BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019470
         (255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containi...   121   5e-26
ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containi...   118   4e-25
ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containi...   118   4e-25
ref|XP_002306340.1| predicted protein [Populus trichocarpa] gi|2...   106   2e-21
ref|XP_002532046.1| pentatricopeptide repeat-containing protein,...   101   7e-20

>ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic [Vitis vinifera]
           gi|296082481|emb|CBI21486.3| unnamed protein product
           [Vitis vinifera]
          Length = 489

 Score =  121 bits (304), Expect = 5e-26
 Identities = 56/86 (65%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
 Frame = -1

Query: 255 KPTQFHLQNSPFTRI-SCISTRPKRKAGVKIDKSETEELVKTLLRNFNDKKPLVNVLDKY 79
           KPT+ HL   P T + SC+STRP+RK G K DKSE EELV+ L++NF  ++PL++ L+KY
Sbjct: 33  KPTRLHLPPRPSTTVVSCVSTRPRRKPGPKPDKSEVEELVRVLMKNFGGERPLISTLNKY 92

Query: 78  VKLIRTEHCFHLFEELGKRDKWLQCL 1
           VK+IRTEHCF LFEELGK DKWLQCL
Sbjct: 93  VKVIRTEHCFRLFEELGKTDKWLQCL 118


>ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 494

 Score =  118 bits (296), Expect = 4e-25
 Identities = 53/84 (63%), Positives = 68/84 (80%)
 Frame = -1

Query: 252 PTQFHLQNSPFTRISCISTRPKRKAGVKIDKSETEELVKTLLRNFNDKKPLVNVLDKYVK 73
           P    ++ +  TR+ CISTRP RK GVK D+SE EELV+ ++RNF+DK+PL+  LDKYV+
Sbjct: 28  PLPSSIKKAVSTRVVCISTRPSRKFGVKTDRSEAEELVRGIIRNFSDKEPLLKTLDKYVR 87

Query: 72  LIRTEHCFHLFEELGKRDKWLQCL 1
           ++RTEHCF LFEELGKRDKWL+CL
Sbjct: 88  VMRTEHCFLLFEELGKRDKWLECL 111


>ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 528

 Score =  118 bits (296), Expect = 4e-25
 Identities = 53/84 (63%), Positives = 68/84 (80%)
 Frame = -1

Query: 252 PTQFHLQNSPFTRISCISTRPKRKAGVKIDKSETEELVKTLLRNFNDKKPLVNVLDKYVK 73
           P    ++ +  TR+ CISTRP RK GVK D+SE EELV+ ++RNF+DK+PL+  LDKYV+
Sbjct: 28  PLPSSIKKAVSTRVVCISTRPSRKFGVKTDRSEAEELVRGIIRNFSDKEPLLKTLDKYVR 87

Query: 72  LIRTEHCFHLFEELGKRDKWLQCL 1
           ++RTEHCF LFEELGKRDKWL+CL
Sbjct: 88  VMRTEHCFLLFEELGKRDKWLECL 111


>ref|XP_002306340.1| predicted protein [Populus trichocarpa] gi|222855789|gb|EEE93336.1|
           predicted protein [Populus trichocarpa]
          Length = 416

 Score =  106 bits (265), Expect = 2e-21
 Identities = 47/73 (64%), Positives = 62/73 (84%)
 Frame = -1

Query: 219 TRISCISTRPKRKAGVKIDKSETEELVKTLLRNFNDKKPLVNVLDKYVKLIRTEHCFHLF 40
           T++SC+STRPK++     +KSE +ELV+ L+R+F+DK+PLV  L+KYVK++RTEHCF LF
Sbjct: 1   TQVSCVSTRPKKRPVPTDEKSEAQELVRVLVRSFSDKQPLVKTLNKYVKVMRTEHCFMLF 60

Query: 39  EELGKRDKWLQCL 1
           EELGK DKWLQCL
Sbjct: 61  EELGKTDKWLQCL 73


>ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528289|gb|EEF30336.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 478

 Score =  101 bits (251), Expect = 7e-20
 Identities = 47/74 (63%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
 Frame = -1

Query: 219 TRISCISTRPKRKAGVKIDKSETEELVKTLLRNFN-DKKPLVNVLDKYVKLIRTEHCFHL 43
           T I+C+STRP++K     ++SETE+LV+ +LR+F+ DK PLV  LDKYV+++RTEHCF L
Sbjct: 43  THITCVSTRPRKKRFPISEESETEDLVRYVLRSFSSDKVPLVRTLDKYVRVVRTEHCFLL 102

Query: 42  FEELGKRDKWLQCL 1
           FEELG+RDKWLQCL
Sbjct: 103 FEELGRRDKWLQCL 116