BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019732
         (207 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago t...    57   2e-06
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...    55   8e-06
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...    55   8e-06

>ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
           gi|355491246|gb|AES72449.1| RNA polymerase sigma factor
           rpoD [Medicago truncatula]
          Length = 514

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/35 (74%), Positives = 29/35 (82%)
 Frame = +1

Query: 103 VSLHKRHATTQEEFINGITDVGGVCGNRRRQPALL 207
           +SLH RH TTQEEFING+ D GGV G+ RRQPALL
Sbjct: 408 LSLHSRHLTTQEEFINGVVDDGGVDGDNRRQPALL 442


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 501

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/36 (75%), Positives = 30/36 (83%)
 Frame = +1

Query: 100 AVSLHKRHATTQEEFINGITDVGGVCGNRRRQPALL 207
           A+SLH RHA TQEEFINGITD+ G  G+ RRQPALL
Sbjct: 396 ALSLHARHAVTQEEFINGITDIDG--GDNRRQPALL 429


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|302143685|emb|CBI22546.3| unnamed protein product
           [Vitis vinifera]
          Length = 518

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = +1

Query: 103 VSLHKRHATTQEEFINGITDVGGVCGNRRRQPALL 207
           +SLH RHATTQEE+INGITDV GV G+R RQ ALL
Sbjct: 412 LSLHARHATTQEEYINGITDVEGVGGDRGRQLALL 446