BLASTX nr result

ID: Coptis24_contig00020051 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020051
         (203 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510953.1| conserved hypothetical protein [Ricinus comm...    99   4e-19
ref|XP_002267657.1| PREDICTED: conserved oligomeric Golgi comple...    97   2e-18
ref|XP_002304412.1| predicted protein [Populus trichocarpa] gi|2...    96   3e-18
ref|XP_002438832.1| hypothetical protein SORBIDRAFT_10g026850 [S...    95   7e-18
dbj|BAD45448.1| oligomeric golgi complex 7-like [Oryza sativa Ja...    93   3e-17

>ref|XP_002510953.1| conserved hypothetical protein [Ricinus communis]
           gi|223550068|gb|EEF51555.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 832

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 46/55 (83%), Positives = 51/55 (92%)
 Frame = +2

Query: 2   LSALSMPIPPVLATFHTCFSTPRDQLRDLVKSDAGNQLDIPTAQLACRIRRVTLD 166
           LSALSMPIPP+LATFHTC STPRDQL+ LVKSDAGNQLD+PTA L C+IRRV+LD
Sbjct: 778 LSALSMPIPPILATFHTCLSTPRDQLKYLVKSDAGNQLDLPTANLVCKIRRVSLD 832


>ref|XP_002267657.1| PREDICTED: conserved oligomeric Golgi complex subunit 7 [Vitis
           vinifera] gi|296084209|emb|CBI24597.3| unnamed protein
           product [Vitis vinifera]
          Length = 838

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 44/55 (80%), Positives = 50/55 (90%)
 Frame = +2

Query: 2   LSALSMPIPPVLATFHTCFSTPRDQLRDLVKSDAGNQLDIPTAQLACRIRRVTLD 166
           LSALSMPIPP+LATFH+C STPRDQL+D VKSDAGNQLD+PTA L C+IRRV L+
Sbjct: 784 LSALSMPIPPILATFHSCLSTPRDQLKDFVKSDAGNQLDLPTANLVCKIRRVGLE 838


>ref|XP_002304412.1| predicted protein [Populus trichocarpa] gi|222841844|gb|EEE79391.1|
           predicted protein [Populus trichocarpa]
          Length = 788

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 44/55 (80%), Positives = 50/55 (90%)
 Frame = +2

Query: 2   LSALSMPIPPVLATFHTCFSTPRDQLRDLVKSDAGNQLDIPTAQLACRIRRVTLD 166
           LSALSMPIPP+LATFHTC STPRDQL+ LVKSD+GNQLD+ TA L C+IRRV+LD
Sbjct: 734 LSALSMPIPPILATFHTCLSTPRDQLKQLVKSDSGNQLDLSTANLVCKIRRVSLD 788


>ref|XP_002438832.1| hypothetical protein SORBIDRAFT_10g026850 [Sorghum bicolor]
           gi|241917055|gb|EER90199.1| hypothetical protein
           SORBIDRAFT_10g026850 [Sorghum bicolor]
          Length = 820

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 42/55 (76%), Positives = 49/55 (89%)
 Frame = +2

Query: 2   LSALSMPIPPVLATFHTCFSTPRDQLRDLVKSDAGNQLDIPTAQLACRIRRVTLD 166
           LSALSMPIPP L+TFH C STPRDQ+RDL+KSD G+QLD+PTA L C+IRR+TLD
Sbjct: 766 LSALSMPIPPFLSTFHACVSTPRDQVRDLIKSDGGSQLDLPTAHLVCKIRRITLD 820


>dbj|BAD45448.1| oligomeric golgi complex 7-like [Oryza sativa Japonica Group]
          Length = 873

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 41/53 (77%), Positives = 48/53 (90%)
 Frame = +2

Query: 2   LSALSMPIPPVLATFHTCFSTPRDQLRDLVKSDAGNQLDIPTAQLACRIRRVT 160
           LSALSMPIPP LATFHTC STPRDQ+RDL+KSD G+QLD+PTA L C+IRR++
Sbjct: 818 LSALSMPIPPFLATFHTCISTPRDQVRDLIKSDGGSQLDLPTAHLVCKIRRIS 870


Top