BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019747
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525134.1| pentatricopeptide repeat-containing protein,...   176   2e-42
ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|2...   165   3e-39
ref|XP_002876469.1| pentatricopeptide repeat-containing protein ...   164   5e-39
ref|NP_191418.2| pentatricopeptide repeat-containing protein [Ar...   164   7e-39
dbj|BAF01499.1| hypothetical protein [Arabidopsis thaliana]           164   7e-39

>ref|XP_002525134.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535593|gb|EEF37261.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 792

 Score =  176 bits (445), Expect = 2e-42
 Identities = 84/137 (61%), Positives = 105/137 (76%)
 Frame = -1

Query: 413 DNYTLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKV 234
           DNYT VSLLS S+++CDLALGS+IHG +IK NFS CD FVCN+L+DMY KCG + SSVK+
Sbjct: 544 DNYTYVSLLSSSSQICDLALGSSIHGFLIKNNFSSCDTFVCNVLLDMYGKCGCLRSSVKI 603

Query: 233 FNEMPKKNLFSWTALISALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSACRHXXXX 54
           FN M  +NL +WTALISALG++     ALERF++ME  G++PD+VAFIAVL+ACRH    
Sbjct: 604 FNSMRDRNLITWTALISALGINSCAHEALERFKDMEHQGLRPDKVAFIAVLTACRHGALV 663

Query: 53  XXXXXLFGRMKGYNVEP 3
                LF +MK Y +EP
Sbjct: 664 GEGIELFKKMKSYGLEP 680



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 30/97 (30%), Positives = 51/97 (52%)
 Frame = -1

Query: 362 LALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALIS 183
           L  G  IH  + K  F    + V N ++ +Y KC ++  + K F E   K++ +W  +I 
Sbjct: 231 LEFGEQIHSLVTKTGFDYT-VSVVNSVISVYVKCATLHLAEKKFEEAACKDIVTWNTMIV 289

Query: 182 ALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSAC 72
           AL     P  ALE F +M    I+P+++ F +++S+C
Sbjct: 290 ALAKSEKPIKALELFFKMPRDAIRPNQITFASLISSC 326



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
 Frame = -1

Query: 413 DNYTLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKV 234
           +N+TL  LLS S    DL++G  +    +K      D FV   L++++ + G +  ++ V
Sbjct: 113 NNFTLSGLLSCSKM--DLSIGLQLQALAMKNGLFYIDAFVGTALLNVFGRWGWLNEALHV 170

Query: 233 FNEMPKKNLFSWTALISALGLHGFPCVALERFREM-ESVGIKPDRVAFIAVLS 78
           F ++P K+L +W ++I   G HG+    +  F E+   +G      +F+ VLS
Sbjct: 171 FEDLPIKSLVTWNSIICLFGQHGYVEDCIIYFCELHREIGCCLSECSFVGVLS 223


>ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|222862901|gb|EEF00408.1|
           predicted protein [Populus trichocarpa]
          Length = 737

 Score =  165 bits (418), Expect = 3e-39
 Identities = 78/137 (56%), Positives = 105/137 (76%)
 Frame = -1

Query: 413 DNYTLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKV 234
           DNYT  SLL +S+++C+LALGS+IHG +IK NFS  D+ V N+L+DMY KCG++ESS K+
Sbjct: 543 DNYTYTSLLCVSSKVCNLALGSSIHGLLIKTNFSYFDIVVRNVLIDMYGKCGNLESSAKI 602

Query: 233 FNEMPKKNLFSWTALISALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSACRHXXXX 54
           F+ M ++NL +WTALISALG++G    ALERF +ME +G +PD+VAFIAVL+ACRH    
Sbjct: 603 FDSMTERNLITWTALISALGINGCAQEALERFNDMEFLGSRPDKVAFIAVLTACRHGALV 662

Query: 53  XXXXXLFGRMKGYNVEP 3
                LFG+M  Y++EP
Sbjct: 663 REGMQLFGKMNNYHIEP 679



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 36/98 (36%), Positives = 57/98 (58%)
 Frame = -1

Query: 365 DLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALI 186
           DL  G  IHG +IK     C++ V N L++MYA+  SM    K+F E+  +++ +W  +I
Sbjct: 229 DLEFGGQIHGLVIKSGLD-CEVLVSNSLINMYARRSSMSQVEKLFEEVDGRDVVTWNTII 287

Query: 185 SALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSAC 72
           SA      P  ALE F +M   GI P++  F++V+++C
Sbjct: 288 SAFSKSKNPGKALEVFLKMSEDGIMPNQTTFVSVINSC 325



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
 Frame = -1

Query: 413 DNYTLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKV 234
           +N+TL  LLS ++   D+  G  +    IK      D+FV   L+ ++ +CG ++ +  V
Sbjct: 113 NNFTLSGLLSCASM--DVGRGIMLQALAIKNGLFCSDVFVGTALLGLFGRCGWLDEAFHV 170

Query: 233 FNEMPKKNLFSWTALISALGLHGF--PCVALERFREMESVGIKPDRVAFIAVLS 78
           F +MP K+L +W ++IS LG HGF   CV L  FR++        + +F  VLS
Sbjct: 171 FEDMPDKSLVTWNSMISLLGHHGFVEDCVVL--FRKLVRKEGSLSKCSFEGVLS 222



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
 Frame = -1

Query: 404 TLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNE 225
           T VS+++  T L     G  +HG ++K      D+++ + LVD YAKCG ++++   F E
Sbjct: 317 TFVSVINSCTSLLVPMCGEYVHGKIVKTALET-DVYLGSALVDYYAKCGKLDNAHYCFRE 375

Query: 224 MPKKNLFSWTALISALGLH-GFPCVALERFREMESVGIKPDRVAFIAVLSA 75
           + +KN+ SW +LI        F  V+L    EM  +G +P+  +F AVL +
Sbjct: 376 IHQKNVVSWNSLILGYANKCSFASVSL--LLEMLKLGFRPNEFSFSAVLKS 424


>ref|XP_002876469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322307|gb|EFH52728.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 741

 Score =  164 bits (416), Expect = 5e-39
 Identities = 77/137 (56%), Positives = 103/137 (75%)
 Frame = -1

Query: 413 DNYTLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKV 234
           DNYT VS+LS+ ++LCDL LGS+IHG + K +FS  D FVCN+L+DMY KCGS+ S +KV
Sbjct: 544 DNYTFVSILSLCSKLCDLTLGSSIHGLITKTDFSCVDTFVCNVLIDMYGKCGSIRSVIKV 603

Query: 233 FNEMPKKNLFSWTALISALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSACRHXXXX 54
           F E  +KNL +WTALIS+LG++G+   ALE+F+E  S+G KPDRV+FI++L+ACRH    
Sbjct: 604 FEETREKNLITWTALISSLGIYGYGHEALEKFKETLSLGFKPDRVSFISILTACRHGGMV 663

Query: 53  XXXXXLFGRMKGYNVEP 3
                LF +MK Y +EP
Sbjct: 664 KEGMDLFQKMKDYGIEP 680



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 41/111 (36%), Positives = 60/111 (54%)
 Frame = -1

Query: 404 TLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNE 225
           T +S+L  S+    L+ G  IHG +IK N  + D+F+ N L+D YAKCGS+E S   F+ 
Sbjct: 318 TYISVLGASSLRQLLSFGRQIHGMLIK-NGCKTDIFLGNALIDFYAKCGSLEDSHLCFDY 376

Query: 224 MPKKNLFSWTALISALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSAC 72
           +  KN+  W AL+S       P + L  F +M  +G +P    F   L +C
Sbjct: 377 IRDKNIVCWNALLSGYSNKDGP-ICLSLFLQMLQMGFRPTEYTFSTTLKSC 426



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/108 (30%), Positives = 56/108 (51%)
 Frame = -1

Query: 404 TLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNE 225
           T+  LLS ++   D+  G+ +HG  +K      D +V   L+  Y +   +E + +VF +
Sbjct: 117 TVSGLLSCAS--LDIRAGTQLHGLSLKYGLFMADAYVGTCLLCFYGRLELLEMAEQVFED 174

Query: 224 MPKKNLFSWTALISALGLHGFPCVALERFREMESVGIKPDRVAFIAVL 81
           MP K+L +W  ++S LG HGF    +  FRE+  +G      + + VL
Sbjct: 175 MPFKSLETWNHMMSLLGHHGFLKECMFLFRELVGMGACLTESSLLGVL 222


>ref|NP_191418.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218525906|sp|Q0WN01.2|PP286_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g58590 gi|332646281|gb|AEE79802.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  164 bits (415), Expect = 7e-39
 Identities = 78/137 (56%), Positives = 101/137 (73%)
 Frame = -1

Query: 413 DNYTLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKV 234
           D YT VS+LS+ ++LCDL LGS+IHG + K +FS  D FVCN+L+DMY KCGS+ S +KV
Sbjct: 544 DKYTFVSILSLCSKLCDLTLGSSIHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVMKV 603

Query: 233 FNEMPKKNLFSWTALISALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSACRHXXXX 54
           F E  +KNL +WTALIS LG+HG+   ALE+F+E  S+G KPDRV+FI++L+ACRH    
Sbjct: 604 FEETREKNLITWTALISCLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMV 663

Query: 53  XXXXXLFGRMKGYNVEP 3
                LF +MK Y VEP
Sbjct: 664 KEGMGLFQKMKDYGVEP 680



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 39/111 (35%), Positives = 59/111 (53%)
 Frame = -1

Query: 404 TLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNE 225
           T VS+L +S+ +  L+ G  IHG +IK N     + + N L+D YAKCG++E S   F+ 
Sbjct: 318 TYVSVLGVSSLVQLLSCGRQIHGMLIK-NGCETGIVLGNALIDFYAKCGNLEDSRLCFDY 376

Query: 224 MPKKNLFSWTALISALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSAC 72
           +  KN+  W AL+S       P + L  F +M  +G +P    F   L +C
Sbjct: 377 IRDKNIVCWNALLSGYANKDGP-ICLSLFLQMLQMGFRPTEYTFSTALKSC 426



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 34/108 (31%), Positives = 57/108 (52%)
 Frame = -1

Query: 404 TLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNE 225
           T+  LLS ++   D+  G+ +HG  +K      D FV   L+ +Y +   +E + +VF +
Sbjct: 117 TVSGLLSCAS--LDVRAGTQLHGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQVFED 174

Query: 224 MPKKNLFSWTALISALGLHGFPCVALERFREMESVGIKPDRVAFIAVL 81
           MP K+L +W  ++S LG  GF    +  FRE+  +G      +F+ VL
Sbjct: 175 MPFKSLETWNHMMSLLGHRGFLKECMFFFRELVRMGASLTESSFLGVL 222


>dbj|BAF01499.1| hypothetical protein [Arabidopsis thaliana]
          Length = 741

 Score =  164 bits (415), Expect = 7e-39
 Identities = 78/137 (56%), Positives = 101/137 (73%)
 Frame = -1

Query: 413 DNYTLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKV 234
           D YT VS+LS+ ++LCDL LGS+IHG + K +FS  D FVCN+L+DMY KCGS+ S +KV
Sbjct: 544 DKYTFVSILSLCSKLCDLTLGSSIHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVMKV 603

Query: 233 FNEMPKKNLFSWTALISALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSACRHXXXX 54
           F E  +KNL +WTALIS LG+HG+   ALE+F+E  S+G KPDRV+FI++L+ACRH    
Sbjct: 604 FEETREKNLITWTALISCLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMV 663

Query: 53  XXXXXLFGRMKGYNVEP 3
                LF +MK Y VEP
Sbjct: 664 KEGMGLFQKMKDYGVEP 680



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 39/111 (35%), Positives = 59/111 (53%)
 Frame = -1

Query: 404 TLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNE 225
           T VS+L +S+ +  L+ G  IHG +IK N     + + N L+D YAKCG++E S   F+ 
Sbjct: 318 TYVSVLGVSSLVQLLSCGRQIHGMLIK-NGCETGIVLGNALIDFYAKCGNLEDSRLCFDY 376

Query: 224 MPKKNLFSWTALISALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSAC 72
           +  KN+  W AL+S       P + L  F +M  +G +P    F   L +C
Sbjct: 377 IRDKNIVCWNALLSGYANKDGP-ICLSLFLQMLQMGFRPTEYTFSTALKSC 426



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 34/108 (31%), Positives = 57/108 (52%)
 Frame = -1

Query: 404 TLVSLLSISTRLCDLALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNE 225
           T+  LLS ++   D+  G+ +HG  +K      D FV   L+ +Y +   +E + +VF +
Sbjct: 117 TVSGLLSCAS--LDVRAGTQLHGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQVFED 174

Query: 224 MPKKNLFSWTALISALGLHGFPCVALERFREMESVGIKPDRVAFIAVL 81
           MP K+L +W  ++S LG  GF    +  FRE+  +G      +F+ VL
Sbjct: 175 MPFKSLETWNHMMSLLGHRGFLKECMFFFRELVRMGASLTESSFLGVL 222