BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019575
         (300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               45   4e-09
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]            44   6e-08
emb|CAN70817.1| hypothetical protein VITISV_029336 [Vitis vinifera]    42   1e-06
gb|AAU90288.2| Polyprotein, putative [Solanum demissum]                42   5e-06
emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]    38   6e-06

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 45.4 bits (106), Expect(2) = 4e-09
 Identities = 20/34 (58%), Positives = 27/34 (79%)
 Frame = +2

Query: 194  PPEINIYIVPNKWVFKLKLKSDGSIEQSKACLVA 295
            PP   + I+PNKWVF++K +SDGS+E+ KA LVA
Sbjct: 907  PPSSLMNILPNKWVFRIKKRSDGSVERYKARLVA 940



 Score = 40.0 bits (92), Expect(2) = 4e-09
 Identities = 15/39 (38%), Positives = 27/39 (69%)
 Frame = +3

Query: 57  HVLAAQLTSSTVEPTCYSQAVRFPEWRKAMTDDRSSEEQ 173
           + + + L +  +EPTCY+QA ++PEWR+AM  +  + +Q
Sbjct: 861 YAMHSTLLALPLEPTCYTQAAKYPEWREAMDHEFKALQQ 899


>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
          Length = 1087

 Score = 43.9 bits (102), Expect(2) = 6e-08
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +2

Query: 194 PPEINIYIVPNKWVFKLKLKSDGSIEQSKACLVAK 298
           P  I  YI+  KWVFK+K KSDG+I++ KA LVAK
Sbjct: 671 PAPIGKYIIDCKWVFKIKRKSDGTIDRYKARLVAK 705



 Score = 37.7 bits (86), Expect(2) = 6e-08
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 6   IHRPKVRTNGTIRYLFPHVLAAQLTSSTVEPTCYSQAVRFPEWRKAMTDD 155
           I +P  RT+GTIR+          + S  EPTC+  A+    W+KAM ++
Sbjct: 615 IRKPLTRTDGTIRW-------GMYSGSDKEPTCFDDALADENWKKAMDEE 657


>emb|CAN70817.1| hypothetical protein VITISV_029336 [Vitis vinifera]
          Length = 1044

 Score = 42.4 bits (98), Expect(2) = 1e-06
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +2

Query: 194 PPEINIYIVPNKWVFKLKLKSDGSIEQSKACLVAK 298
           PP IN + V  KWVF++K K DGS+++ KA LVAK
Sbjct: 555 PPPINCHPVGCKWVFRVKRKVDGSVDKFKARLVAK 589



 Score = 35.0 bits (79), Expect(2) = 1e-06
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 9   HRPKVRTNGTIRYLFP----HVLAAQLTSSTVEPTCYSQAVRFPEWRKAMTDD 155
           HR    T  ++  +F     H ++       +EPTC +QAV  PEW +AM+ +
Sbjct: 489 HRTHSMTTRSMNNIFKPKQLHTVSKHYLPLPLEPTCVTQAVSHPEWXEAMSSE 541


>gb|AAU90288.2| Polyprotein, putative [Solanum demissum]
          Length = 1017

 Score = 41.6 bits (96), Expect(2) = 5e-06
 Identities = 23/40 (57%), Positives = 28/40 (70%)
 Frame = +2

Query: 179 ELLSFPPEINIYIVPNKWVFKLKLKSDGSIEQSKACLVAK 298
           EL+   P  NI  +  KWVFK KLKSDGS+++ KA LVAK
Sbjct: 666 ELVPLSPSQNI--IGCKWVFKRKLKSDGSLDRYKARLVAK 703



 Score = 33.5 bits (75), Expect(2) = 5e-06
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = +3

Query: 78  TSSTVEPTCYSQAVRFPEWRKAMTDD 155
           TS+ VEP+C+S+A++   WR AM+++
Sbjct: 630 TSAIVEPSCHSRAIKDVHWRHAMSEE 655


>emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]
          Length = 1262

 Score = 37.7 bits (86), Expect(2) = 6e-06
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 57   HVLAAQLTSSTVEPTCYSQAVRFPEWRKAMTDDRSSEEQD 176
            H     + SST EP  Y QAV  P W+ AMTD+  + E +
Sbjct: 909  HKAFISIISSTFEPKTYKQAVSIPHWKTAMTDEIKALEHN 948



 Score = 37.0 bits (84), Expect(2) = 6e-06
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +2

Query: 179  ELLSFPPEINIYIVPNKWVFKLKLKSDGSIEQSKACLVAK 298
            +L   PP  N   +  KWV+++K K+DGS+E+ KA LVAK
Sbjct: 952  DLAILPP--NKTTIGCKWVYQVKFKADGSVERYKARLVAK 989