BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019626
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ric...   162   2e-38
ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis t...   156   1e-36
emb|CAA16524.1| DNA topoisomerase like-protein [Arabidopsis thal...   156   1e-36
ref|XP_002869340.1| DNA topoisomerase family protein [Arabidopsi...   151   6e-35
ref|XP_004163506.1| PREDICTED: DNA topoisomerase 1-like [Cucumis...   150   1e-34

>ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
            gi|223532629|gb|EEF34415.1| prokaryotic DNA
            topoisomerase, putative [Ricinus communis]
          Length = 1071

 Score =  162 bits (411), Expect = 2e-38
 Identities = 74/113 (65%), Positives = 94/113 (83%)
 Frame = +1

Query: 4    EEEDEDPKKMNIVSEPKLLGLHPSSNEKILLKNGPYGCYIQLGDDRKGYSPKRASVGQVK 183
            ++EDE+  + N V EPKLLG+HP S EK+LLKNGPYG Y+QLG+DRKGY+PKRASV  +K
Sbjct: 920  DDEDEETPQNNSVEEPKLLGVHPVSTEKVLLKNGPYGFYLQLGEDRKGYTPKRASVSHIK 979

Query: 184  NVDSITLEQALDWLQYPVLLGNHLEDGGPVYLKISKFGFTIRHKRTIAPVPKN 342
            +VD+ITLE AL+ L+YPV LGNH +DG P+ LK++K GF +RH+RTIA VPKN
Sbjct: 980  DVDNITLEDALELLRYPVTLGNHPKDGHPIILKLAKVGFAVRHRRTIASVPKN 1032


>ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis thaliana]
            gi|332660478|gb|AEE85878.1| DNA topoisomerase, type IA,
            core [Arabidopsis thaliana]
          Length = 1284

 Score =  156 bits (395), Expect = 1e-36
 Identities = 70/114 (61%), Positives = 95/114 (83%)
 Frame = +1

Query: 1    EEEEDEDPKKMNIVSEPKLLGLHPSSNEKILLKNGPYGCYIQLGDDRKGYSPKRASVGQV 180
            E+E+++DP K N V EPKLLGLHP+++EK++LK GPYG Y+QLG+D+KG++PKRA+   +
Sbjct: 1126 EDEDEDDPPKNNCVEEPKLLGLHPNTSEKVILKCGPYGHYVQLGEDKKGHTPKRANAAHI 1185

Query: 181  KNVDSITLEQALDWLQYPVLLGNHLEDGGPVYLKISKFGFTIRHKRTIAPVPKN 342
            K+V+SITLE AL+ L+YP+ LG H EDG PV LK+SK GFTI+H+R +A VPKN
Sbjct: 1186 KDVNSITLESALELLRYPLTLGTHPEDGQPVVLKLSKSGFTIKHRRNMATVPKN 1239


>emb|CAA16524.1| DNA topoisomerase like-protein [Arabidopsis thaliana]
            gi|7270023|emb|CAB79839.1| DNA topoisomerase like-protein
            [Arabidopsis thaliana]
          Length = 1179

 Score =  156 bits (395), Expect = 1e-36
 Identities = 70/114 (61%), Positives = 95/114 (83%)
 Frame = +1

Query: 1    EEEEDEDPKKMNIVSEPKLLGLHPSSNEKILLKNGPYGCYIQLGDDRKGYSPKRASVGQV 180
            E+E+++DP K N V EPKLLGLHP+++EK++LK GPYG Y+QLG+D+KG++PKRA+   +
Sbjct: 1021 EDEDEDDPPKNNCVEEPKLLGLHPNTSEKVILKCGPYGHYVQLGEDKKGHTPKRANAAHI 1080

Query: 181  KNVDSITLEQALDWLQYPVLLGNHLEDGGPVYLKISKFGFTIRHKRTIAPVPKN 342
            K+V+SITLE AL+ L+YP+ LG H EDG PV LK+SK GFTI+H+R +A VPKN
Sbjct: 1081 KDVNSITLESALELLRYPLTLGTHPEDGQPVVLKLSKSGFTIKHRRNMATVPKN 1134


>ref|XP_002869340.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297315176|gb|EFH45599.1| DNA topoisomerase family
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1325

 Score =  151 bits (381), Expect = 6e-35
 Identities = 68/114 (59%), Positives = 94/114 (82%)
 Frame = +1

Query: 1    EEEEDEDPKKMNIVSEPKLLGLHPSSNEKILLKNGPYGCYIQLGDDRKGYSPKRASVGQV 180
            E+E+++DP K   V EPKLLGLHP+++EK++LK GPYG Y+QLG+D+KG++PKRA+   +
Sbjct: 1167 EDEDEDDPPKNTCVEEPKLLGLHPNTSEKVILKCGPYGHYVQLGEDKKGHTPKRANAAHI 1226

Query: 181  KNVDSITLEQALDWLQYPVLLGNHLEDGGPVYLKISKFGFTIRHKRTIAPVPKN 342
            K+V+SITLE AL+ L+YP+ LGNH  DG PV L++SK GFTI+H+ T+A VPKN
Sbjct: 1227 KDVNSITLESALELLRYPLTLGNHPIDGQPVVLRLSKSGFTIKHRCTMATVPKN 1280


>ref|XP_004163506.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus]
          Length = 415

 Score =  150 bits (379), Expect = 1e-34
 Identities = 71/115 (61%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
 Frame = +1

Query: 1   EEEEDEDPKKM-NIVSEPKLLGLHPSSNEKILLKNGPYGCYIQLGDDRKGYSPKRASVGQ 177
           +E++D+DP ++ N   EPK+LGLHP   EK+LLK GP+GCYIQLG+DRKGY PKRASV +
Sbjct: 263 DEDKDKDPSEIDNGGVEPKVLGLHPVLKEKVLLKTGPFGCYIQLGEDRKGYMPKRASVFE 322

Query: 178 VKNVDSITLEQALDWLQYPVLLGNHLEDGGPVYLKISKFGFTIRHKRTIAPVPKN 342
           +K+V+SITL+ A+D L+YP+ LG H +DG PV +KI++ GFTIRH RTIA +PKN
Sbjct: 323 IKDVNSITLDFAIDRLRYPITLGKHPKDGQPVIIKIARTGFTIRHGRTIASIPKN 377