BLASTX nr result

ID: Coptis24_contig00019260 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019260
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327369.1| predicted protein [Populus trichocarpa] gi|2...   152   3e-35
gb|ABK96037.1| unknown [Populus trichocarpa]                          152   3e-35
emb|CBI39250.3| unnamed protein product [Vitis vinifera]              148   5e-34
ref|XP_002282092.1| PREDICTED: d-3-phosphoglycerate dehydrogenas...   148   5e-34
ref|XP_002521771.1| phosphoglycerate dehydrogenase, putative [Ri...   143   1e-32

>ref|XP_002327369.1| predicted protein [Populus trichocarpa] gi|222835739|gb|EEE74174.1|
           predicted protein [Populus trichocarpa]
          Length = 343

 Score =  152 bits (384), Expect = 3e-35
 Identities = 74/97 (76%), Positives = 85/97 (87%)
 Frame = -2

Query: 309 VARIPGNVCGNSASCAEMAIYLMLGLLKKQNEMEISVKQRRLGEPIGDTLLGKTVYIMGF 130
           VARIPG+  GN+ASCAEMAIYLMLGLL+KQNEM+IS+KQ+RLGEP G+TL GKTV+IMGF
Sbjct: 99  VARIPGDATGNAASCAEMAIYLMLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGF 158

Query: 129 GNIGTDLAIRLRPFGVKILATKRNWESNSLDSCQPNG 19
           GNIG DLA RLRPFGVKI+ATKR+W  +S  S Q NG
Sbjct: 159 GNIGIDLAKRLRPFGVKIIATKRSWALHSEGSLQSNG 195


>gb|ABK96037.1| unknown [Populus trichocarpa]
          Length = 343

 Score =  152 bits (384), Expect = 3e-35
 Identities = 74/97 (76%), Positives = 85/97 (87%)
 Frame = -2

Query: 309 VARIPGNVCGNSASCAEMAIYLMLGLLKKQNEMEISVKQRRLGEPIGDTLLGKTVYIMGF 130
           VARIPG+  GN+ASCAEMAIYLMLGLL+KQNEM+IS+KQ+RLGEP G+TL GKTV+IMGF
Sbjct: 99  VARIPGDATGNAASCAEMAIYLMLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGF 158

Query: 129 GNIGTDLAIRLRPFGVKILATKRNWESNSLDSCQPNG 19
           GNIG DLA RLRPFGVKI+ATKR+W  +S  S Q NG
Sbjct: 159 GNIGIDLAKRLRPFGVKIIATKRSWALHSEGSLQSNG 195


>emb|CBI39250.3| unnamed protein product [Vitis vinifera]
          Length = 343

 Score =  148 bits (373), Expect = 5e-34
 Identities = 74/102 (72%), Positives = 85/102 (83%)
 Frame = -2

Query: 309 VARIPGNVCGNSASCAEMAIYLMLGLLKKQNEMEISVKQRRLGEPIGDTLLGKTVYIMGF 130
           VARI     GN+ASCAEMAIYLMLGLL+KQ EM+IS+KQ+ +GEPIGDTL GKTV+IMGF
Sbjct: 99  VARIASGETGNAASCAEMAIYLMLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGF 158

Query: 129 GNIGTDLAIRLRPFGVKILATKRNWESNSLDSCQPNGSCVPS 4
           GNIG DLA RLRPFGV+ILATKR+W S SL+S Q NG   P+
Sbjct: 159 GNIGIDLAKRLRPFGVRILATKRSWASQSLNSSQSNGFPTPN 200


>ref|XP_002282092.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform 1 [Vitis
           vinifera]
          Length = 373

 Score =  148 bits (373), Expect = 5e-34
 Identities = 74/102 (72%), Positives = 85/102 (83%)
 Frame = -2

Query: 309 VARIPGNVCGNSASCAEMAIYLMLGLLKKQNEMEISVKQRRLGEPIGDTLLGKTVYIMGF 130
           VARI     GN+ASCAEMAIYLMLGLL+KQ EM+IS+KQ+ +GEPIGDTL GKTV+IMGF
Sbjct: 129 VARIASGETGNAASCAEMAIYLMLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGF 188

Query: 129 GNIGTDLAIRLRPFGVKILATKRNWESNSLDSCQPNGSCVPS 4
           GNIG DLA RLRPFGV+ILATKR+W S SL+S Q NG   P+
Sbjct: 189 GNIGIDLAKRLRPFGVRILATKRSWASQSLNSSQSNGFPTPN 230


>ref|XP_002521771.1| phosphoglycerate dehydrogenase, putative [Ricinus communis]
           gi|223538984|gb|EEF40581.1| phosphoglycerate
           dehydrogenase, putative [Ricinus communis]
          Length = 380

 Score =  143 bits (361), Expect = 1e-32
 Identities = 65/88 (73%), Positives = 82/88 (93%)
 Frame = -2

Query: 309 VARIPGNVCGNSASCAEMAIYLMLGLLKKQNEMEISVKQRRLGEPIGDTLLGKTVYIMGF 130
           VARIPG+  GN+ASCAEMAIYLMLGLL+KQN+M++S+KQ++LGEPIG+TLLGKTV+I+G+
Sbjct: 136 VARIPGDFTGNAASCAEMAIYLMLGLLRKQNQMQVSIKQKKLGEPIGETLLGKTVFILGY 195

Query: 129 GNIGTDLAIRLRPFGVKILATKRNWESN 46
           GNIG +LA RL+PFGVK++ATKR W SN
Sbjct: 196 GNIGIELAKRLQPFGVKVIATKRKWTSN 223


Top