BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019992
         (311 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. ...    65   4e-09
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers...    64   1e-08
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    63   3e-08
gb|EEC68446.1| hypothetical protein OsI_36656 [Oryza sativa Indi...    62   4e-08
gb|ABA94593.2| retrotransposon protein, putative, unclassified [...    62   4e-08

>gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. pekinensis]
          Length = 1555

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 28/66 (42%), Positives = 41/66 (62%)
 Frame = +1

Query: 22   NYIWHLDTTQRVKLFLWKAVKNALPTKENLSYQNIV*SSTCSRCNNQVESTSHALFHCIM 201
            N++W LD   +VKLF+WK +K A+P  E L  ++I     C RC +  ES +H LFHC  
Sbjct: 1249 NHVWKLDCAPKVKLFVWKVLKGAVPVGERLLERHIDIDPRCKRCGSN-ESITHLLFHCQF 1307

Query: 202  LKRIWY 219
             +R+W+
Sbjct: 1308 AQRVWH 1313


>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 29/93 (31%), Positives = 50/93 (53%)
 Frame = +1

Query: 28   IWHLDTTQRVKLFLWKAVKNALPTKENLSYQNIV*SSTCSRCNNQVESTSHALFHCIMLK 207
            +W L T  ++K+FLWK +  A+P  + LSY+ +   S C  C  + ES  H LF C   +
Sbjct: 894  VWKLQTEPKIKVFLWKVLSGAIPVVDLLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPR 953

Query: 208  RIWYDSSLGLRVENWNPSDNLSSVLSSLINRHN 306
            ++W  S++ + +  +      +++   LINR N
Sbjct: 954  QVWAMSNIHVPLLGFECGSVYANLYHFLINRDN 986


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 36/89 (40%), Positives = 50/89 (56%)
 Frame = +1

Query: 28   IWHLDTTQRVKLFLWKAVKNALPTKENLSYQNIV*SSTCSRCNNQVESTSHALFHCIMLK 207
            IW + T+ +VK FLWKA+K ALP  E LS +NI    TC RC  Q ES+ H +  C   K
Sbjct: 974  IWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRC-GQTESSLHLMLLCPYAK 1032

Query: 208  RIWYDSSLGLRVENWNPSDNLSSVLSSLI 294
            ++W      L    +NPS+   S ++ L+
Sbjct: 1033 KVW-----ELAPVLFNPSEATHSSVALLL 1056


>gb|EEC68446.1| hypothetical protein OsI_36656 [Oryza sativa Indica Group]
          Length = 314

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 25/63 (39%), Positives = 38/63 (60%)
 Frame = +1

Query: 28  IWHLDTTQRVKLFLWKAVKNALPTKENLSYQNIV*SSTCSRCNNQVESTSHALFHCIMLK 207
           IW  +  Q+V++F WKA+ N+LPT +N   +N+   STC  C  + E  +HAL HC   +
Sbjct: 59  IWACNVPQKVRIFAWKAISNSLPTMKNKKKRNLELLSTCCICGAEEEDVAHALCHCQQAR 118

Query: 208 RIW 216
            +W
Sbjct: 119 NLW 121


>gb|ABA94593.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1469

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 25/63 (39%), Positives = 38/63 (60%)
 Frame = +1

Query: 28   IWHLDTTQRVKLFLWKAVKNALPTKENLSYQNIV*SSTCSRCNNQVESTSHALFHCIMLK 207
            IW  +  Q+V++F WKA+ N+LPT +N   +N+   STC  C  + E  +HAL HC   +
Sbjct: 1194 IWACNVPQKVRIFAWKAISNSLPTMKNKKKRNLELLSTCCICGAEEEDVAHALCHCQQAR 1253

Query: 208  RIW 216
             +W
Sbjct: 1254 NLW 1256