BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019408
         (414 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003611801.1| Upstream activation factor subunit spp27 [Me...   173   1e-41
gb|ACJ85465.1| unknown [Medicago truncatula]                          172   3e-41
ref|XP_003632462.1| PREDICTED: upstream activation factor subuni...   163   1e-38
emb|CBI23284.3| unnamed protein product [Vitis vinifera]              163   1e-38
emb|CAN83123.1| hypothetical protein VITISV_044372 [Vitis vinifera]   163   1e-38

>ref|XP_003611801.1| Upstream activation factor subunit spp27 [Medicago truncatula]
           gi|355513136|gb|AES94759.1| Upstream activation factor
           subunit spp27 [Medicago truncatula]
          Length = 361

 Score =  173 bits (439), Expect = 1e-41
 Identities = 84/134 (62%), Positives = 100/134 (74%)
 Frame = -2

Query: 413 SNNKNKDVKRKGNGGGFNKVCSLSPELQQLLGVPELARTEVVKQLWAYIRENDLQDPSNR 234
           SN    +V +K  GGGF K+CSLSP+LQ+ +G PE+ARTEVVKQLWAYIRE DLQDP+NR
Sbjct: 116 SNKSGDEVVKKKGGGGFCKICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNR 175

Query: 233 KNIKCDEPLRLLFRVDIINMFQMNKALSRHIWPLDSENVTSTANEKQRNKEKPEATVTSA 54
           +NI CDEPLR LF VD INMFQMNK L++HIWPLDS++V      K   KEKP      A
Sbjct: 176 RNIICDEPLRALFGVDTINMFQMNKVLAKHIWPLDSDDVIQV---KSAPKEKPAPKEKPA 232

Query: 53  PKEKRKQERHEDDD 12
            KEK+K++  EDDD
Sbjct: 233 RKEKKKKQEREDDD 246



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = -2

Query: 404 KNKDVKRK-GNGGGFNKVCSLSPELQQLLGVPELARTEVVKQLWAYIRENDLQDPSNRKN 228
           K K+ ++K G+G GF     LS  L + LG  EL+R++V+K++W YI+ N+LQDPS+++ 
Sbjct: 251 KGKEKRQKVGSGKGFLAPLQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQ 310

Query: 227 IKCDEPLRLLFRVDIINMFQMNKALSRH 144
           I CDE L+ LF VD    F + K L+ H
Sbjct: 311 ILCDEKLKELFDVDSFVGFTVTKLLAPH 338


>gb|ACJ85465.1| unknown [Medicago truncatula]
          Length = 320

 Score =  172 bits (435), Expect = 3e-41
 Identities = 83/134 (61%), Positives = 99/134 (73%)
 Frame = -2

Query: 413 SNNKNKDVKRKGNGGGFNKVCSLSPELQQLLGVPELARTEVVKQLWAYIRENDLQDPSNR 234
           SN    +V +K  GGGF K+CSLSP+LQ+ +G PE+ARTEVVKQLWAYIRE DLQDP+NR
Sbjct: 116 SNKSGDEVVKKKGGGGFCKICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNR 175

Query: 233 KNIKCDEPLRLLFRVDIINMFQMNKALSRHIWPLDSENVTSTANEKQRNKEKPEATVTSA 54
           +NI CDEPLR LF VD INMFQMNK L++HIWPLDS++V      K   KEKP       
Sbjct: 176 RNIICDEPLRALFGVDTINMFQMNKVLAKHIWPLDSDDVIQV---KSAPKEKPAPKEKPT 232

Query: 53  PKEKRKQERHEDDD 12
            KEK+K++  EDDD
Sbjct: 233 RKEKKKKQEREDDD 246



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
 Frame = -2

Query: 404 KNKDVKRK-GNGGGFNKVCSLSPELQQLLGVPELARTEVVKQLWAYIRENDLQDPSNRKN 228
           K K+ ++K G+G GF     LS  L + LG  EL+R++V+K++W YI+ N+LQDPS+++ 
Sbjct: 251 KGKEKRQKVGSGKGFIAPLQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQ 310

Query: 227 IKCDEPLRLL 198
           I CDE L+ L
Sbjct: 311 ILCDEKLKEL 320


>ref|XP_003632462.1| PREDICTED: upstream activation factor subunit spp27-like [Vitis
           vinifera]
          Length = 296

 Score =  163 bits (413), Expect = 1e-38
 Identities = 83/132 (62%), Positives = 103/132 (78%), Gaps = 3/132 (2%)
 Frame = -2

Query: 413 SNNKNKDVKRKGNGGGFNKVCSLSPELQQLLGVPELARTEVVKQLWAYIRENDLQDPSNR 234
           S   NK+VK++G  GGF K+CSLSPELQ+ +GVPELARTEVVKQLW +IRE DLQDP+NR
Sbjct: 119 SKKSNKEVKKRG--GGFCKLCSLSPELQKFIGVPELARTEVVKQLWVHIREKDLQDPNNR 176

Query: 233 KNIKCDEPLRLLFRVDIINMFQMNKALSRHIWPLDSEN---VTSTANEKQRNKEKPEATV 63
           +NI CDE LR LF VD INMFQMNKALS+HIWPLDS++   V  T  EKQR +E+ +   
Sbjct: 177 RNIICDETLRALFGVDSINMFQMNKALSKHIWPLDSDDAAPVKPTPKEKQRKQERDD--- 233

Query: 62  TSAPKEKRKQER 27
           +  PK K+K+++
Sbjct: 234 SDEPKRKQKRQK 245


>emb|CBI23284.3| unnamed protein product [Vitis vinifera]
          Length = 303

 Score =  163 bits (413), Expect = 1e-38
 Identities = 83/132 (62%), Positives = 103/132 (78%), Gaps = 3/132 (2%)
 Frame = -2

Query: 413 SNNKNKDVKRKGNGGGFNKVCSLSPELQQLLGVPELARTEVVKQLWAYIRENDLQDPSNR 234
           S   NK+VK++G  GGF K+CSLSPELQ+ +GVPELARTEVVKQLW +IRE DLQDP+NR
Sbjct: 119 SKKSNKEVKKRG--GGFCKLCSLSPELQKFIGVPELARTEVVKQLWVHIREKDLQDPNNR 176

Query: 233 KNIKCDEPLRLLFRVDIINMFQMNKALSRHIWPLDSEN---VTSTANEKQRNKEKPEATV 63
           +NI CDE LR LF VD INMFQMNKALS+HIWPLDS++   V  T  EKQR +E+ +   
Sbjct: 177 RNIICDETLRALFGVDSINMFQMNKALSKHIWPLDSDDAAPVKPTPKEKQRKQERDD--- 233

Query: 62  TSAPKEKRKQER 27
           +  PK K+K+++
Sbjct: 234 SDEPKRKQKRQK 245


>emb|CAN83123.1| hypothetical protein VITISV_044372 [Vitis vinifera]
          Length = 332

 Score =  163 bits (413), Expect = 1e-38
 Identities = 83/132 (62%), Positives = 103/132 (78%), Gaps = 3/132 (2%)
 Frame = -2

Query: 413 SNNKNKDVKRKGNGGGFNKVCSLSPELQQLLGVPELARTEVVKQLWAYIRENDLQDPSNR 234
           S   NK+VK++G  GGF K+CSLSPELQ+ +GVPELARTEVVKQLW +IRE DLQDP+NR
Sbjct: 119 SKKSNKEVKKRG--GGFCKLCSLSPELQKFIGVPELARTEVVKQLWVHIREKDLQDPNNR 176

Query: 233 KNIKCDEPLRLLFRVDIINMFQMNKALSRHIWPLDSEN---VTSTANEKQRNKEKPEATV 63
           +NI CDE LR LF VD INMFQMNKALS+HIWPLDS++   V  T  EKQR +E+ +   
Sbjct: 177 RNIICDETLRALFGVDSINMFQMNKALSKHIWPLDSDDAAPVKPTPKEKQRKQERXD--- 233

Query: 62  TSAPKEKRKQER 27
           +  PK K+K+++
Sbjct: 234 SDEPKRKQKRQK 245



 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
 Frame = -2

Query: 404 KNKDVKRKGNGGGFNKVCSLSPELQQLLGVPE--LARTEVVKQLWAYIRENDLQDPSNRK 231
           K K  ++KG   GF     LS  L + L + E  L+R EVVK++W YI++N+LQDPS+++
Sbjct: 238 KRKQKRQKGGNSGFLAPLPLSDALVKFLNIEESALSRAEVVKKIWEYIKQNNLQDPSDKR 297

Query: 230 NIKCDEPLRLLFRVDIINMFQMNKALSRH 144
            I CDE L+ LF VD  N F + K LS H
Sbjct: 298 RIICDEKLKELFDVDSFNGFTVPKLLSAH 326