BLASTX nr result
ID: Coptis24_contig00019663
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00019663
(1328 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002510612.1| conserved hypothetical protein [Ricinus comm... 72 2e-28
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ... 73 6e-22
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] 70 5e-21
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2... 73 2e-19
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ... 70 3e-19
>ref|XP_002510612.1| conserved hypothetical protein [Ricinus communis]
gi|223551313|gb|EEF52799.1| conserved hypothetical
protein [Ricinus communis]
Length = 402
Score = 72.4 bits (176), Expect(4) = 2e-28
Identities = 41/93 (44%), Positives = 57/93 (61%)
Frame = +3
Query: 783 ELLLAAKYIRIIQDEPGYKTERFEVYKITFNKKEWEEVKDLGQHLLFLGFNTSVSMLASD 962
ELL+ +Y +++ D YKTERFE+YK+ + W++ + LG +LFLG N S+S+ A D
Sbjct: 263 ELLIVCRYRKVVPDYE-YKTERFEIYKL--DDGGWKKKESLGDKMLFLGGNGSLSISALD 319
Query: 963 TSTFRRNCIYFTDDNATEYIGTDKDRCNDMIWE 1061
S + NCIYFTDD YI C D +WE
Sbjct: 320 YSKCKGNCIYFTDD----YIRL----CKDYVWE 344
Score = 48.5 bits (114), Expect(4) = 2e-28
Identities = 26/82 (31%), Positives = 43/82 (52%)
Frame = +2
Query: 422 IRTSFLRKAILSYTPSFNTTYLEDGVVAMVIYGFQRKLAIARPGDNSWSPIQTRIPAVAA 601
IR +F+ KAILS PS +T ++ A+VIYG LA R GD +W+ I
Sbjct: 153 IRDTFIVKAILSSDPSLDTNFM-----AVVIYGVNENLAFCRSGDAAWTVIDETTSPPRR 207
Query: 602 VDDVIYFKNQFYNVNRCGKVAV 667
D ++ + + V++ G +++
Sbjct: 208 YKDALFRAGKLFAVDQTGGISI 229
Score = 47.0 bits (110), Expect(4) = 2e-28
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = +3
Query: 21 WSEVEEDILVPIS-KHLPTVPTAVDYFAK-----SWKSITTSNPFNLLIPQPPFLMLAEE 182
W+E+ ++L I+ KH VDY SW+S P N L+ Q PFL+L
Sbjct: 5 WAELPPELLQVIADKHT----NYVDYLVTRAVCGSWQSAIAKRPHNHLLCQLPFLLLPYY 60
Query: 183 KGVAPRRGFVGLNSCDKVYKLHLPELHQR 269
+ RRGF + S DK+Y L LPE +++
Sbjct: 61 QNNPDRRGFYNI-SDDKIYVLELPEAYEK 88
Score = 25.4 bits (54), Expect(4) = 2e-28
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 268 GSTGNWLITIRT*KHIFSINPITMD 342
GS+ WLI + IF +NP+T +
Sbjct: 92 GSSHGWLIMVEDSPSIFLLNPLTRE 116
>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
Length = 389
Score = 72.8 bits (177), Expect(3) = 6e-22
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 15/139 (10%)
Frame = +3
Query: 666 YVTMSVCDIYCNSPQAT------QVSGDFKCACRVTKYYLVEWLGELLLAAKYIRIIQD- 824
Y +++VCD+ +SP+ + Q GD + YLVE ELLL +Y+ + D
Sbjct: 225 YGSIAVCDVSGSSPRVSIIEMPQQFGGDLQ--------YLVESGEELLLVTRYLDLTYDV 276
Query: 825 EPG-----YKTERFEVYKITFNKKEWEEVKDLGQHLLFLGFNTSVSMLASDTSTFRRNCI 989
EP Y+T RF+V ++ WE V LG LFLG N S+S+ + D + NCI
Sbjct: 277 EPDQTSLIYRTTRFQVCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCI 336
Query: 990 YFTDDNATEY---IGTDKD 1037
Y+TDD + + IG ++D
Sbjct: 337 YYTDDYSEDNYDGIGGEQD 355
Score = 53.5 bits (127), Expect(3) = 6e-22
Identities = 29/87 (33%), Positives = 52/87 (59%)
Frame = +2
Query: 410 TIESIRTSFLRKAILSYTPSFNTTYLEDGVVAMVIYGFQRKLAIARPGDNSWSPIQTRIP 589
+++ +R SF++K ILS +P+ + + +A+VI LA+ R D+SW+ ++
Sbjct: 153 SLKKMRDSFIKKTILSSSPANGSDF-----IAVVILNQTGDLALCRKSDDSWTFLED--- 204
Query: 590 AVAAVDDVIYFKNQFYNVNRCGKVAVC 670
A + +DVI+ + FY VN+ G +AVC
Sbjct: 205 AQSYAEDVIFHRGLFYAVNKYGSIAVC 231
Score = 25.4 bits (54), Expect(3) = 6e-22
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 265 RGSTGNWLITIRT*KHIFSINPIT 336
RGS+ WL+ + IF +NP+T
Sbjct: 90 RGSSHGWLLILDEAPEIFLLNPLT 113
>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
Length = 389
Score = 70.5 bits (171), Expect(3) = 5e-21
Identities = 47/139 (33%), Positives = 71/139 (51%), Gaps = 15/139 (10%)
Frame = +3
Query: 666 YVTMSVCDIYCNSPQAT------QVSGDFKCACRVTKYYLVEWLGELLLAAKYIRIIQDE 827
Y +++VCD+ +SP+ + Q GD + YLVE ELLL +Y+ + D
Sbjct: 225 YGSIAVCDVSGSSPRVSIIEMPQQFGGDLQ--------YLVESGEELLLVTRYLDLTYDV 276
Query: 828 PG------YKTERFEVYKITFNKKEWEEVKDLGQHLLFLGFNTSVSMLASDTSTFRRNCI 989
Y+T RF+V ++ WE V LG LFLG N S+S+ + D + NCI
Sbjct: 277 EXDQTSLIYRTTRFQVCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCI 336
Query: 990 YFTDDNATEY---IGTDKD 1037
Y+TDD + + IG ++D
Sbjct: 337 YYTDDYSEDNYDGIGGEQD 355
Score = 52.8 bits (125), Expect(3) = 5e-21
Identities = 29/87 (33%), Positives = 52/87 (59%)
Frame = +2
Query: 410 TIESIRTSFLRKAILSYTPSFNTTYLEDGVVAMVIYGFQRKLAIARPGDNSWSPIQTRIP 589
+++ +R SF++K ILS +P+ + + +A+VI LA+ R D+SW+ ++
Sbjct: 153 SLKKMRDSFIKKTILSSSPANGSDF-----IAVVILNQTGDLALCRKSDDSWTFLED--- 204
Query: 590 AVAAVDDVIYFKNQFYNVNRCGKVAVC 670
A + +DVI+ + FY VN+ G +AVC
Sbjct: 205 AQSYSEDVIFHRGLFYAVNKYGSIAVC 231
Score = 25.4 bits (54), Expect(3) = 5e-21
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 265 RGSTGNWLITIRT*KHIFSINPIT 336
RGS+ WL+ + IF +NP+T
Sbjct: 90 RGSSHGWLLILDEAPEIFLLNPLT 113
>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
predicted protein [Populus trichocarpa]
Length = 393
Score = 73.2 bits (178), Expect(3) = 2e-19
Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 9/124 (7%)
Frame = +3
Query: 681 VCDIYCNSPQAT------QVSGDFKCACRVTKYYLVEWLGELLLAAKYIRIIQ--DEPGY 836
VCD+ NSP+ + Q+ GD + YLV LLL +Y+ + D Y
Sbjct: 234 VCDVNGNSPKVSFIETPRQIGGDMQ--------YLVSSGDGLLLVTRYLDLDVEFDIFIY 285
Query: 837 KTERFEVYKITFNKKEWEEVKDLGQHLLFLGFNTSVSMLASDTSTFRRNCIYFTDD-NAT 1013
KT RFEV+K+ N WE V LG +LF+G N+S+++ AS S +CIY+TDD +A
Sbjct: 286 KTARFEVFKLDLNGPRWERVTSLGDMMLFIGENSSLALSASGLSGCMGDCIYYTDDYSAN 345
Query: 1014 EYIG 1025
Y G
Sbjct: 346 NYDG 349
Score = 47.4 bits (111), Expect(3) = 2e-19
Identities = 27/87 (31%), Positives = 45/87 (51%)
Frame = +2
Query: 410 TIESIRTSFLRKAILSYTPSFNTTYLEDGVVAMVIYGFQRKLAIARPGDNSWSPIQTRIP 589
++ +R F++K ++S +P D VAM I LA + GD W+ ++
Sbjct: 155 SLRQMRDGFIKKVVMSSSPLEKKG---DFFVAMAILCSTGDLAYCKNGDECWNIVEN--- 208
Query: 590 AVAAVDDVIYFKNQFYNVNRCGKVAVC 670
+ + +DVIYF FY VN+ G++ VC
Sbjct: 209 SRSFSEDVIYFNGLFYAVNKAGQIVVC 235
Score = 22.3 bits (46), Expect(3) = 2e-19
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 268 GSTGNWLITIRT*KHIFSINPIT 336
GS+ WLI + I INP+T
Sbjct: 93 GSSHGWLIILDDSPSILVINPLT 115
>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 398
Score = 70.1 bits (170), Expect(3) = 3e-19
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Frame = +3
Query: 681 VCDIYCNSPQAT------QVSGDFKCACRVTKYYLVEWLGELLLAAKYIRIIQD------ 824
+CDI +SP+ + Q GD + YLV ELLL +Y+ + +
Sbjct: 233 ICDISSDSPRVSFMETPRQAGGDMQ--------YLVNSGDELLLVTRYLDLEYEFDHPDM 284
Query: 825 EPG--YKTERFEVYKITFNKKEWEEVKDLGQHLLFLGFNTSVSMLASDTSTFRRNCIYFT 998
EP Y+T RFEV+++ +N +W + LG LF+G N+S+S+ A+D S NCIY+T
Sbjct: 285 EPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSLSATDFSGCMGNCIYYT 344
Query: 999 DD 1004
DD
Sbjct: 345 DD 346
Score = 51.6 bits (122), Expect(3) = 3e-19
Identities = 28/87 (32%), Positives = 46/87 (52%)
Frame = +2
Query: 410 TIESIRTSFLRKAILSYTPSFNTTYLEDGVVAMVIYGFQRKLAIARPGDNSWSPIQTRIP 589
++ +R SF+RK +LS +P + + V + I LA R GD SWS ++
Sbjct: 156 SLRQMRDSFIRKVVLSSSPLKDNNF-----VVIAILNQTDDLAYCRNGDKSWSLVEN--- 207
Query: 590 AVAAVDDVIYFKNQFYNVNRCGKVAVC 670
A + +DVI+ FY VN+ G++ +C
Sbjct: 208 ARSFCEDVIFVNGMFYAVNKAGQIVIC 234
Score = 20.8 bits (42), Expect(3) = 3e-19
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 268 GSTGNWLITIRT*KHIFSINPIT 336
GS+ WL+ + I INP+T
Sbjct: 94 GSSHGWLMILDDTPTILLINPLT 116