BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019966
         (893 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...   132   1e-28
gb|EAZ07996.1| hypothetical protein OsI_30258 [Oryza sativa Indi...   131   2e-28
gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japo...   130   3e-28
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...   120   1e-27
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...   120   1e-27

>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score =  132 bits (332), Expect = 1e-28
 Identities = 79/242 (32%), Positives = 118/242 (48%), Gaps = 2/242 (0%)
 Frame = +2

Query: 167 AWNSIKADLPDRTFINKMSKTRKDLSLWNKHVFGNIFTNIKATQAKLNSVLSKPFSIGNY 346
           AWN+ +          K+    ++L  W+K  FG++   I+A + KL++   +  SI ++
Sbjct: 265 AWNAAEGG----RICEKLGAVARELQGWSKKTFGSLRKKIEAVEKKLHAAQGEATSIDSW 320

Query: 347 TKAKKLKEELQDWYIKEEDFWKQKSSNTWLKDGGRNTKFFHLSTIYXXXXXXXXXXXXXX 526
            +   L+ EL + + K E +W  +S    +KDG RNT +FH                   
Sbjct: 321 ERCVGLERELDELHAKNEAYWYLRSRVAEVKDGDRNTSYFHHKASQRKKRNLIHGIFDGG 380

Query: 527 GDWQEGRTEVGTSLNQYFKEIFTSDQPEINE--DILNLFQPCVTPTENDRLTAIPTSEEI 700
           G WQ    E+   + +YF+EIFTS +P  N+  ++L   +  VT   ND L    + EEI
Sbjct: 381 GRWQTEGEEIECVVERYFQEIFTSSEPSSNDFQEVLQHVKRSVTQEYNDILLKPYSKEEI 440

Query: 701 WAVVKKMGSLKSPRPDGFQGIFYQKCWDTIGPTVVDFVQDFFNLGSLNPEVNETFITLIP 880
           +A +  M   K+P PDG   IFYQ+ W  IG  V +FV    +  S    VN T I LIP
Sbjct: 441 FAALSDMHPCKAPGPDGMHAIFYQRFWHIIGDEVFNFVSSILHNYSCPGNVNCTNIALIP 500

Query: 881 KV 886
           KV
Sbjct: 501 KV 502


>gb|EAZ07996.1| hypothetical protein OsI_30258 [Oryza sativa Indica Group]
          Length = 633

 Score =  131 bits (330), Expect = 2e-28
 Identities = 74/234 (31%), Positives = 121/234 (51%)
 Frame = +2

Query: 182  KADLPDRTFINKMSKTRKDLSLWNKHVFGNIFTNIKATQAKLNSVLSKPFSIGNYTKAKK 361
            K DL D      + +   +L  W+K  F N+   I+ T+ KL+ +L    S  +  + ++
Sbjct: 345  KQDLSDTN--QALFRMMSNLRTWSKKKFRNVSREIEKTRKKLSELL---LSNTDSMEIRR 399

Query: 362  LKEELQDWYIKEEDFWKQKSSNTWLKDGGRNTKFFHLSTIYXXXXXXXXXXXXXXGDWQE 541
            + +++ +   +EE  W Q+S   WLK+G RNT+FFH   ++              G    
Sbjct: 400  VSDQMNELLYREEMIWLQRSRIAWLKEGDRNTRFFHSKAVWRAKKNKITKLRDSDGTVHS 459

Query: 542  GRTEVGTSLNQYFKEIFTSDQPEINEDILNLFQPCVTPTENDRLTAIPTSEEIWAVVKKM 721
               E+ +   +YF+ +FT+D    +  + +L +P VT   N+ L    + EEI   + ++
Sbjct: 460  TTKELESMATEYFQRLFTADPSIDHSRVTSLIKPKVTDAMNEELCKTVSEEEIANALFQI 519

Query: 722  GSLKSPRPDGFQGIFYQKCWDTIGPTVVDFVQDFFNLGSLNPEVNETFITLIPK 883
            G LK+P PDGF G FYQ+ W  +   +V  VQ+FF+ G++   VNET I LIPK
Sbjct: 520  GPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEFFSSGTMPSGVNETAIVLIPK 573


>gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japonica Group]
          Length = 1256

 Score =  130 bits (328), Expect = 3e-28
 Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 1/235 (0%)
 Frame = +2

Query: 182  KADLPDRTFINK-MSKTRKDLSLWNKHVFGNIFTNIKATQAKLNSVLSKPFSIGNYTKAK 358
            K DL D   IN+ + +   +L  W+K  F N+   I+ T+ KL+ +L    S  +  + +
Sbjct: 345  KQDLSD---INQALFRMMSNLRPWSKKKFRNVSREIEKTRKKLSELL---LSNTDSREIR 398

Query: 359  KLKEELQDWYIKEEDFWKQKSSNTWLKDGGRNTKFFHLSTIYXXXXXXXXXXXXXXGDWQ 538
            ++ +++ +   +EE  W Q+S   WLK+G RNT+FFH   ++              G   
Sbjct: 399  RVSDQMNELLYREEMIWLQRSRIAWLKEGDRNTRFFHSKAVWRAKKNKITKLRDSDGTVH 458

Query: 539  EGRTEVGTSLNQYFKEIFTSDQPEINEDILNLFQPCVTPTENDRLTAIPTSEEIWAVVKK 718
                E+ +   +YF+ +FT+D    +  + +L +P VT   N+ L    + EEI   + +
Sbjct: 459  NTTKELESMATEYFQRLFTADPSIDHSRVTSLIKPKVTDAMNEELCKTVSEEEIANALFQ 518

Query: 719  MGSLKSPRPDGFQGIFYQKCWDTIGPTVVDFVQDFFNLGSLNPEVNETFITLIPK 883
            +G LK+P PDGF G FYQ+ W  +   +V  VQ+FF+ G++   VNET I LIPK
Sbjct: 519  IGPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEFFSSGTMPSGVNETAIVLIPK 573


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score =  120 bits (302), Expect(2) = 1e-27
 Identities = 78/248 (31%), Positives = 118/248 (47%), Gaps = 5/248 (2%)
 Frame = +2

Query: 164  KAWNSIKADLPD--RTFINKMSKTRKDLSLWNKHVFGNIFTNIKATQAKLNSVLSKPFSI 337
            KA N  +  LPD  RT    M+K +            N+ + I+  Q  L + L K  S 
Sbjct: 643  KAINGQRKHLPDQVRTCRQAMAKLKHK---------SNLNSRIRINQ--LQAALDKAMSS 691

Query: 338  GNYTKAKKL---KEELQDWYIKEEDFWKQKSSNTWLKDGGRNTKFFHLSTIYXXXXXXXX 508
             N T+ + +   + EL   Y  EE +W+QKS N W+K+G RNT+FFH  T          
Sbjct: 692  VNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLV 751

Query: 509  XXXXXXGDWQEGRTEVGTSLNQYFKEIFTSDQPEINEDILNLFQPCVTPTENDRLTAIPT 688
                  G    G  E+G    ++F +++ S+   ++      F+P VT   ND LT   +
Sbjct: 752  TIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTKDLS 811

Query: 689  SEEIWAVVKKMGSLKSPRPDGFQGIFYQKCWDTIGPTVVDFVQDFFNLGSLNPEVNETFI 868
              EI+  +  +G  K+P PDG    FY+ CW+ +GP V+  V+ FF    +   +N T I
Sbjct: 812  DLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNI 871

Query: 869  TLIPKVAN 892
             +IPK+ N
Sbjct: 872  CMIPKITN 879



 Score = 29.3 bits (64), Expect(2) = 1e-27
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 12  FPNAQIRTWANATSDHISLFINLAKKAEKLPRPFKF 119
           FP A++       SDH  LF++L K   +  RPF+F
Sbjct: 588 FPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRF 623


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
            putative protein [Arabidopsis thaliana]
          Length = 1294

 Score =  120 bits (302), Expect(2) = 1e-27
 Identities = 78/248 (31%), Positives = 118/248 (47%), Gaps = 5/248 (2%)
 Frame = +2

Query: 164  KAWNSIKADLPD--RTFINKMSKTRKDLSLWNKHVFGNIFTNIKATQAKLNSVLSKPFSI 337
            KA N  +  LPD  RT    M+K +            N+ + I+  Q  L + L K  S 
Sbjct: 623  KAINGQRKHLPDQVRTCRQAMAKLKHK---------SNLNSRIRINQ--LQAALDKAMSS 671

Query: 338  GNYTKAKKL---KEELQDWYIKEEDFWKQKSSNTWLKDGGRNTKFFHLSTIYXXXXXXXX 508
             N T+ + +   + EL   Y  EE +W+QKS N W+K+G RNT+FFH  T          
Sbjct: 672  VNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLV 731

Query: 509  XXXXXXGDWQEGRTEVGTSLNQYFKEIFTSDQPEINEDILNLFQPCVTPTENDRLTAIPT 688
                  G    G  E+G    ++F +++ S+   ++      F+P VT   ND LT   +
Sbjct: 732  TIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTKDLS 791

Query: 689  SEEIWAVVKKMGSLKSPRPDGFQGIFYQKCWDTIGPTVVDFVQDFFNLGSLNPEVNETFI 868
              EI+  +  +G  K+P PDG    FY+ CW+ +GP V+  V+ FF    +   +N T I
Sbjct: 792  DLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNI 851

Query: 869  TLIPKVAN 892
             +IPK+ N
Sbjct: 852  CMIPKITN 859



 Score = 29.3 bits (64), Expect(2) = 1e-27
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 12  FPNAQIRTWANATSDHISLFINLAKKAEKLPRPFKF 119
           FP A++       SDH  LF++L K   +  RPF+F
Sbjct: 568 FPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRF 603