BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019911
         (1147 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V...    66   2e-23
dbj|BAK05466.1| predicted protein [Hordeum vulgare subsp. vulgare]     66   1e-17
ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabi...    65   1e-17
ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus comm...    67   5e-17
gb|AAG52305.1|AC011020_12 putative DNA polymerase alpha subunit ...    63   6e-17

>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
           gi|297738371|emb|CBI27572.3| unnamed protein product
           [Vitis vinifera]
          Length = 623

 Score = 66.2 bits (160), Expect(3) = 2e-23
 Identities = 31/49 (63%), Positives = 39/49 (79%)
 Frame = -3

Query: 401 ILCLNSFYPLYPPSEDVPLDLSLAPEALQILSIPDIVILPSDLSPSVTV 255
           IL   SFYPLYP +E +PLD SLAPEAL++ +IPD++ILPSDL+  V V
Sbjct: 524 ILSQRSFYPLYPLAEGIPLDFSLAPEALEVSTIPDVLILPSDLASFVKV 572



 Score = 45.4 bits (106), Expect(3) = 2e-23
 Identities = 21/30 (70%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = -1

Query: 697 FPQPAFDIHS-DLKNQITCLANPGLFNANK 611
           FPQPAF IH  DLK+QIT L NPG+F+AN+
Sbjct: 456 FPQPAFSIHPPDLKHQITSLTNPGMFDANE 485



 Score = 44.7 bits (104), Expect(3) = 2e-23
 Identities = 18/28 (64%), Positives = 25/28 (89%)
 Frame = -2

Query: 600 QIKIGCCTVDILKQLSGEEISRIPSNVS 517
           ++K+GCCTVD++KQLSGE ISR P++ S
Sbjct: 485 EVKVGCCTVDVIKQLSGEMISRNPTDGS 512


>dbj|BAK05466.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 625

 Score = 66.2 bits (160), Expect(2) = 1e-17
 Identities = 30/48 (62%), Positives = 39/48 (81%)
 Frame = -3

Query: 386 SFYPLYPPSEDVPLDLSLAPEALQILSIPDIVILPSDLSPSVTVSEVH 243
           S+YPLYPP+  VP+D SLA EAL+I S PD+++LPSDL+PSV V  V+
Sbjct: 533 SYYPLYPPAAGVPMDFSLAKEALEIPSAPDVLLLPSDLAPSVKVLSVN 580



 Score = 50.4 bits (119), Expect(2) = 1e-17
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
 Frame = -1

Query: 697 FPQPAFDIH--SDLKNQITCLANPGLFNANKF----CVSDKNRLLHCGYPETA*WGRNLK 536
           FPQPAFD+H   D+  QITCL+NP LF++N+     C  D  + L          G    
Sbjct: 459 FPQPAFDLHLPEDITQQITCLSNPSLFSSNEIQFGCCTVDILKQLSGDEISRKPPGGKAA 518

Query: 535 NSV*CIWDCVGRLATHVLSQRRHAP 461
                  D +GRLATH++ Q+ + P
Sbjct: 519 -------DRIGRLATHIVKQQSYYP 536


>ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabidopsis lyrata subsp.
           lyrata] gi|297334453|gb|EFH64871.1| DNA polymerase alpha
           subunit B family [Arabidopsis lyrata subsp. lyrata]
          Length = 619

 Score = 65.1 bits (157), Expect(2) = 1e-17
 Identities = 30/43 (69%), Positives = 36/43 (83%)
 Frame = -3

Query: 401 ILCLNSFYPLYPPSEDVPLDLSLAPEALQILSIPDIVILPSDL 273
           +L   SFYPLYPP E +P D SLAP+ALQILSIPDI++LPSD+
Sbjct: 523 LLRQRSFYPLYPPPESLPYDSSLAPKALQILSIPDILLLPSDM 565



 Score = 51.6 bits (122), Expect(2) = 1e-17
 Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
 Frame = -2

Query: 657 IRLPVLQIQGFSMQISSVF---QIKIGCCTVDILKQLSGEEISRIPSNV 520
           I +P L+ Q  S+     F   Q+K+GCCTVD+LKQLSGEE+S+ PS V
Sbjct: 463 IHIPDLEHQMTSLSNPGTFEANQVKVGCCTVDVLKQLSGEEMSKNPSGV 511


>ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus communis]
           gi|223546049|gb|EEF47552.1| alpha DNA polymerase,
           putative [Ricinus communis]
          Length = 621

 Score = 67.4 bits (163), Expect(2) = 5e-17
 Identities = 32/49 (65%), Positives = 38/49 (77%)
 Frame = -3

Query: 401 ILCLNSFYPLYPPSEDVPLDLSLAPEALQILSIPDIVILPSDLSPSVTV 255
           IL   SFYPLYPP+EDVPLD SLAPEAL I S+P I+I+PSD+   + V
Sbjct: 522 ILSQRSFYPLYPPAEDVPLDFSLAPEALHIPSVPHILIVPSDMKYFIKV 570



 Score = 47.4 bits (111), Expect(2) = 5e-17
 Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
 Frame = -1

Query: 697 FPQPAFDIH-SDLKNQITCLANPGLFNANKF----CVSDKNRLLHCGYPETA*WGRNLKN 533
           FPQPAFDIH S+L++QI  L NPG+F AN+     C  D  + L  G  E +   RN  +
Sbjct: 454 FPQPAFDIHRSNLQHQIRSLTNPGIFEANQVRVGCCTVDIIKQL--GSEEMS---RNPTD 508

Query: 532 SV*CIWDCVGRLATHVLSQRRHAP 461
                 + + RLA H+LSQR   P
Sbjct: 509 GTPS--NRMSRLANHILSQRSFYP 530


>gb|AAG52305.1|AC011020_12 putative DNA polymerase alpha subunit [Arabidopsis thaliana]
          Length = 620

 Score = 62.8 bits (151), Expect(3) = 6e-17
 Identities = 29/43 (67%), Positives = 35/43 (81%)
 Frame = -3

Query: 401 ILCLNSFYPLYPPSEDVPLDLSLAPEALQILSIPDIVILPSDL 273
           +L   SFYPLYPP E +P D SLAP+ALQI SIPDI++LPSD+
Sbjct: 532 LLRQRSFYPLYPPPESLPYDSSLAPKALQISSIPDILLLPSDM 574



 Score = 46.6 bits (109), Expect(3) = 6e-17
 Identities = 19/27 (70%), Positives = 24/27 (88%)
 Frame = -2

Query: 600 QIKIGCCTVDILKQLSGEEISRIPSNV 520
           Q+K+ CCTVD+LKQLSGEE+S+ PS V
Sbjct: 494 QVKVSCCTVDVLKQLSGEEMSKNPSGV 520



 Score = 25.0 bits (53), Expect(3) = 6e-17
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -1

Query: 697 FPQPAFDIH-SDLKNQIT 647
           FPQP FDIH  DL++Q +
Sbjct: 457 FPQPPFDIHIPDLEHQFS 474