BLASTX nr result
ID: Coptis24_contig00019548
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00019548 (521 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containi... 159 2e-37 emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera] 159 2e-37 ref|XP_002883344.1| pentatricopeptide repeat-containing protein ... 156 1e-36 ref|NP_188854.1| pentatricopeptide repeat-containing protein [Ar... 155 3e-36 ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|2... 149 2e-34 >ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Vitis vinifera] Length = 825 Score = 159 bits (402), Expect = 2e-37 Identities = 89/144 (61%), Positives = 100/144 (69%), Gaps = 11/144 (7%) Frame = +2 Query: 119 MRSRLSELCKQGQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTAN 298 +RSRLS LC+QG P A LFD++PRPT T+LWNTIIIGFICN MP DAL FYARM + Sbjct: 40 IRSRLSHLCRQGHPHQALHLFDSIPRPT-TVLWNTIIIGFICNNMPIDALLFYARMRASP 98 Query: 299 --KSDSYTYSSLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLN---- 460 K DSYT+SS LKACA R LKLGK +HC VLRSH + IV NSLLNMY++CL Sbjct: 99 SPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPY 158 Query: 461 -GT----ERFDLVGNVFDRMSKRN 517 GT DLV VFD M KRN Sbjct: 159 LGTAYDFNNCDLVRRVFDTMRKRN 182 Score = 61.6 bits (148), Expect = 6e-08 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Frame = +2 Query: 152 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANKS--DSYTYSS 325 G D AR +FD +T +WNT+I G++ N P +A+ + +++ + + D T+ S Sbjct: 269 GCVDFAREIFDCCLE-RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLS 327 Query: 326 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDR 502 L A + + L+LG+ +H +L+S + L ++ N+++ MY+ C + F + N+ +R Sbjct: 328 ALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLER 386 >emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera] Length = 825 Score = 159 bits (402), Expect = 2e-37 Identities = 89/144 (61%), Positives = 100/144 (69%), Gaps = 11/144 (7%) Frame = +2 Query: 119 MRSRLSELCKQGQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTAN 298 +RSRLS LC+QG P A LFD++PRPT T+LWNTIIIGFICN MP DAL FYARM + Sbjct: 40 IRSRLSHLCRQGHPHQALHLFDSIPRPT-TVLWNTIIIGFICNNMPIDALLFYARMRASP 98 Query: 299 --KSDSYTYSSLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLN---- 460 K DSYT+SS LKACA R LKLGK +HC VLRSH + IV NSLLNMY++CL Sbjct: 99 SPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPY 158 Query: 461 -GT----ERFDLVGNVFDRMSKRN 517 GT DLV VFD M KRN Sbjct: 159 LGTAYDFNNCDLVRRVFDTMRKRN 182 Score = 60.8 bits (146), Expect = 1e-07 Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Frame = +2 Query: 152 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANKS--DSYTYSS 325 G D AR +FD +T +WNT+I G++ N P +A+ + +++ + + D T+ S Sbjct: 269 GCVDFAREIFDCCLE-RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLS 327 Query: 326 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDR 502 L A + + L LG+ +H +L+S + L ++ N+++ MY+ C + F + N+ +R Sbjct: 328 ALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLER 386 >ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 824 Score = 156 bits (395), Expect = 1e-36 Identities = 77/142 (54%), Positives = 104/142 (73%), Gaps = 9/142 (6%) Frame = +2 Query: 119 MRSRLSELCKQGQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTA- 295 +RSRLS++C++G P +AR+LFD +P+PT T+LWNTIIIGFICN +PH+AL FY+RM Sbjct: 42 IRSRLSKICQEGNPQLARQLFDAIPKPT-TVLWNTIIIGFICNNLPHEALLFYSRMKKTA 100 Query: 296 --NKSDSYTYSSLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLN--G 463 K D+YTYSS LKACA+T+ LK GK +HC ++R + +V NSL+NMY SCLN G Sbjct: 101 PFTKCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPG 160 Query: 464 TE----RFDLVGNVFDRMSKRN 517 +E +D+V VFD M ++N Sbjct: 161 SELDCFEYDVVRKVFDNMRRKN 182 >ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22150, chloroplastic; Flags: Precursor gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana] gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana] gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 820 Score = 155 bits (392), Expect = 3e-36 Identities = 74/138 (53%), Positives = 100/138 (72%), Gaps = 5/138 (3%) Frame = +2 Query: 119 MRSRLSELCKQGQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTA- 295 +RSRLS++C+ G P +AR+LFD +P+PT T+LWNTIIIGFICN +PH+AL FY+RM Sbjct: 42 IRSRLSKICQDGNPQLARQLFDAIPKPT-TVLWNTIIIGFICNNLPHEALLFYSRMKKTA 100 Query: 296 --NKSDSYTYSSLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTE 469 D+YTYSS LKACA+T+ LK GK +HC ++R + +V NSL+NMY SCLN + Sbjct: 101 PFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPD 160 Query: 470 --RFDLVGNVFDRMSKRN 517 +D+V VFD M ++N Sbjct: 161 CFEYDVVRKVFDNMRRKN 178 >ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|222854749|gb|EEE92296.1| predicted protein [Populus trichocarpa] Length = 465 Score = 149 bits (377), Expect = 2e-34 Identities = 77/144 (53%), Positives = 106/144 (73%), Gaps = 11/144 (7%) Frame = +2 Query: 119 MRSRLSELCKQGQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTAN 298 +RSRLS+LC++GQP +A +LFDT PRPT T++ NTIIIGFICN +P +A+ FY+++ +++ Sbjct: 45 IRSRLSKLCQEGQPHIALQLFDTFPRPT-TVICNTIIIGFICNNLPLEAILFYSKLKSSS 103 Query: 299 ---KSDSYTYSSLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGT- 466 K DSYTYSS LKACA+TR LK+G+ +HC ++R S + IV NSLLNMY+SCL+ Sbjct: 104 LGTKFDSYTYSSTLKACAETRSLKIGRAIHCHLIRCLSNPSRIVYNSLLNMYSSCLSNVG 163 Query: 467 -------ERFDLVGNVFDRMSKRN 517 ++DLV VFD M KR+ Sbjct: 164 CLSYLDYSKYDLVHKVFDTMRKRD 187