BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019317
         (1238 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277241.1| PREDICTED: ribonuclease Z, chloroplastic [Vi...   488   e-135
ref|XP_002528949.1| ribonuclease z, chloroplast, putative [Ricin...   473   e-131
ref|XP_002321158.1| predicted protein [Populus trichocarpa] gi|2...   467   e-129
ref|XP_004156084.1| PREDICTED: ribonuclease Z, chloroplastic-lik...   461   e-127
ref|XP_004140131.1| PREDICTED: ribonuclease Z, chloroplastic-lik...   459   e-127

>ref|XP_002277241.1| PREDICTED: ribonuclease Z, chloroplastic [Vitis vinifera]
            gi|297739240|emb|CBI28891.3| unnamed protein product
            [Vitis vinifera]
          Length = 354

 Score =  488 bits (1256), Expect = e-135
 Identities = 236/306 (77%), Positives = 268/306 (87%), Gaps = 1/306 (0%)
 Frame = -1

Query: 1010 RGSGFLSAVDRVIEEEE-YRKYRAQTNRKGVDLEGYVIEGVSIGGHETCIVVPRLNAAFD 834
            +GSG+LS + R IEEEE YRK RA+  R GVDLEGY IEG+SIGGHETC+++P L +AFD
Sbjct: 46   KGSGYLSLIGRAIEEEEEYRKARAEVARNGVDLEGYSIEGISIGGHETCVIIPELKSAFD 105

Query: 833  IGRCPSRAIQQDFLFITHAHLDHIGGLPMYVATRGLYSLKPPTIFVPPCIKEDVEKLFEI 654
            IGRCPSRAIQQ+FLFITHAHLDHIGGLPMYVATRGLY+LKPPTIFVPPCIKEDVEKLF+I
Sbjct: 106  IGRCPSRAIQQNFLFITHAHLDHIGGLPMYVATRGLYNLKPPTIFVPPCIKEDVEKLFDI 165

Query: 653  HRKMSQXXXXXXXXXXXVGETYELRNDLVVRPFKTHHVIPSQGYAIYSIRKKLKKQYTHL 474
            HR +SQ           VGETYE+RN+LVVRPFKTHHVIPSQGY IY++RKKLKKQY HL
Sbjct: 166  HRALSQVELKLDLVALDVGETYEMRNNLVVRPFKTHHVIPSQGYVIYTVRKKLKKQYIHL 225

Query: 473  KGKQIEKLKKQGVEITDVILSPEMAFTGDTTSDFLLDPRNADALRAKILITEATFLDGGI 294
            KGKQIEKLK  G+EITD ILSPE+AFTGDT SDF+L+PRNADALRAK+LITEATFLD GI
Sbjct: 226  KGKQIEKLKNSGIEITDTILSPEVAFTGDTRSDFMLEPRNADALRAKVLITEATFLDNGI 285

Query: 293  SIEHARRHGHTHLFELIEHAKWMRNEAILLTHFSSRYKIQDIDEAVSKLQQKVPGKVVAL 114
            SI+HAR HGHTHLFE+IE+A+W+RN+A+LLTHFSSRY I+DI +AVSKLQ KV  +VV L
Sbjct: 286  SIDHAREHGHTHLFEIIENAEWIRNKAVLLTHFSSRYHIEDIRKAVSKLQSKVSARVVPL 345

Query: 113  KEGFKS 96
             EGFKS
Sbjct: 346  MEGFKS 351


>ref|XP_002528949.1| ribonuclease z, chloroplast, putative [Ricinus communis]
            gi|223531595|gb|EEF33423.1| ribonuclease z, chloroplast,
            putative [Ricinus communis]
          Length = 361

 Score =  473 bits (1218), Expect = e-131
 Identities = 228/311 (73%), Positives = 267/311 (85%), Gaps = 1/311 (0%)
 Frame = -1

Query: 1016 ALRGSGFLSAVDRVIEEEE-YRKYRAQTNRKGVDLEGYVIEGVSIGGHETCIVVPRLNAA 840
            +L+ +G+LSA+ RVIEEEE YRK RA   RKG+DLEGY IEG+SIGG ETC+++P    A
Sbjct: 51   SLKSTGYLSAIGRVIEEEEEYRKARAAVIRKGIDLEGYSIEGLSIGGQETCLIIPEFKCA 110

Query: 839  FDIGRCPSRAIQQDFLFITHAHLDHIGGLPMYVATRGLYSLKPPTIFVPPCIKEDVEKLF 660
            FDIGRCPSRAI Q+F+FITHAHLDHIGGLPMYVA+RGLY+LKPPT+FVPPCIKEDVEKLF
Sbjct: 111  FDIGRCPSRAIHQNFVFITHAHLDHIGGLPMYVASRGLYNLKPPTVFVPPCIKEDVEKLF 170

Query: 659  EIHRKMSQXXXXXXXXXXXVGETYELRNDLVVRPFKTHHVIPSQGYAIYSIRKKLKKQYT 480
            +IHR M Q           VGETYELRN++VVRPF+T HVIPSQGY IYS+RKKLKKQYT
Sbjct: 171  DIHRSMGQVELNLELVALDVGETYELRNNVVVRPFRTQHVIPSQGYVIYSVRKKLKKQYT 230

Query: 479  HLKGKQIEKLKKQGVEITDVILSPEMAFTGDTTSDFLLDPRNADALRAKILITEATFLDG 300
            HLKGKQIEKLKK GVEITD++LSPE+AFTGDTT++++LDP NADALRAK+LITEATFLD 
Sbjct: 231  HLKGKQIEKLKKSGVEITDIMLSPEVAFTGDTTAEYMLDPHNADALRAKVLITEATFLDE 290

Query: 299  GISIEHARRHGHTHLFELIEHAKWMRNEAILLTHFSSRYKIQDIDEAVSKLQQKVPGKVV 120
            G SIEHAR+HGHTHL E+IE+A+W+RN+++LLTHFSSRY ++DI +AV KLQ KV  KVV
Sbjct: 291  GFSIEHARQHGHTHLLEIIENAEWIRNKSVLLTHFSSRYTVEDIRQAVLKLQSKVSAKVV 350

Query: 119  ALKEGFKSAES 87
             L EGFKS  S
Sbjct: 351  PLTEGFKSTYS 361


>ref|XP_002321158.1| predicted protein [Populus trichocarpa] gi|222861931|gb|EEE99473.1|
            predicted protein [Populus trichocarpa]
          Length = 366

 Score =  467 bits (1202), Expect = e-129
 Identities = 232/318 (72%), Positives = 265/318 (83%), Gaps = 1/318 (0%)
 Frame = -1

Query: 1037 IKNHTLYALRGSGFLSAVDRVIEEEE-YRKYRAQTNRKGVDLEGYVIEGVSIGGHETCIV 861
            IKN   + ++ S FLS + R IEEEE YRK RA   RKG+DL GY IEG+SIGG ETCI+
Sbjct: 50   IKNKP-FIVKASSFLSEIGRAIEEEEDYRKARAAVIRKGIDLGGYAIEGLSIGGQETCII 108

Query: 860  VPRLNAAFDIGRCPSRAIQQDFLFITHAHLDHIGGLPMYVATRGLYSLKPPTIFVPPCIK 681
            +P    AFDIGRCP+RAI Q+F+FITHAHLDHIGGLPMYVA+RGLYSLKPPTIFVPPCIK
Sbjct: 109  IPEFKCAFDIGRCPTRAIHQNFVFITHAHLDHIGGLPMYVASRGLYSLKPPTIFVPPCIK 168

Query: 680  EDVEKLFEIHRKMSQXXXXXXXXXXXVGETYELRNDLVVRPFKTHHVIPSQGYAIYSIRK 501
            +DVEKLF+IHR M Q           VGETYELRND+VVRPF+T HVIPSQGY IYS+RK
Sbjct: 169  DDVEKLFDIHRAMGQVELNFDLVALDVGETYELRNDVVVRPFRTQHVIPSQGYVIYSVRK 228

Query: 500  KLKKQYTHLKGKQIEKLKKQGVEITDVILSPEMAFTGDTTSDFLLDPRNADALRAKILIT 321
            KLKKQY HLKGKQIEKLKK GVEITD+ILSPE+AFTGDTT++++LDPRNADALRAK+LIT
Sbjct: 229  KLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTAEYMLDPRNADALRAKVLIT 288

Query: 320  EATFLDGGISIEHARRHGHTHLFELIEHAKWMRNEAILLTHFSSRYKIQDIDEAVSKLQQ 141
            EATFLD   + EHAR+ GHTHLFE+IE+AKW+R++AILLTHFSSRY I+DI EAVSKLQ 
Sbjct: 289  EATFLDEDFTTEHARQRGHTHLFEIIENAKWIRSKAILLTHFSSRYSIEDIREAVSKLQS 348

Query: 140  KVPGKVVALKEGFKSAES 87
            +V  KVV L EGFKS  S
Sbjct: 349  RVSAKVVPLTEGFKSMYS 366


>ref|XP_004156084.1| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus]
          Length = 347

 Score =  461 bits (1185), Expect = e-127
 Identities = 226/307 (73%), Positives = 256/307 (83%)
 Frame = -1

Query: 1016 ALRGSGFLSAVDRVIEEEEYRKYRAQTNRKGVDLEGYVIEGVSIGGHETCIVVPRLNAAF 837
            + R SG LS +     EEEYR+ R+Q NRKGVDLEGY IEG+S+GG ETC+++P    AF
Sbjct: 42   SFRDSGLLSTIG---VEEEYRRARSQVNRKGVDLEGYSIEGISVGGQETCVIIPEFKCAF 98

Query: 836  DIGRCPSRAIQQDFLFITHAHLDHIGGLPMYVATRGLYSLKPPTIFVPPCIKEDVEKLFE 657
            DIGRCPSRAIQQ+F+FITHAHLDHIGGLPMYVA+RGLYSL PPT+F+P  IKEDVEKL E
Sbjct: 99   DIGRCPSRAIQQNFVFITHAHLDHIGGLPMYVASRGLYSLSPPTVFLPASIKEDVEKLLE 158

Query: 656  IHRKMSQXXXXXXXXXXXVGETYELRNDLVVRPFKTHHVIPSQGYAIYSIRKKLKKQYTH 477
            IHR M Q           VGETYE+RN+LV R F+THHVIPSQGY IYS+RKKLKKQY H
Sbjct: 159  IHRNMGQVELDVDLVALDVGETYEMRNNLVCRAFETHHVIPSQGYVIYSVRKKLKKQYMH 218

Query: 476  LKGKQIEKLKKQGVEITDVILSPEMAFTGDTTSDFLLDPRNADALRAKILITEATFLDGG 297
            LKGKQIEKLKK GVEITD ILSPE+AFTGDTT DF+LDPRNADALRAKILITEATFLD  
Sbjct: 219  LKGKQIEKLKKSGVEITDTILSPEVAFTGDTTPDFMLDPRNADALRAKILITEATFLDEA 278

Query: 296  ISIEHARRHGHTHLFELIEHAKWMRNEAILLTHFSSRYKIQDIDEAVSKLQQKVPGKVVA 117
            +SIEHAR+HGHTH+FE+IE+A+W+RN+AILLTHFSSRY I+DI +AVSKLQ  V  KVV 
Sbjct: 279  VSIEHARQHGHTHIFEIIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSNVTAKVVP 338

Query: 116  LKEGFKS 96
            L EGFKS
Sbjct: 339  LTEGFKS 345


>ref|XP_004140131.1| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus]
          Length = 347

 Score =  459 bits (1182), Expect = e-127
 Identities = 225/307 (73%), Positives = 256/307 (83%)
 Frame = -1

Query: 1016 ALRGSGFLSAVDRVIEEEEYRKYRAQTNRKGVDLEGYVIEGVSIGGHETCIVVPRLNAAF 837
            + R SG LS +     EEEYR+ R+Q NRKGVDLEGY IEG+S+GG ETC+++P    AF
Sbjct: 42   SFRDSGLLSTIG---VEEEYRRARSQVNRKGVDLEGYSIEGISVGGQETCVIIPEFKCAF 98

Query: 836  DIGRCPSRAIQQDFLFITHAHLDHIGGLPMYVATRGLYSLKPPTIFVPPCIKEDVEKLFE 657
            DIGRCPSRAIQQ+F+FITHAHLDHIGGLPMYVA+RGLYSL PPT+F+P  IKEDVEKL E
Sbjct: 99   DIGRCPSRAIQQNFVFITHAHLDHIGGLPMYVASRGLYSLSPPTVFLPASIKEDVEKLLE 158

Query: 656  IHRKMSQXXXXXXXXXXXVGETYELRNDLVVRPFKTHHVIPSQGYAIYSIRKKLKKQYTH 477
            IHR M Q           VGETYE+RN+LV R F+THHVIPSQGY IYS+RKKLKKQY H
Sbjct: 159  IHRNMGQVELDVDLVALDVGETYEMRNNLVCRAFETHHVIPSQGYVIYSVRKKLKKQYMH 218

Query: 476  LKGKQIEKLKKQGVEITDVILSPEMAFTGDTTSDFLLDPRNADALRAKILITEATFLDGG 297
            LKGKQIEKLKK GVEITD ILSPE+AFTGDTT DF+LDPRNADALRAKILITEATFLD  
Sbjct: 219  LKGKQIEKLKKSGVEITDTILSPEVAFTGDTTPDFMLDPRNADALRAKILITEATFLDEA 278

Query: 296  ISIEHARRHGHTHLFELIEHAKWMRNEAILLTHFSSRYKIQDIDEAVSKLQQKVPGKVVA 117
            +SIEHAR+HGHTH+FE+IE+A+W+RN+AILLTHFSSRY I+DI +AVSKLQ  +  KVV 
Sbjct: 279  VSIEHARQHGHTHIFEIIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSNLTAKVVP 338

Query: 116  LKEGFKS 96
            L EGFKS
Sbjct: 339  LTEGFKS 345