BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019994
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              184   7e-45
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   184   7e-45
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   176   2e-42
ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocar...   176   2e-42
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...   175   4e-42

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  184 bits (467), Expect = 7e-45
 Identities = 89/106 (83%), Positives = 94/106 (88%)
 Frame = -2

Query: 320 KRVNEIGLPLEIAQRITFEEKVTEQNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTI 141
           KRVNEIGLP EIAQRITFEE+V   N  HLQ LVD+KLCLTY DG S YSLREGSKGHT 
Sbjct: 394 KRVNEIGLPFEIAQRITFEERVNVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTF 453

Query: 140 LRVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKIN 3
           LR GQVVHRRIMDGD+VFINRPP+THKHSLQALSVYVH+DHTVKIN
Sbjct: 454 LRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKIN 499


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  184 bits (467), Expect = 7e-45
 Identities = 89/106 (83%), Positives = 94/106 (88%)
 Frame = -2

Query: 320 KRVNEIGLPLEIAQRITFEEKVTEQNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTI 141
           KRVNEIGLP EIAQRITFEE+V   N  HLQ LVD+KLCLTY DG S YSLREGSKGHT 
Sbjct: 334 KRVNEIGLPFEIAQRITFEERVNVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTF 393

Query: 140 LRVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKIN 3
           LR GQVVHRRIMDGD+VFINRPP+THKHSLQALSVYVH+DHTVKIN
Sbjct: 394 LRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKIN 439


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score =  176 bits (446), Expect = 2e-42
 Identities = 84/106 (79%), Positives = 94/106 (88%)
 Frame = -2

Query: 320 KRVNEIGLPLEIAQRITFEEKVTEQNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTI 141
           K VNEIG+P EIAQRITFEE+V   N  +LQ+LVD KLCLTY DG+S YSLREGSKGHT 
Sbjct: 336 KCVNEIGIPSEIAQRITFEERVNAHNMQYLQELVDNKLCLTYRDGSSTYSLREGSKGHTF 395

Query: 140 LRVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKIN 3
           LR+GQ+VHRRIMDGD+VFINRPP+THKHSLQALSVYVH+ HTVKIN
Sbjct: 396 LRLGQIVHRRIMDGDMVFINRPPTTHKHSLQALSVYVHDGHTVKIN 441


>ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222846466|gb|EEE84013.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 842

 Score =  176 bits (446), Expect = 2e-42
 Identities = 83/105 (79%), Positives = 95/105 (90%)
 Frame = -2

Query: 317 RVNEIGLPLEIAQRITFEEKVTEQNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTIL 138
           +VN++G+P EIAQRITFEE+V+  N  +LQ+LVD KLCLTY DG+S YSLREGSKGHT L
Sbjct: 255 KVNQVGIPYEIAQRITFEERVSVHNMRYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFL 314

Query: 137 RVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKIN 3
           R GQVVHRRI+DGDVVFINRPP+THKHSLQALSVYVH+DHTVKIN
Sbjct: 315 RPGQVVHRRIIDGDVVFINRPPTTHKHSLQALSVYVHDDHTVKIN 359


>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 924

 Score =  175 bits (443), Expect = 4e-42
 Identities = 82/104 (78%), Positives = 93/104 (89%)
 Frame = -2

Query: 314 VNEIGLPLEIAQRITFEEKVTEQNKVHLQQLVDKKLCLTYSDGASMYSLREGSKGHTILR 135
           VN++G+P EIAQRITFEE+V+  N  +LQ+LVD KLCLTY DG+S YSLREGSKGHT LR
Sbjct: 338 VNQVGIPYEIAQRITFEERVSVHNMRYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLR 397

Query: 134 VGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKIN 3
            GQVVHRRIMDGD+VFINRPP+THKHSLQALSVYVH+DH VKIN
Sbjct: 398 PGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHAVKIN 441