BLASTX nr result

ID: Coptis24_contig00019370 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019370
         (783 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327548.1| predicted protein [Populus trichocarpa] gi|2...   154   2e-35
ref|XP_002280177.1| PREDICTED: uncharacterized protein LOC100260...   154   3e-35
ref|XP_003529831.1| PREDICTED: uncharacterized protein LOC100803...   145   7e-33
ref|XP_004146850.1| PREDICTED: mediator of RNA polymerase II tra...   143   5e-32
ref|NP_001236013.1| uncharacterized protein LOC100305737 [Glycin...   141   2e-31

>ref|XP_002327548.1| predicted protein [Populus trichocarpa] gi|222836102|gb|EEE74523.1|
           predicted protein [Populus trichocarpa]
          Length = 190

 Score =  154 bits (389), Expect = 2e-35
 Identities = 75/95 (78%), Positives = 86/95 (90%)
 Frame = +2

Query: 266 SLASHFHLLHLVENLADVIENGTRDQHTDVLINELTSNFDKCQQLLNSISGSISSKAVTV 445
           SLASHFHLL L ENLAD IENGTRDQH+D L+NEL ++FDKCQQLLNSIS SI++KA+TV
Sbjct: 95  SLASHFHLLQLAENLADAIENGTRDQHSDALVNELNTHFDKCQQLLNSISSSINAKAMTV 154

Query: 446 EGQKRKFEESEQLLNQRRELIAKYRSSVDELVKED 550
           EGQKRK EESEQLLNQRRELI KYR+SV+EL+K +
Sbjct: 155 EGQKRKLEESEQLLNQRRELIGKYRNSVEELLKSE 189


>ref|XP_002280177.1| PREDICTED: uncharacterized protein LOC100260024 [Vitis vinifera]
           gi|147856497|emb|CAN78638.1| hypothetical protein
           VITISV_031737 [Vitis vinifera]
           gi|297743090|emb|CBI35957.3| unnamed protein product
           [Vitis vinifera]
          Length = 166

 Score =  154 bits (388), Expect = 3e-35
 Identities = 74/95 (77%), Positives = 88/95 (92%)
 Frame = +2

Query: 266 SLASHFHLLHLVENLADVIENGTRDQHTDVLINELTSNFDKCQQLLNSISGSISSKAVTV 445
           SLASHFHLLHLVENL+D IENGTRDQH+D L+ EL S+F+KCQQLLNSIS SI++KA+TV
Sbjct: 71  SLASHFHLLHLVENLSDAIENGTRDQHSDALVRELNSHFEKCQQLLNSISVSINTKAMTV 130

Query: 446 EGQKRKFEESEQLLNQRRELIAKYRSSVDELVKED 550
           EGQKRK EESEQLLNQRR+LIAKYR+SV++L+K +
Sbjct: 131 EGQKRKLEESEQLLNQRRDLIAKYRNSVEDLIKSE 165


>ref|XP_003529831.1| PREDICTED: uncharacterized protein LOC100803884 [Glycine max]
          Length = 195

 Score =  145 bits (367), Expect = 7e-33
 Identities = 71/95 (74%), Positives = 87/95 (91%)
 Frame = +2

Query: 266 SLASHFHLLHLVENLADVIENGTRDQHTDVLINELTSNFDKCQQLLNSISGSISSKAVTV 445
           SLASH+HLLHLVENLA+VIE+GT DQ +D LINEL+++F+KCQQLLNSIS SIS+KA+TV
Sbjct: 100 SLASHYHLLHLVENLAEVIEHGTPDQQSDALINELSNHFEKCQQLLNSISDSISTKAMTV 159

Query: 446 EGQKRKFEESEQLLNQRRELIAKYRSSVDELVKED 550
           EGQK+K EESEQLLNQRR+LIA YR SV++LV+ +
Sbjct: 160 EGQKKKLEESEQLLNQRRDLIANYRKSVEDLVRSE 194


>ref|XP_004146850.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           9-like [Cucumis sativus]
          Length = 133

 Score =  143 bits (360), Expect = 5e-32
 Identities = 69/93 (74%), Positives = 83/93 (89%)
 Frame = +2

Query: 266 SLASHFHLLHLVENLADVIENGTRDQHTDVLINELTSNFDKCQQLLNSISGSISSKAVTV 445
           SLASHFHLLHLVE LAD IENGTRDQ +D L+N+L ++F+KC+QLLNSISGS+SSKA+T 
Sbjct: 38  SLASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTK 97

Query: 446 EGQKRKFEESEQLLNQRRELIAKYRSSVDELVK 544
           EGQK+K EE EQLL+ RRELI KY++SV+ELVK
Sbjct: 98  EGQKKKLEEHEQLLSHRRELIGKYKNSVEELVK 130


>ref|NP_001236013.1| uncharacterized protein LOC100305737 [Glycine max]
           gi|255626477|gb|ACU13583.1| unknown [Glycine max]
          Length = 177

 Score =  141 bits (355), Expect = 2e-31
 Identities = 69/95 (72%), Positives = 85/95 (89%)
 Frame = +2

Query: 266 SLASHFHLLHLVENLADVIENGTRDQHTDVLINELTSNFDKCQQLLNSISGSISSKAVTV 445
           SLASH+HLLHLVENLA+VIE+GT DQ +D LINE +++F+KC QLLNSISGSIS+KA+TV
Sbjct: 76  SLASHYHLLHLVENLAEVIEHGTPDQPSDALINESSNHFEKCLQLLNSISGSISTKAMTV 135

Query: 446 EGQKRKFEESEQLLNQRRELIAKYRSSVDELVKED 550
           EGQK+K EESEQLLNQRR+LI  YR SV++LV+ +
Sbjct: 136 EGQKKKLEESEQLLNQRRDLIGNYRKSVEDLVRSE 170


Top