BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019839
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containi...    62   4e-08
ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containi...    62   4e-08
ref|XP_003636545.1| Pentatricopeptide repeat-containing protein ...    61   1e-07
ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [S...    61   1e-07
ref|NP_001031033.1| pentatricopeptide repeat-containing protein ...    60   1e-07

>ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 26/50 (52%), Positives = 38/50 (76%)
 Frame = +3

Query: 288 DMPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVVTFN 437
           +M  + + PNVVTFN+L+  LCKEGK  EA  + E+M+QRGI+P ++T+N
Sbjct: 302 EMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 351


>ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 26/50 (52%), Positives = 38/50 (76%)
 Frame = +3

Query: 288 DMPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVVTFN 437
           +M  + + PNVVTFN+L+  LCKEGK  EA  + E+M+QRGI+P ++T+N
Sbjct: 294 EMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 343


>ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355502480|gb|AES83683.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 31/63 (49%), Positives = 41/63 (65%)
 Frame = +3

Query: 249 IVVPFKTLCITIEDMPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVV 428
           IV  FK       +M  ++I+P+  TFNILV ALCKEGK  EA  V  +M++ G+ PTVV
Sbjct: 240 IVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVV 299

Query: 429 TFN 437
           T+N
Sbjct: 300 TYN 302


>ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
           gi|241924415|gb|EER97559.1| hypothetical protein
           SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 27/51 (52%), Positives = 38/51 (74%)
 Frame = +3

Query: 285 EDMPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVVTFN 437
           EDM +R I P+V+ F  L+  LCKEGKT +A +V ++M+QRG+ P VVT+N
Sbjct: 217 EDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYN 267



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 24/49 (48%), Positives = 35/49 (71%)
 Frame = +3

Query: 291 MPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVVTFN 437
           M +R + PNVVT+N+L+ +LCKEG   EAL + + M  +G+ P VVT+N
Sbjct: 254 MVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYN 302


>ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
           gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity
           to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
           gi|332190806|gb|AEE28927.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 38/52 (73%)
 Frame = +3

Query: 282 IEDMPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVVTFN 437
           + DM KR ISPNVVTF++L+ +  KEGK  EA Q+ + M+QRGI P  +T+N
Sbjct: 321 LRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYN 372



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 21/52 (40%), Positives = 37/52 (71%)
 Frame = +3

Query: 282 IEDMPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVVTFN 437
           +++M +R I+PN +T+N L+   CKE +  EA+Q+ +LM+ +G  P ++TFN
Sbjct: 356 LKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFN 407