BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019223
         (3328 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                     710   0.0  
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   699   0.0  
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       699   0.0  
emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera]   687   0.0  
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              677   0.0  

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  710 bits (1832), Expect = 0.0
 Identities = 372/802 (46%), Positives = 520/802 (64%), Gaps = 6/802 (0%)
 Frame = -3

Query: 3326 GTVYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLSDEFKELCENKGIARQL 3147
            G +YLM HKS++ + FK+++N V+N L +TIK LR+DRG EY+S EF    ++ GI  QL
Sbjct: 529  GYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQL 588

Query: 3146 TIPYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDALLTAAHILNLVPSKTVDKTP 2967
            T P TPQ NGVSERRN+TLLDMVRSMM+Q++LP+SFWG AL TAA  LN VPSK+V+KTP
Sbjct: 589  TPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAALTLNRVPSKSVEKTP 648

Query: 2966 YELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCVFIRYSETSKGYVFLGEDTQ 2787
            YE+WTG+ P L++LK WGC A+V     +  KL+    KC  + Y + +KGY F   +  
Sbjct: 649  YEIWTGQPPSLSFLKIWGCEAYVKRLQSD--KLTPKSDKCFVVGYPKETKGYYFYNRE-- 704

Query: 2786 GHVTEIEARNVRFLEDQYPMRGEVDKDIQLYEVDNL-----ITADEQGEDETFINPDSSN 2622
                   AR+  FLE ++  R      + L EV         T + Q ED++   P    
Sbjct: 705  -QAKVFVARHGVFLEKEFLSRRVSGIRVHLEEVQETPETVSATTEPQQEDQSVAPP---- 759

Query: 2621 NGIGQIIDQSQPRKSVRGHIPKHRFEIEGEINMTNAFTEISDEPKTFKEAISGSNTSKWM 2442
                 ++D   PR+S R      R+         +     +DEPKT++EA+ G +++KW+
Sbjct: 760  -----VVDTPAPRRSERSRRAPDRYT---GAEQRDILLLDNDEPKTYEEAMVGHDSNKWL 811

Query: 2441 EAMKEELESMKKNKVWDLVDLPPNRRSIGNKWVLKIKKNAEGNINKFKARLVAKGYTQKE 2262
             AMK E+ESM  N+VW+LVD P   ++I  KW+ K K + +GN++ +KARLVAKG+ Q +
Sbjct: 812  GAMKSEIESMYDNQVWNLVDPPDGVKTIECKWLFKKKADMDGNVHIYKARLVAKGFKQIQ 871

Query: 2261 GIDYEDTFSPVVRFASIHLLLSMVAHLDLELYQMDVKTAFLNGELQEEIYMDQPTSFSIK 2082
            G+DY++TFSPV    SI ++L++ A+ D E++QMDVKTAFLNG L E++YM QP  F   
Sbjct: 872  GVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDP 931

Query: 2081 GQEHKVCKLNRSIYDLKQASRQWNLRFHEAMLQDKFEMVNKDHCVYVKTSKNGFVILSLY 1902
                K+CKL +SIY LKQASR WN+RF E +    F    ++ CVY K S +  V L LY
Sbjct: 932  ESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSGSAIVFLILY 991

Query: 1901 VDDILLAGNNKALINST*EWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSLSQETYIKK 1722
            VDDILL GN+  ++ S    L  +F MKD+GEA+Y+LG++I RDR KRL+ LSQ TYI K
Sbjct: 992  VDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDK 1051

Query: 1721 VLERFNMTDCKQVDLPVSLGESLSS*MSPKNPTETQAMKNVPYSSAIGSLMYAMLCTRPD 1542
            VL+RFNM D K+  LP+S G +LS    P+   E   M  VPY+SAIGS+MYAMLCTRPD
Sbjct: 1052 VLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRPD 1111

Query: 1541 ICYAVGLVSRFQTNPGVAHWKAVKKIMRYLKGTVDYSLVYQG-KDLKLIGYSDAHWAGDL 1365
            + YA+   SR+Q++PG  HW AVK I++YL+ T D  LVY G +DL + GY+DA +  D 
Sbjct: 1112 VSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDASFQTDK 1171

Query: 1364 DERKSTSGHTYIMNGGAISWSSKKQTSIALSTMEPEYIACCSATQEAVWLRRFIKHLSVF 1185
            D+ +S SG  + +NGGA+SW S KQ ++A ST E EYIA   A +EAVW+++F+  L V 
Sbjct: 1172 DDYRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSELGVM 1231

Query: 1184 SRAAEPVHIWTDSMAALAYAKNPKYHGRTKHIELKYHYVRQMILKKKVVLQHISTDQMVA 1005
            +    P+ ++ D+  A+A AK P+ H ++KHI  +YH +R+++ +  V +  + TD  +A
Sbjct: 1232 TSTTGPMSLYCDNSGAIAQAKEPRSHQKSKHILRRYHLIREIVDRGDVKICKVHTDLNIA 1291

Query: 1004 DPLTKPIPKELFLAHVKMLGLK 939
            DPLTKP+P+    AH + +G++
Sbjct: 1292 DPLTKPLPQPKHEAHTRAMGIR 1313


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  699 bits (1804), Expect = 0.0
 Identities = 372/799 (46%), Positives = 513/799 (64%), Gaps = 3/799 (0%)
 Frame = -3

Query: 3326 GTVYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLSDEFKELCENKGIARQL 3147
            G VYLM HKS + + FK+++N V+NQ  ++IKALR+DRG EYLS  F +     GI  QL
Sbjct: 173  GYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQL 232

Query: 3146 TIPYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDALLTAAHILNLVPSKTVDKTP 2967
            T P TPQ NGVSERRN+TLLDMVRSMM+  +LP  FWG AL T+A +LN  PSK+V+KTP
Sbjct: 233  TPPGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTP 292

Query: 2966 YELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCVFIRYSETSKGYVFLGEDTQ 2787
            YE+WTG+ P L++LK WGC ++      +  KL     KC F+ Y + +KGY F    T 
Sbjct: 293  YEIWTGKVPNLSFLKIWGCESYAKRLITD--KLGPKSDKCYFVGYPKETKGYYFY-HPTD 349

Query: 2786 GHVTEIEARNVRFLEDQYPMRGEVDKDIQLYEVDNLITADEQGEDETFINPDSSN--NGI 2613
              V  +  RN  FLE ++  +G     + L EV      + QG+  T       +    +
Sbjct: 350  NKVFVV--RNGAFLEREFLSKGTSGSKVLLEEV-----REPQGDVPTSQEEHQLDLRRVV 402

Query: 2612 GQIIDQSQPRKSVRGHIPKHRFEIEGEINMTNAFTEISDEPKTFKEAISGSNTSKWMEAM 2433
              I+ + + R+S R      RF  +  ++    F   SDEP +++EA+ G ++ KW+EA 
Sbjct: 403  EPILVEPEVRRSERSRHEPDRFR-DWVMDDHALFMIESDEPTSYEEALMGPDSDKWLEAA 461

Query: 2432 KEELESMKKNKVWDLVDLPPNRRSIGNKWVLKIKKNAEGNINKFKARLVAKGYTQKEGID 2253
            K E+ESM +NKVW LVDLP   + I  KW+ K K + +GNI  +KA LVAKGY Q  GID
Sbjct: 462  KSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAGLVAKGYKQVHGID 521

Query: 2252 YEDTFSPVVRFASIHLLLSMVAHLDLELYQMDVKTAFLNGELQEEIYMDQPTSFSIKGQE 2073
            Y++T+SPV    SI +LL+  AH D E++QMDVKTAFLNG L+E +YM QP  F++    
Sbjct: 522  YDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAA 581

Query: 2072 HKVCKLNRSIYDLKQASRQWNLRFHEAMLQDKFEMVNKDHCVYVKTSKNGFVILSLYVDD 1893
             KVCKL+RSIY LKQASR WNLRF+EA+ +  F    ++ CVY KTS +    L LYVDD
Sbjct: 582  RKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDD 641

Query: 1892 ILLAGNNKALINST*EWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSLSQETYIKKVLE 1713
            ILL GN+  L+ S   WL   F MKDMGEA+Y+LG++I RDR  +++ LSQ+TYI KVL 
Sbjct: 642  ILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLH 701

Query: 1712 RFNMTDCKQVDLPVSLGESLSS*MSPKNPTETQAMKNVPYSSAIGSLMYAMLCTRPDICY 1533
            RFNM D K+  +P+S G +LS    P    E + M  +PY+SAIGS+MYAML TRPD+  
Sbjct: 702  RFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIGSIMYAMLYTRPDVAC 761

Query: 1532 AVGLVSRFQTNPGVAHWKAVKKIMRYLKGTVDYSLVYQG-KDLKLIGYSDAHWAGDLDER 1356
            A+ + SR+Q++PG +HW  V+ I +YL+ T D  LVY G ++L + GY+DA +  D D+ 
Sbjct: 762  ALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKFLVYGGSEELVVSGYTDASFQTDKDDF 821

Query: 1355 KSTSGHTYIMNGGAISWSSKKQTSIALSTMEPEYIACCSATQEAVWLRRFIKHLSVFSRA 1176
            +S SG  + +NGGA+SW S KQ+++A ST E EYIA   A +E VW+R+FI  L V    
Sbjct: 822  RSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWIRKFITELGVVPSI 881

Query: 1175 AEPVHIWTDSMAALAYAKNPKYHGRTKHIELKYHYVRQMILKKKVVLQHISTDQMVADPL 996
            + P+ ++ D+  A+A AK PK H ++KHI+ +YH +R++I +  V +  +STD  VAD  
Sbjct: 882  SGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDVKISRVSTDANVADHF 941

Query: 995  TKPIPKELFLAHVKMLGLK 939
            TKP+P+    +H   +G++
Sbjct: 942  TKPLPQPKHESHTTAIGIR 960


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  699 bits (1803), Expect = 0.0
 Identities = 371/774 (47%), Positives = 493/774 (63%), Gaps = 10/774 (1%)
 Frame = -3

Query: 3326 GTVYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLSDEFKELCENKGIARQL 3147
            G VYL+ HKS++ + FK+YK  VEN++ +TIK LR+DRG EY+  +F++     GI  QL
Sbjct: 534  GHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQL 593

Query: 3146 TIPYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDALLTAAHILNLVPSKTVDKTP 2967
            + P TPQQNGVSERRN+TLLDMVRSMM+ A LP SFWG AL TA HILN VPSK+V +TP
Sbjct: 594  SAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETAIHILNNVPSKSVLETP 653

Query: 2966 YELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCVFIRYSETSKGYVFLGEDTQ 2787
            YELW GR+  L Y + WGC A V  QN +  KL    K C+F+ Y + S+G +F      
Sbjct: 654  YELWKGRKSSLRYFRIWGCPAHVLVQNPK--KLEPRSKLCLFVGYPKESRGGLFYHPQEN 711

Query: 2786 GHVTEIEARNVRFLEDQYPMRGEVDKDIQLYEVDNLITADEQGEDETFINPDSSNNGIGQ 2607
                   + N  FLE+ +    +    I L E+    T            P SS   + +
Sbjct: 712  ---KVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATD----------KPSSSTKVVDK 758

Query: 2606 --IIDQSQPRKSVRGHIPKHRFEIEGEINMTNAFTEIS--------DEPKTFKEAISGSN 2457
              I DQS   + +R  +P+    +  + N      E          ++P T+K+A++  +
Sbjct: 759  ANISDQSHTSQELR--VPRRSGRVVHQPNRYLGLVETQIIIPDDGVEDPLTYKQAMNDVD 816

Query: 2456 TSKWMEAMKEELESMKKNKVWDLVDLPPNRRSIGNKWVLKIKKNAEGNINKFKARLVAKG 2277
              +W++AM  E+ESM  N VW LVDLP + + IG KW+ K K++  G +  FKARLVAKG
Sbjct: 817  RDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKG 876

Query: 2276 YTQKEGIDYEDTFSPVVRFASIHLLLSMVAHLDLELYQMDVKTAFLNGELQEEIYMDQPT 2097
            YTQKEG+DYE+TFSPV    SI +LLS+    + E++QMDVKTAFLNG L+E IYM QP 
Sbjct: 877  YTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPE 936

Query: 2096 SFSIKGQEHKVCKLNRSIYDLKQASRQWNLRFHEAMLQDKFEMVNKDHCVYVKTSKNGFV 1917
             F  + QE KVCKL +SIY LKQASR WN+RF  A+    FE    + CVY K   +   
Sbjct: 937  GFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVA 996

Query: 1916 ILSLYVDDILLAGNNKALINST*EWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSLSQE 1737
             L LYVDDILL GN+   +    +WL+  F+MKD+GEA Y+LG++I R+R  + L++SQ 
Sbjct: 997  FLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQA 1056

Query: 1736 TYIKKVLERFNMTDCKQVDLPVSLGESLSS*MSPKNPTETQAMKNVPYSSAIGSLMYAML 1557
            +YI KVL R+ M + K+  LP   G  LS    PK P E + M+N+PYSSA+GSLMYAML
Sbjct: 1057 SYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLMYAML 1116

Query: 1556 CTRPDICYAVGLVSRFQTNPGVAHWKAVKKIMRYLKGTVDYSLVYQGKDLKLIGYSDAHW 1377
            CTRPDICY+VG+VSR+Q+NPG  HW AVK I++YL+ T +Y LVY  KDL L GY+D+ +
Sbjct: 1117 CTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYTDSDF 1176

Query: 1376 AGDLDERKSTSGHTYIMNGGAISWSSKKQTSIALSTMEPEYIACCSATQEAVWLRRFIKH 1197
              D D RKSTSG  + +NGGA+ W S KQT IA STME EY+A C A +EAVWLR+F+  
Sbjct: 1177 QSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRKFLTD 1236

Query: 1196 LSVFSRAAEPVHIWTDSMAALAYAKNPKYHGRTKHIELKYHYVRQMILKKKVVL 1035
            L V      P+ ++ D+  A+A +K P+ H R KHIE KYH +R+++ +  VV+
Sbjct: 1237 LEVVPNMHLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVHRGDVVV 1290


>emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera]
          Length = 1356

 Score =  687 bits (1773), Expect = 0.0
 Identities = 362/827 (43%), Positives = 524/827 (63%), Gaps = 32/827 (3%)
 Frame = -3

Query: 3326 GTVYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLS----------DEFKEL 3177
            G ++L+  KS +LD FK +K  VE QL++ IK++R+DRG EY              F + 
Sbjct: 523  GYLFLIHEKSQSLDVFKTFKAEVELQLNKRIKSVRSDRGGEYYGRYDGSGEQRPGPFAKY 582

Query: 3176 CENKGIARQLTIPYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDALLTAAHILNL 2997
             E  GI  Q T+P +P  NGV+ERRN+TL DMVRSM++ + LP   WG+AL TAA+ILN 
Sbjct: 583  LEECGIVPQYTMPGSPSMNGVAERRNRTLKDMVRSMISHSTLPEKLWGEALKTAAYILNR 642

Query: 2996 VPSKTVDKTPYELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCVFIRYSETSK 2817
            VP+K   KTPYELWTGR+P L +   WGC A          KL +      FI Y+E S+
Sbjct: 643  VPTKAAAKTPYELWTGRKPSLKHFHIWGCPAEARPYKPHEKKLDSKTVSSYFIGYAERSR 702

Query: 2816 GYVFLGEDTQ-----GHVTEIE---------ARNVRFLEDQYPMRGEVDKDIQLYEVDNL 2679
            G+ F     +     G  T  E         ARN+ F E++       +  + L  +D  
Sbjct: 703  GFKFYDPAIRSIFETGTATFFEDVEFGGRNQARNIVFEEEEGSTIAFDNVQVSLPIIDQE 762

Query: 2678 ITADEQGEDETFINPDSSNNGIGQIIDQSQPRKSV--RGHIPKHRFEIEGEINMTNAFTE 2505
            +  D Q  D   + P  +N  I       QP++++  R    + R  I  +  +     E
Sbjct: 763  VNLDPQPTDN-IVQPLIANEDIAPEEQTQQPQENMPLRRSTRERRNAISDDYIVYLQERE 821

Query: 2504 IS-----DEPKTFKEAISGSNTSKWMEAMKEELESMKKNKVWDLVDLPPNRRSIGNKWVL 2340
            +      D+P  F++A+  SN+ KW+EAM EE +SM+ NKVW+LV LP   + IG KW+ 
Sbjct: 822  VESGMMEDDPINFQQAMKSSNSHKWIEAMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIF 881

Query: 2339 KIKKNAEGNINKFKARLVAKGYTQKEGIDYEDTFSPVVRFASIHLLLSMVAHLDLELYQM 2160
            K K+++ GN+ ++KARLVAKG+TQKEGID+++TFSPV    S  +++++VAH DLEL+QM
Sbjct: 882  KTKRDSNGNVERYKARLVAKGFTQKEGIDFKETFSPVSTKDSFRIIMALVAHYDLELHQM 941

Query: 2159 DVKTAFLNGELQEEIYMDQPTSFSIKGQEHKVCKLNRSIYDLKQASRQWNLRFHEAMLQD 1980
            DVKTAFLNG++ E IYM QP +F  +  ++ VCKL +SIY LKQASRQW  +FH+ ++  
Sbjct: 942  DVKTAFLNGDIDETIYMVQPENFVSEDSKNMVCKLTKSIYGLKQASRQWYFKFHQIIVSY 1001

Query: 1979 KFEMVNKDHCVYVKTSKNGFVILSLYVDDILLAGNNKALINST*EWLSLNFEMKDMGEAS 1800
             FE    D CVY K S + ++ L LYVDDILLA N+ ++++ T  +LS +FEMKD+G+AS
Sbjct: 1002 GFEANLMDECVYHKFSGSKYIFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDAS 1061

Query: 1799 YVLGVKITRDRPKRLLSLSQETYIKKVLERFNMTDCKQVDLPVSLGESLSS*MSPKNPTE 1620
            +VLG++I RDR + +L LSQ TYI KVL+R+ M + K  D PV+ G+  S    PKN  E
Sbjct: 1062 FVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSLE 1121

Query: 1619 TQAMKNVPYSSAIGSLMYAMLCTRPDICYAVGLVSRFQTNPGVAHWKAVKKIMRYLKGTV 1440
            +Q M+ +PY+SA+GSLMYA +CTRPDI Y VG++ R+ +NPG+ HWKA K++MRYL+ T 
Sbjct: 1122 SQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKAAKRVMRYLQRTK 1181

Query: 1439 DYSLVYQGKD-LKLIGYSDAHWAGDLDERKSTSGHTYIMNGGAISWSSKKQTSIALSTME 1263
            +Y L Y+  D L+LIGYSD+ +AG  D R+STSG+ Y++ GGAISW S KQT +  STME
Sbjct: 1182 EYMLTYRRLDQLELIGYSDSDFAGCQDSRRSTSGYIYLLAGGAISWRSAKQTLVTSSTME 1241

Query: 1262 PEYIACCSATQEAVWLRRFIKHLSVFSRAAEPVHIWTDSMAALAYAKNPKYHGRTKHIEL 1083
             E++AC  A+ + +WLR F+  L V      P+ I+ D+ +A+ Y+ N +   ++K+I++
Sbjct: 1242 AEFVACYEASNQGIWLRNFVTGLRVLDGIERPLKIFCDNKSAVLYSNNNRSSTKSKYIDI 1301

Query: 1082 KYHYVRQMILKKKVVLQHISTDQMVADPLTKPIPKELFLAHVKMLGL 942
            K+  V++ +   ++ ++HI T+ M+ADPLTK +P ++F  H   +G+
Sbjct: 1302 KFLVVKEKVQSGQISIEHIGTNSMIADPLTKGLPPKVFHEHTAHMGV 1348


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  677 bits (1747), Expect = 0.0
 Identities = 351/795 (44%), Positives = 512/795 (64%), Gaps = 10/795 (1%)
 Frame = -3

Query: 3320 VYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLSDEFKELCENKGIARQLTI 3141
            VY +  KSD    FK +K  +E +  + IK LRTD G EY+  EF   C+ +GI RQ T+
Sbjct: 516  VYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTV 575

Query: 3140 PYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDALLTAAHILNLVPSKTVD-KTPY 2964
             +TPQQNGV+ER N+TLL+  R+M+  A +  SFW +A+ TA +++N  PS T+D KTP 
Sbjct: 576  AHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTIDLKTPM 635

Query: 2963 ELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCVFIRYSETSKGYVFLGEDTQG 2784
            E+W G+    + L  +GC  +V   +QE  KL    +KC+F+ Y++  KGY  L + T  
Sbjct: 636  EMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYR-LWDPTAR 694

Query: 2783 HVTEIEARNVRFLEDQYPMRGEVD---KDIQLYEVDNLITADEQGEDETFIN---PDSSN 2622
             V  + +R+V F E++     + D   K+  + +++      +  E E+      PD  N
Sbjct: 695  KV--VVSRDVVFAENELQSEQKNDSTFKETAILQIEEKSKESDSSEAESVHEEQEPDDVN 752

Query: 2621 NGIGQIIDQSQPRKSVRGHIPKHRFEIEGEINMTNAFTEISDE--PKTFKEAISGSNTSK 2448
            NG+ +   Q+Q          K  ++ +  +   +A+  I++E  P TF EA++GS+ S+
Sbjct: 753  NGVRRSTRQTQ----------KPSWQSDYVMTGHDAYCLIAEEGEPSTFHEALNGSDASQ 802

Query: 2447 WMEAMKEELESMKKNKVWDLVDLPPNRRSIGNKWVLKIKKNAEGNINKFKARLVAKGYTQ 2268
            WM A+ EE+E+++KNK W+LV+LP  R++IGNKWV KIK++    + +++ARLV KGY Q
Sbjct: 803  WMTAIHEEMEALRKNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQ 862

Query: 2267 KEGIDYEDTFSPVVRFASIHLLLSMVAHLDLELYQMDVKTAFLNGELQEEIYMDQPTSFS 2088
            KEGID+ + FSPVVR  +I ++L+M A LDL L Q+DVKTAFL+GEL+EEIYM QP  F 
Sbjct: 863  KEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFK 922

Query: 2087 IKGQEHKVCKLNRSIYDLKQASRQWNLRFHEAMLQDKFEMVNKDHCVYVKT-SKNGFVIL 1911
             +G+E+ VC+L +S+Y LKQA R W  RF   ++   +  ++ DHC Y K    N F+IL
Sbjct: 923  EQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIIL 982

Query: 1910 SLYVDDILLAGNNKALINST*EWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSLSQETY 1731
             LYVDDIL+ G NK  +      L+  F+MKD+G A+ +LG++I RDR  R + LSQ+ Y
Sbjct: 983  LLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNY 1042

Query: 1730 IKKVLERFNMTDCKQVDLPVSLGESLSS*MSPKNPTETQAMKNVPYSSAIGSLMYAMLCT 1551
            ++KVL RFNM DCK +  P+ +   LSS MSP N  E   M  VPY+SA+GSLMYAM+CT
Sbjct: 1043 LRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICT 1102

Query: 1550 RPDICYAVGLVSRFQTNPGVAHWKAVKKIMRYLKGTVDYSLVYQGKDLKLIGYSDAHWAG 1371
            RPDI  AVG+VSRF  +PG  HW AVK+IMRY+KGT   ++ + G +L + GY D+ +AG
Sbjct: 1103 RPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVRGYVDSDFAG 1162

Query: 1370 DLDERKSTSGHTYIMNGGAISWSSKKQTSIALSTMEPEYIACCSATQEAVWLRRFIKHLS 1191
            D D+RKST+G+ + + GGA+SW SK QT +ALST E EY+A   A +EA+W++R ++ L 
Sbjct: 1163 DHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEEL- 1221

Query: 1190 VFSRAAEPVHIWTDSMAALAYAKNPKYHGRTKHIELKYHYVRQMILKKKVVLQHISTDQM 1011
                  E + ++ DS +AL  A+NP +H RTKHI ++YH+VR+++ +  V +Q I T+  
Sbjct: 1222 --GHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDN 1279

Query: 1010 VADPLTKPIPKELFL 966
            +AD +TKPI  + F+
Sbjct: 1280 LADVMTKPINADKFV 1294