BLASTX nr result
ID: Coptis24_contig00019911
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00019911 (1147 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V... 66 2e-23 dbj|BAK05466.1| predicted protein [Hordeum vulgare subsp. vulgare] 66 1e-17 ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabi... 65 1e-17 ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus comm... 67 5e-17 gb|AAG52305.1|AC011020_12 putative DNA polymerase alpha subunit ... 63 6e-17 >ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera] gi|297738371|emb|CBI27572.3| unnamed protein product [Vitis vinifera] Length = 623 Score = 66.2 bits (160), Expect(3) = 2e-23 Identities = 31/49 (63%), Positives = 39/49 (79%) Frame = -3 Query: 401 ILCLNSFYPLYPPSEDVPLDLSLAPEALQILSIPDIVILPSDLSPSVTV 255 IL SFYPLYP +E +PLD SLAPEAL++ +IPD++ILPSDL+ V V Sbjct: 524 ILSQRSFYPLYPLAEGIPLDFSLAPEALEVSTIPDVLILPSDLASFVKV 572 Score = 45.4 bits (106), Expect(3) = 2e-23 Identities = 21/30 (70%), Positives = 25/30 (83%), Gaps = 1/30 (3%) Frame = -1 Query: 697 FPQPAFDIHS-DLKNQITCLANPGLFNANK 611 FPQPAF IH DLK+QIT L NPG+F+AN+ Sbjct: 456 FPQPAFSIHPPDLKHQITSLTNPGMFDANE 485 Score = 44.7 bits (104), Expect(3) = 2e-23 Identities = 18/28 (64%), Positives = 25/28 (89%) Frame = -2 Query: 600 QIKIGCCTVDILKQLSGEEISRIPSNVS 517 ++K+GCCTVD++KQLSGE ISR P++ S Sbjct: 485 EVKVGCCTVDVIKQLSGEMISRNPTDGS 512 >dbj|BAK05466.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 625 Score = 66.2 bits (160), Expect(2) = 1e-17 Identities = 30/48 (62%), Positives = 39/48 (81%) Frame = -3 Query: 386 SFYPLYPPSEDVPLDLSLAPEALQILSIPDIVILPSDLSPSVTVSEVH 243 S+YPLYPP+ VP+D SLA EAL+I S PD+++LPSDL+PSV V V+ Sbjct: 533 SYYPLYPPAAGVPMDFSLAKEALEIPSAPDVLLLPSDLAPSVKVLSVN 580 Score = 50.4 bits (119), Expect(2) = 1e-17 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 6/85 (7%) Frame = -1 Query: 697 FPQPAFDIH--SDLKNQITCLANPGLFNANKF----CVSDKNRLLHCGYPETA*WGRNLK 536 FPQPAFD+H D+ QITCL+NP LF++N+ C D + L G Sbjct: 459 FPQPAFDLHLPEDITQQITCLSNPSLFSSNEIQFGCCTVDILKQLSGDEISRKPPGGKAA 518 Query: 535 NSV*CIWDCVGRLATHVLSQRRHAP 461 D +GRLATH++ Q+ + P Sbjct: 519 -------DRIGRLATHIVKQQSYYP 536 >ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabidopsis lyrata subsp. lyrata] gi|297334453|gb|EFH64871.1| DNA polymerase alpha subunit B family [Arabidopsis lyrata subsp. lyrata] Length = 619 Score = 65.1 bits (157), Expect(2) = 1e-17 Identities = 30/43 (69%), Positives = 36/43 (83%) Frame = -3 Query: 401 ILCLNSFYPLYPPSEDVPLDLSLAPEALQILSIPDIVILPSDL 273 +L SFYPLYPP E +P D SLAP+ALQILSIPDI++LPSD+ Sbjct: 523 LLRQRSFYPLYPPPESLPYDSSLAPKALQILSIPDILLLPSDM 565 Score = 51.6 bits (122), Expect(2) = 1e-17 Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 3/49 (6%) Frame = -2 Query: 657 IRLPVLQIQGFSMQISSVF---QIKIGCCTVDILKQLSGEEISRIPSNV 520 I +P L+ Q S+ F Q+K+GCCTVD+LKQLSGEE+S+ PS V Sbjct: 463 IHIPDLEHQMTSLSNPGTFEANQVKVGCCTVDVLKQLSGEEMSKNPSGV 511 >ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus communis] gi|223546049|gb|EEF47552.1| alpha DNA polymerase, putative [Ricinus communis] Length = 621 Score = 67.4 bits (163), Expect(2) = 5e-17 Identities = 32/49 (65%), Positives = 38/49 (77%) Frame = -3 Query: 401 ILCLNSFYPLYPPSEDVPLDLSLAPEALQILSIPDIVILPSDLSPSVTV 255 IL SFYPLYPP+EDVPLD SLAPEAL I S+P I+I+PSD+ + V Sbjct: 522 ILSQRSFYPLYPPAEDVPLDFSLAPEALHIPSVPHILIVPSDMKYFIKV 570 Score = 47.4 bits (111), Expect(2) = 5e-17 Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 5/84 (5%) Frame = -1 Query: 697 FPQPAFDIH-SDLKNQITCLANPGLFNANKF----CVSDKNRLLHCGYPETA*WGRNLKN 533 FPQPAFDIH S+L++QI L NPG+F AN+ C D + L G E + RN + Sbjct: 454 FPQPAFDIHRSNLQHQIRSLTNPGIFEANQVRVGCCTVDIIKQL--GSEEMS---RNPTD 508 Query: 532 SV*CIWDCVGRLATHVLSQRRHAP 461 + + RLA H+LSQR P Sbjct: 509 GTPS--NRMSRLANHILSQRSFYP 530 >gb|AAG52305.1|AC011020_12 putative DNA polymerase alpha subunit [Arabidopsis thaliana] Length = 620 Score = 62.8 bits (151), Expect(3) = 6e-17 Identities = 29/43 (67%), Positives = 35/43 (81%) Frame = -3 Query: 401 ILCLNSFYPLYPPSEDVPLDLSLAPEALQILSIPDIVILPSDL 273 +L SFYPLYPP E +P D SLAP+ALQI SIPDI++LPSD+ Sbjct: 532 LLRQRSFYPLYPPPESLPYDSSLAPKALQISSIPDILLLPSDM 574 Score = 46.6 bits (109), Expect(3) = 6e-17 Identities = 19/27 (70%), Positives = 24/27 (88%) Frame = -2 Query: 600 QIKIGCCTVDILKQLSGEEISRIPSNV 520 Q+K+ CCTVD+LKQLSGEE+S+ PS V Sbjct: 494 QVKVSCCTVDVLKQLSGEEMSKNPSGV 520 Score = 25.0 bits (53), Expect(3) = 6e-17 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%) Frame = -1 Query: 697 FPQPAFDIH-SDLKNQIT 647 FPQP FDIH DL++Q + Sbjct: 457 FPQPPFDIHIPDLEHQFS 474