BLASTX nr result

ID: Coptis24_contig00019901 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019901
         (257 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003530891.1| PREDICTED: nuclear pore complex protein Nup1...    85   7e-15
ref|XP_003525230.1| PREDICTED: nuclear pore complex protein Nup1...    85   7e-15
ref|XP_002281257.2| PREDICTED: nuclear pore complex protein Nup1...    84   2e-14
emb|CBI26832.3| unnamed protein product [Vitis vinifera]               84   2e-14
ref|XP_003630944.1| Nuclear pore complex protein Nup155 [Medicag...    78   7e-13

>ref|XP_003530891.1| PREDICTED: nuclear pore complex protein Nup155-like [Glycine max]
          Length = 1486

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 39/53 (73%), Positives = 46/53 (86%)
 Frame = +2

Query: 2   KNLVNQRDSQLGGRQSAGSRTATRASKPSIVCITPLSTVESKWLHFVAVLSDG 160
           +NLVNQRD+  G RQS GSR ++R+ KPSIVCI+PLST+ESKWLH VAVLSDG
Sbjct: 296 RNLVNQRDAHYGARQSTGSRVSSRSPKPSIVCISPLSTLESKWLHLVAVLSDG 348


>ref|XP_003525230.1| PREDICTED: nuclear pore complex protein Nup155-like [Glycine max]
          Length = 1485

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 39/53 (73%), Positives = 46/53 (86%)
 Frame = +2

Query: 2   KNLVNQRDSQLGGRQSAGSRTATRASKPSIVCITPLSTVESKWLHFVAVLSDG 160
           +NLVNQRD+  G RQS GSR ++R+ KPSIVCI+PLST+ESKWLH VAVLSDG
Sbjct: 296 RNLVNQRDAHYGARQSTGSRVSSRSPKPSIVCISPLSTLESKWLHLVAVLSDG 348


>ref|XP_002281257.2| PREDICTED: nuclear pore complex protein Nup155-like [Vitis
           vinifera]
          Length = 1496

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 37/53 (69%), Positives = 47/53 (88%)
 Frame = +2

Query: 2   KNLVNQRDSQLGGRQSAGSRTATRASKPSIVCITPLSTVESKWLHFVAVLSDG 160
           ++L+NQ+D+  GGRQSAGSR + R+ KPSI+CI+PLST+ESKWLH VAVLSDG
Sbjct: 296 RSLINQKDAHYGGRQSAGSRPSNRSVKPSIICISPLSTLESKWLHLVAVLSDG 348


>emb|CBI26832.3| unnamed protein product [Vitis vinifera]
          Length = 377

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 37/53 (69%), Positives = 47/53 (88%)
 Frame = +2

Query: 2   KNLVNQRDSQLGGRQSAGSRTATRASKPSIVCITPLSTVESKWLHFVAVLSDG 160
           ++L+NQ+D+  GGRQSAGSR + R+ KPSI+CI+PLST+ESKWLH VAVLSDG
Sbjct: 296 RSLINQKDAHYGGRQSAGSRPSNRSVKPSIICISPLSTLESKWLHLVAVLSDG 348


>ref|XP_003630944.1| Nuclear pore complex protein Nup155 [Medicago truncatula]
           gi|355524966|gb|AET05420.1| Nuclear pore complex protein
           Nup155 [Medicago truncatula]
          Length = 1484

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 37/53 (69%), Positives = 46/53 (86%)
 Frame = +2

Query: 2   KNLVNQRDSQLGGRQSAGSRTATRASKPSIVCITPLSTVESKWLHFVAVLSDG 160
           +NLVN +D+  GGRQS+GSR ++R+ KPSIVCI+PLST+ESK LH VAVLSDG
Sbjct: 296 RNLVNHKDAHHGGRQSSGSRVSSRSPKPSIVCISPLSTLESKSLHLVAVLSDG 348


Top