BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019723
         (1051 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...    70   5e-16
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]    69   8e-16
emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera]    69   2e-15
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...    64   9e-14
ref|XP_003577043.1| PREDICTED: LOW QUALITY PROTEIN: putative F-b...    67   4e-12

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score = 69.7 bits (169), Expect(2) = 5e-16
 Identities = 74/266 (27%), Positives = 112/266 (42%), Gaps = 9/266 (3%)
 Frame = -1

Query: 778 FFSLCDGKIYKADIPELTNRRICGSFQGGWLMTVHQNYEVQLFNPFSTSLVCLPPLTEFP 599
           FFSL   K +   +PE ++RR       GWL+ + +  E+ L NP + S V LPPL+ FP
Sbjct: 67  FFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLTRSKVHLPPLSTFP 126

Query: 598 GV---------QGILLRKKKGEVPNLVYSFTRLSCVRDMFIHSYLSLSCMRDMSIYRVVM 446
            V         +   LR   G+V      +TR             SL  MRD  I + ++
Sbjct: 127 NVVRFNFADVGREYALRTSSGDV------YTR-------------SLKKMRDSFIKKTIL 167

Query: 445 SSSSVTSGAIIMAIQGIHRTLAFYRIGGDQESWTPVTLDKNSRFFRDVTYYQGNFXXXXX 266
           SSS   +G+  +A+  +++T          +SWT   L+    +  DV +++G F     
Sbjct: 168 SSSP-ANGSDFIAVVILNQTGDLALCRKSDDSWT--FLEDAQSYAEDVIFHRGLF----- 219

Query: 265 XXXXXXXRGLXXXXXXXXXXXEQIISEPPGRVDVDQQSYILESSGDLLIVLRNIVQDKDR 86
                   G               I E P +   D Q Y++ES  +LL+V R +    D 
Sbjct: 220 --YAVNKYGSIAVCDVSGSSPRVSIIEMPQQFGGDLQ-YLVESGEELLLVTRYLDLTYDV 276

Query: 85  NTDNKLQIPPLKTVGFQVYKLDFGSP 8
             D    I   +T  FQV +LD  +P
Sbjct: 277 EPDQTSLI--YRTTRFQVCRLDLKAP 300



 Score = 41.6 bits (96), Expect(2) = 5e-16
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -3

Query: 953 MEGWLTLPDHMLDLIVERLS-FPDLIRFGCVCKKWRSLC--GPLQFPNHLPWLIVPHQR 786
           M  W  L   +LD I ++   + D +RF  VC  WR+     P   P  LPWL++P  +
Sbjct: 1   MADWSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRASVPKTPHHLPTQLPWLMLPQSQ 59


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score = 68.9 bits (167), Expect(2) = 8e-16
 Identities = 74/266 (27%), Positives = 112/266 (42%), Gaps = 9/266 (3%)
 Frame = -1

Query: 778 FFSLCDGKIYKADIPELTNRRICGSFQGGWLMTVHQNYEVQLFNPFSTSLVCLPPLTEFP 599
           FFSL   K +   +PE ++RR       GWL+ + +  E+ L NP + S V LPPL+ FP
Sbjct: 67  FFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLTRSKVHLPPLSTFP 126

Query: 598 GV---------QGILLRKKKGEVPNLVYSFTRLSCVRDMFIHSYLSLSCMRDMSIYRVVM 446
            V         +   LR   G+V      +TR             SL  MRD  I + ++
Sbjct: 127 NVVRFNFADVGREYALRTSSGDV------YTR-------------SLKKMRDSFIKKTIL 167

Query: 445 SSSSVTSGAIIMAIQGIHRTLAFYRIGGDQESWTPVTLDKNSRFFRDVTYYQGNFXXXXX 266
           SSS   +G+  +A+  +++T          +SWT   L+    +  DV +++G F     
Sbjct: 168 SSSP-ANGSDFIAVVILNQTGDLALCRKSDDSWT--FLEDAQSYSEDVIFHRGLF----- 219

Query: 265 XXXXXXXRGLXXXXXXXXXXXEQIISEPPGRVDVDQQSYILESSGDLLIVLRNIVQDKDR 86
                   G               I E P +   D Q Y++ES  +LL+V R +    D 
Sbjct: 220 --YAVNKYGSIAVCDVSGSSPRVSIIEMPQQFGGDLQ-YLVESGEELLLVTRYLDLTYDV 276

Query: 85  NTDNKLQIPPLKTVGFQVYKLDFGSP 8
             D    I   +T  FQV +LD  +P
Sbjct: 277 EXDQTSLI--YRTTRFQVCRLDSKAP 300



 Score = 41.6 bits (96), Expect(2) = 8e-16
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -3

Query: 953 MEGWLTLPDHMLDLIVERLS-FPDLIRFGCVCKKWRSLC--GPLQFPNHLPWLIVPHQR 786
           M  W  L   +LD I ++   + D +RF  VC  WR+     P   P  LPWL++P  +
Sbjct: 1   MADWSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRASVPKTPHHLPTQLPWLMLPQSQ 59


>emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera]
          Length = 1290

 Score = 68.6 bits (166), Expect(2) = 2e-15
 Identities = 67/261 (25%), Positives = 110/261 (42%), Gaps = 8/261 (3%)
 Frame = -1

Query: 778  FFSLCDGKIYKADIPELTNRRICGSFQGGWLMTVHQNYEVQLFNPFSTSLVCLPPLTEFP 599
            F+S   GK+Y+  +PE+  +   GS   GWL+T+  + ++ L NP +   + LP L   P
Sbjct: 985  FYSPLSGKVYEIRLPEVVGKWCWGS-PYGWLVTIGTDLDMCLLNPLTRVQILLPSLRACP 1043

Query: 598  GVQGILLRKKKGEVPNLVYSFTRLSCVRDMFIHSYLSLSCMRDMSIYRVVMSSSSVTSGA 419
             +              L+ S T+ S  +D+F              IY+ V+SS+  +   
Sbjct: 1044 NLN------------TLIDSSTQGSRSKDIF--------------IYKAVLSSAPSSPDC 1077

Query: 418  IIMAIQGIHRTLAFYRIGGDQESWTPVTLDKNSRFFRDVTYYQGNFXXXXXXXXXXXXRG 239
             +M I   +  LAF + G   ++WT   L+  S    D+ Y+ G+F              
Sbjct: 1078 AVMIIYSDYGRLAFTKPG--HQTWT--LLESESGPVDDIIYFNGSF----------LAVN 1123

Query: 238  LXXXXXXXXXXXEQI----ISEPPGRVDVD----QQSYILESSGDLLIVLRNIVQDKDRN 83
            L            Q+     +  P   DVD    +  Y++ES G++ +V RN+     R+
Sbjct: 1124 LSWEVWICDISGSQLKTIRFAAAPALQDVDEIEYEAKYLVESGGEIYMVTRNLYDTARRD 1183

Query: 82   TDNKLQIPPLKTVGFQVYKLD 20
                  IP ++T  F V KLD
Sbjct: 1184 ------IPYMRTWTFSVLKLD 1198



 Score = 40.4 bits (93), Expect(2) = 2e-15
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = -3

Query: 953  MEGWLTLPDHMLDLIVERL-SFPDLIRFGCVCKKWRSL------CGPLQFPNHLPWLIV 798
            M  W  +PD  L LI E+L S  D +RFG VCK W S+      C P    +  PWL++
Sbjct: 919  MADWSKMPDDPLKLIAEKLHSVEDYVRFGGVCKSWYSIFEDKECCCP---SSKSPWLML 974


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
           predicted protein [Populus trichocarpa]
          Length = 393

 Score = 63.5 bits (153), Expect(2) = 9e-14
 Identities = 73/262 (27%), Positives = 111/262 (42%), Gaps = 5/262 (1%)
 Frame = -1

Query: 778 FFSLCDGKIYKADIPELTNRRI-CGSFQGGWLMTVHQNYEVQLFNPFSTSLVCLPPLTEF 602
           FF+L   K +  ++PE ++R+  CGS  G WL+ +  +  + + NP +   + LP ++ F
Sbjct: 69  FFNLSTYKFHSLNLPEASHRKKHCGSSHG-WLIILDDSPSILVINPLTRRKIHLPAISSF 127

Query: 601 PGVQGILLRKKKGEVPNLVYSFTRLSCVRDMFIHSYLSLSCMRDMSIYRVVMSSSSVTSG 422
           P V          +  N+   +     V      +  SL  MRD  I +VVMSSS +   
Sbjct: 128 PNVVSF-------DYANVGREYL---LVNPQGERNTASLRQMRDGFIKKVVMSSSPLEKK 177

Query: 421 A---IIMAIQGIHRTLAFYRIGGDQESWTPVTLDKNSR-FFRDVTYYQGNFXXXXXXXXX 254
               + MAI      LA+ + G   E W  V   +NSR F  DV Y+ G F         
Sbjct: 178 GDFFVAMAILCSTGDLAYCKNG--DECWNIV---ENSRSFSEDVIYFNGLF-------YA 225

Query: 253 XXXRGLXXXXXXXXXXXEQIISEPPGRVDVDQQSYILESSGDLLIVLRNIVQDKDRNTDN 74
               G            +    E P ++  D Q Y++ S   LL+V R +      + D 
Sbjct: 226 VNKAGQIVVCDVNGNSPKVSFIETPRQIGGDMQ-YLVSSGDGLLLVTRYL------DLDV 278

Query: 73  KLQIPPLKTVGFQVYKLDFGSP 8
           +  I   KT  F+V+KLD   P
Sbjct: 279 EFDIFIYKTARFEVFKLDLNGP 300



 Score = 40.0 bits (92), Expect(2) = 9e-14
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 944 WLTLPDHMLDLIVERLS-FPDLIRFGCVCKKWRSLC--GPLQFPNHLPWLIVPHQR 786
           W  LP  ++++I ++++ + D + F  VC  W+S     P   P  LPWL++P  +
Sbjct: 5   WTQLPPELIEIISKKITIYSDYLHFQAVCHAWKSSIPKTPNHLPPQLPWLLLPQSQ 60


>ref|XP_003577043.1| PREDICTED: LOW QUALITY PROTEIN: putative F-box protein
           At1g65770-like [Brachypodium distachyon]
          Length = 417

 Score = 66.6 bits (161), Expect(2) = 4e-12
 Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 2/257 (0%)
 Frame = -1

Query: 781 DFFSLCDGKIYKADIPE--LTNRRICGSFQGGWLMTVHQNYEVQLFNPFSTSLVCLPPLT 608
           + FSL D   YK  +P+  +  R I GS  G WL+T     E+ L NP +   V LPP+ 
Sbjct: 83  ELFSLADKNTYKMRLPDPPIGERNIVGSSHG-WLVTADGRSELLLLNPVTGEQVALPPVA 141

Query: 607 EFPGVQGILLRKKKGEVPNLVYSFTRLSCVRDMFIHSYLSLSCMRDMSIYRVVMSSSSVT 428
               V  +    + GE+      F   + +R+       ++  +RD    +VV+S     
Sbjct: 142 TVEQVNPVF--NQAGELERYDLYFYDSTPIRETEEPHDHAVDELRDALYLKVVLSCDPSQ 199

Query: 427 SGAIIMAIQGIHRTLAFYRIGGDQESWTPVTLDKNSRFFRDVTYYQGNFXXXXXXXXXXX 248
              I M I   +R L+F R+G ++ +W  VT    S  + D  +++G F           
Sbjct: 200 GDCIAMMIHNPYRQLSFARVGDNKWAW--VTSSVQSSEYSDCIFHEGAF------YAMSL 251

Query: 247 XRGLXXXXXXXXXXXEQIISEPPGRVDVDQQSYILESSGDLLIVLRNIVQDKDRNTDNKL 68
             G+             +I +               SSG++L + R         + ++ 
Sbjct: 252 LGGIHRYTIEGSCATLDVIFKDTSPFIAHNTYISRTSSGEVLQIWR-------LTSCSRG 304

Query: 67  QIPPLKTVGFQVYKLDF 17
           ++  L+T G ++YK+DF
Sbjct: 305 ELHDLETTGIEIYKVDF 321



 Score = 31.6 bits (70), Expect(2) = 4e-12
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 956 PMEGWLTLPDHMLDLIVERLSFPDLIRFGCVCKKW 852
           P   W +LP  +L  ++  L FPDL +   VC  W
Sbjct: 22  PDPDWSSLPADLLANVLGELEFPDLFQSAVVCTTW 56