BLASTX nr result
ID: Coptis24_contig00019839
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00019839 (437 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containi... 62 4e-08 ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containi... 62 4e-08 ref|XP_003636545.1| Pentatricopeptide repeat-containing protein ... 61 1e-07 ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [S... 61 1e-07 ref|NP_001031033.1| pentatricopeptide repeat-containing protein ... 60 1e-07 >ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] Length = 605 Score = 62.4 bits (150), Expect = 4e-08 Identities = 26/50 (52%), Positives = 38/50 (76%) Frame = +3 Query: 288 DMPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVVTFN 437 +M + + PNVVTFN+L+ LCKEGK EA + E+M+QRGI+P ++T+N Sbjct: 302 EMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 351 >ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] Length = 597 Score = 62.4 bits (150), Expect = 4e-08 Identities = 26/50 (52%), Positives = 38/50 (76%) Frame = +3 Query: 288 DMPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVVTFN 437 +M + + PNVVTFN+L+ LCKEGK EA + E+M+QRGI+P ++T+N Sbjct: 294 EMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 343 >ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 1280 Score = 60.8 bits (146), Expect = 1e-07 Identities = 31/63 (49%), Positives = 41/63 (65%) Frame = +3 Query: 249 IVVPFKTLCITIEDMPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVV 428 IV FK +M ++I+P+ TFNILV ALCKEGK EA V +M++ G+ PTVV Sbjct: 240 IVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVV 299 Query: 429 TFN 437 T+N Sbjct: 300 TYN 302 >ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor] gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor] Length = 595 Score = 60.8 bits (146), Expect = 1e-07 Identities = 27/51 (52%), Positives = 38/51 (74%) Frame = +3 Query: 285 EDMPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVVTFN 437 EDM +R I P+V+ F L+ LCKEGKT +A +V ++M+QRG+ P VVT+N Sbjct: 217 EDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYN 267 Score = 55.8 bits (133), Expect = 3e-06 Identities = 24/49 (48%), Positives = 35/49 (71%) Frame = +3 Query: 291 MPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVVTFN 437 M +R + PNVVT+N+L+ +LCKEG EAL + + M +G+ P VVT+N Sbjct: 254 MVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYN 302 >ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12775, mitochondrial; Flags: Precursor gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains multiple PPR PF|01535 repeats. EST gb|AI999079 comes from this gene [Arabidopsis thaliana] gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 644 Score = 60.5 bits (145), Expect = 1e-07 Identities = 28/52 (53%), Positives = 38/52 (73%) Frame = +3 Query: 282 IEDMPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVVTFN 437 + DM KR ISPNVVTF++L+ + KEGK EA Q+ + M+QRGI P +T+N Sbjct: 321 LRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYN 372 Score = 54.7 bits (130), Expect = 8e-06 Identities = 21/52 (40%), Positives = 37/52 (71%) Frame = +3 Query: 282 IEDMPKRSISPNVVTFNILVYALCKEGKTNEALQVSELMLQRGIIPTVVTFN 437 +++M +R I+PN +T+N L+ CKE + EA+Q+ +LM+ +G P ++TFN Sbjct: 356 LKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFN 407