BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019548
         (521 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containi...   159   2e-37
emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]   159   2e-37
ref|XP_002883344.1| pentatricopeptide repeat-containing protein ...   156   1e-36
ref|NP_188854.1| pentatricopeptide repeat-containing protein [Ar...   155   3e-36
ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|2...   149   2e-34

>ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  159 bits (402), Expect = 2e-37
 Identities = 89/144 (61%), Positives = 100/144 (69%), Gaps = 11/144 (7%)
 Frame = +2

Query: 119 MRSRLSELCKQGQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTAN 298
           +RSRLS LC+QG P  A  LFD++PRPT T+LWNTIIIGFICN MP DAL FYARM  + 
Sbjct: 40  IRSRLSHLCRQGHPHQALHLFDSIPRPT-TVLWNTIIIGFICNNMPIDALLFYARMRASP 98

Query: 299 --KSDSYTYSSLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLN---- 460
             K DSYT+SS LKACA  R LKLGK +HC VLRSH   + IV NSLLNMY++CL     
Sbjct: 99  SPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPY 158

Query: 461 -GT----ERFDLVGNVFDRMSKRN 517
            GT       DLV  VFD M KRN
Sbjct: 159 LGTAYDFNNCDLVRRVFDTMRKRN 182



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
 Frame = +2

Query: 152 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANKS--DSYTYSS 325
           G  D AR +FD      +T +WNT+I G++ N  P +A+  + +++ + +   D  T+ S
Sbjct: 269 GCVDFAREIFDCCLE-RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLS 327

Query: 326 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDR 502
            L A +  + L+LG+ +H  +L+S + L  ++ N+++ MY+ C +    F +  N+ +R
Sbjct: 328 ALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLER 386


>emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  159 bits (402), Expect = 2e-37
 Identities = 89/144 (61%), Positives = 100/144 (69%), Gaps = 11/144 (7%)
 Frame = +2

Query: 119 MRSRLSELCKQGQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTAN 298
           +RSRLS LC+QG P  A  LFD++PRPT T+LWNTIIIGFICN MP DAL FYARM  + 
Sbjct: 40  IRSRLSHLCRQGHPHQALHLFDSIPRPT-TVLWNTIIIGFICNNMPIDALLFYARMRASP 98

Query: 299 --KSDSYTYSSLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLN---- 460
             K DSYT+SS LKACA  R LKLGK +HC VLRSH   + IV NSLLNMY++CL     
Sbjct: 99  SPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPY 158

Query: 461 -GT----ERFDLVGNVFDRMSKRN 517
            GT       DLV  VFD M KRN
Sbjct: 159 LGTAYDFNNCDLVRRVFDTMRKRN 182



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
 Frame = +2

Query: 152 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANKS--DSYTYSS 325
           G  D AR +FD      +T +WNT+I G++ N  P +A+  + +++ + +   D  T+ S
Sbjct: 269 GCVDFAREIFDCCLE-RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLS 327

Query: 326 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDR 502
            L A +  + L LG+ +H  +L+S + L  ++ N+++ MY+ C +    F +  N+ +R
Sbjct: 328 ALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLER 386


>ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329184|gb|EFH59603.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 824

 Score =  156 bits (395), Expect = 1e-36
 Identities = 77/142 (54%), Positives = 104/142 (73%), Gaps = 9/142 (6%)
 Frame = +2

Query: 119 MRSRLSELCKQGQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTA- 295
           +RSRLS++C++G P +AR+LFD +P+PT T+LWNTIIIGFICN +PH+AL FY+RM    
Sbjct: 42  IRSRLSKICQEGNPQLARQLFDAIPKPT-TVLWNTIIIGFICNNLPHEALLFYSRMKKTA 100

Query: 296 --NKSDSYTYSSLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLN--G 463
              K D+YTYSS LKACA+T+ LK GK +HC ++R     + +V NSL+NMY SCLN  G
Sbjct: 101 PFTKCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPG 160

Query: 464 TE----RFDLVGNVFDRMSKRN 517
           +E     +D+V  VFD M ++N
Sbjct: 161 SELDCFEYDVVRKVFDNMRRKN 182


>ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
           gi|11994734|dbj|BAB03063.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|110739449|dbj|BAF01634.1| hypothetical protein
           [Arabidopsis thaliana] gi|332643073|gb|AEE76594.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 820

 Score =  155 bits (392), Expect = 3e-36
 Identities = 74/138 (53%), Positives = 100/138 (72%), Gaps = 5/138 (3%)
 Frame = +2

Query: 119 MRSRLSELCKQGQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTA- 295
           +RSRLS++C+ G P +AR+LFD +P+PT T+LWNTIIIGFICN +PH+AL FY+RM    
Sbjct: 42  IRSRLSKICQDGNPQLARQLFDAIPKPT-TVLWNTIIIGFICNNLPHEALLFYSRMKKTA 100

Query: 296 --NKSDSYTYSSLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTE 469
                D+YTYSS LKACA+T+ LK GK +HC ++R     + +V NSL+NMY SCLN  +
Sbjct: 101 PFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPD 160

Query: 470 --RFDLVGNVFDRMSKRN 517
              +D+V  VFD M ++N
Sbjct: 161 CFEYDVVRKVFDNMRRKN 178


>ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|222854749|gb|EEE92296.1|
           predicted protein [Populus trichocarpa]
          Length = 465

 Score =  149 bits (377), Expect = 2e-34
 Identities = 77/144 (53%), Positives = 106/144 (73%), Gaps = 11/144 (7%)
 Frame = +2

Query: 119 MRSRLSELCKQGQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTAN 298
           +RSRLS+LC++GQP +A +LFDT PRPT T++ NTIIIGFICN +P +A+ FY+++ +++
Sbjct: 45  IRSRLSKLCQEGQPHIALQLFDTFPRPT-TVICNTIIIGFICNNLPLEAILFYSKLKSSS 103

Query: 299 ---KSDSYTYSSLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGT- 466
              K DSYTYSS LKACA+TR LK+G+ +HC ++R  S  + IV NSLLNMY+SCL+   
Sbjct: 104 LGTKFDSYTYSSTLKACAETRSLKIGRAIHCHLIRCLSNPSRIVYNSLLNMYSSCLSNVG 163

Query: 467 -------ERFDLVGNVFDRMSKRN 517
                   ++DLV  VFD M KR+
Sbjct: 164 CLSYLDYSKYDLVHKVFDTMRKRD 187