BLASTX nr result
ID: Coptis24_contig00019732
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00019732 (207 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago t... 57 2e-06 ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [... 55 8e-06 ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ... 55 8e-06 >ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago truncatula] gi|355491246|gb|AES72449.1| RNA polymerase sigma factor rpoD [Medicago truncatula] Length = 514 Score = 57.0 bits (136), Expect = 2e-06 Identities = 26/35 (74%), Positives = 29/35 (82%) Frame = +1 Query: 103 VSLHKRHATTQEEFINGITDVGGVCGNRRRQPALL 207 +SLH RH TTQEEFING+ D GGV G+ RRQPALL Sbjct: 408 LSLHSRHLTTQEEFINGVVDDGGVDGDNRRQPALL 442 >ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] Length = 501 Score = 54.7 bits (130), Expect = 8e-06 Identities = 27/36 (75%), Positives = 30/36 (83%) Frame = +1 Query: 100 AVSLHKRHATTQEEFINGITDVGGVCGNRRRQPALL 207 A+SLH RHA TQEEFINGITD+ G G+ RRQPALL Sbjct: 396 ALSLHARHAVTQEEFINGITDIDG--GDNRRQPALL 429 >ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera] gi|302143685|emb|CBI22546.3| unnamed protein product [Vitis vinifera] Length = 518 Score = 54.7 bits (130), Expect = 8e-06 Identities = 27/35 (77%), Positives = 30/35 (85%) Frame = +1 Query: 103 VSLHKRHATTQEEFINGITDVGGVCGNRRRQPALL 207 +SLH RHATTQEE+INGITDV GV G+R RQ ALL Sbjct: 412 LSLHARHATTQEEYINGITDVEGVGGDRGRQLALL 446