1 bits (131), Expect(2) = 1e-18
 Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 6/60 (10%)
 Frame = -1

Query: 166 HRYIVRNVFMWDAFLESALIDMYMY------AWRVFDKLEDKSSIVVRNVMIGGFCEDGM 5
           H +++RN    D+FL++ALIDMY        AWRVF ++EDKS++V+ NVMI GF   G+
Sbjct: 193 HGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGI 252