BLASTX nr result

ID: Coptis24_contig00019815 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019815
         (549 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002325438.1| cationic amino acid transporter [Populus tri...   184   1e-44
gb|AAN77151.1| fiber protein Fb12 [Gossypium barbadense]              182   3e-44
ref|XP_002319189.1| cationic amino acid transporter [Populus tri...   177   1e-42
tpg|DAA47584.1| TPA: hypothetical protein ZEAMMB73_217051 [Zea m...   176   2e-42
ref|NP_198510.2| cationic amino acid transporter 3 [Arabidopsis ...   175   5e-42

>ref|XP_002325438.1| cationic amino acid transporter [Populus trichocarpa]
           gi|222862313|gb|EEE99819.1| cationic amino acid
           transporter [Populus trichocarpa]
          Length = 641

 Score =  184 bits (466), Expect = 1e-44
 Identities = 83/117 (70%), Positives = 99/117 (84%)
 Frame = -1

Query: 549 LPSFARISVCAVGGMLLLCGLFILYWVDQDDARHSFGHAGGFLCPFVPLLPIVCILVNVY 370
           LPS  R + C VGG LLL GL +L  ++QDDARHSFGH+GGF+CPFVPLLPIVCILVN+Y
Sbjct: 525 LPSPLRFTTCGVGGALLLSGLIVLTCIEQDDARHSFGHSGGFICPFVPLLPIVCILVNIY 584

Query: 369 LMINLGAGTWIRVSIWMIIGIFVYLFYGRTHSSLRNAVYVTTSHAEEIYRSSSEHLA 199
           L+INLGA TW RVS+W+I+G+ VY+FYGR HSSLR+AVYV  +HA+EIYRSS E LA
Sbjct: 585 LLINLGAATWTRVSVWLIVGVLVYVFYGRKHSSLRDAVYVPATHADEIYRSSGESLA 641


>gb|AAN77151.1| fiber protein Fb12 [Gossypium barbadense]
          Length = 117

 Score =  182 bits (462), Expect = 3e-44
 Identities = 80/117 (68%), Positives = 100/117 (85%)
 Frame = -1

Query: 549 LPSFARISVCAVGGMLLLCGLFILYWVDQDDARHSFGHAGGFLCPFVPLLPIVCILVNVY 370
           +PS  R++ C VGG+LLL GL +L  +DQDDARH+FGH GGF+CPFVPLLPIVCIL+NVY
Sbjct: 1   IPSLIRLTCCGVGGLLLLSGLIVLTCIDQDDARHNFGHTGGFICPFVPLLPIVCILINVY 60

Query: 369 LMINLGAGTWIRVSIWMIIGIFVYLFYGRTHSSLRNAVYVTTSHAEEIYRSSSEHLA 199
           L+INLGA TW RVS+W++IG+ VY+FYGR+HSSL +AVYV  +HA+EIYRSS + LA
Sbjct: 61  LLINLGAATWARVSVWLLIGVVVYVFYGRSHSSLLDAVYVPAAHADEIYRSSGDSLA 117


>ref|XP_002319189.1| cationic amino acid transporter [Populus trichocarpa]
           gi|222857565|gb|EEE95112.1| cationic amino acid
           transporter [Populus trichocarpa]
          Length = 640

 Score =  177 bits (448), Expect = 1e-42
 Identities = 79/117 (67%), Positives = 95/117 (81%)
 Frame = -1

Query: 549 LPSFARISVCAVGGMLLLCGLFILYWVDQDDARHSFGHAGGFLCPFVPLLPIVCILVNVY 370
           LP   R  VC +GG LLL GL +L  ++QDDARH+FGH+GGF+CPFVPLLPIVC LVN+Y
Sbjct: 524 LPRLLRFIVCGIGGALLLFGLIVLTCIEQDDARHTFGHSGGFICPFVPLLPIVCFLVNIY 583

Query: 369 LMINLGAGTWIRVSIWMIIGIFVYLFYGRTHSSLRNAVYVTTSHAEEIYRSSSEHLA 199
           L+INLGA TW RVS+W+I+G+ VY FYGRTHSSL +AVYV  +HA+EIYRSS E  A
Sbjct: 584 LLINLGAATWTRVSVWLIVGVLVYTFYGRTHSSLLDAVYVPATHADEIYRSSGESSA 640


>tpg|DAA47584.1| TPA: hypothetical protein ZEAMMB73_217051 [Zea mays]
          Length = 624

 Score =  176 bits (446), Expect = 2e-42
 Identities = 76/113 (67%), Positives = 94/113 (83%)
 Frame = -1

Query: 549 LPSFARISVCAVGGMLLLCGLFILYWVDQDDARHSFGHAGGFLCPFVPLLPIVCILVNVY 370
           LP   R SVC +GGMLLL GL +L W+DQDD RHSFGH+GGF+CPFVPLLP++CIL+N Y
Sbjct: 506 LPFPVRCSVCVLGGMLLLAGLGMLCWIDQDDGRHSFGHSGGFICPFVPLLPVMCILINTY 565

Query: 369 LMINLGAGTWIRVSIWMIIGIFVYLFYGRTHSSLRNAVYVTTSHAEEIYRSSS 211
           L+INLG GTW+RV +W+++G+FVY+FYGRTHSSL + VYV  + A EIY SSS
Sbjct: 566 LLINLGGGTWMRVGVWLVMGVFVYIFYGRTHSSLTDVVYVPVAEANEIYGSSS 618


>ref|NP_198510.2| cationic amino acid transporter 3 [Arabidopsis thaliana]
           gi|75299609|sp|Q8GYB4.1|CAAT3_ARATH RecName:
           Full=Cationic amino acid transporter 3, mitochondrial;
           Flags: Precursor gi|26450566|dbj|BAC42395.1| putative
           cationic amino acid transporter [Arabidopsis thaliana]
           gi|332006747|gb|AED94130.1| cationic amino acid
           transporter 3 [Arabidopsis thaliana]
          Length = 609

 Score =  175 bits (443), Expect = 5e-42
 Identities = 76/117 (64%), Positives = 97/117 (82%)
 Frame = -1

Query: 549 LPSFARISVCAVGGMLLLCGLFILYWVDQDDARHSFGHAGGFLCPFVPLLPIVCILVNVY 370
           LP   R S+C VGG+ LL GL +L  +DQDDARHSFGH+GGF+CPFVPLLPIVCIL+N+Y
Sbjct: 493 LPGLLRYSLCGVGGLFLLVGLIVLICIDQDDARHSFGHSGGFICPFVPLLPIVCILINMY 552

Query: 369 LMINLGAGTWIRVSIWMIIGIFVYLFYGRTHSSLRNAVYVTTSHAEEIYRSSSEHLA 199
           L++NLGA TW+RVS+W+ +G+ VY+FYGR +SSL NAVYV+T+H +EI R+S   LA
Sbjct: 553 LLVNLGAATWVRVSVWLFLGVVVYIFYGRRNSSLVNAVYVSTAHLQEIRRTSGHSLA 609


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