BLASTX nr result
ID: Coptis24_contig00019223
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00019223 (3328 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAA22288.1| polyprotein [Oryza australiensis] 710 0.0 gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 699 0.0 gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 699 0.0 emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera] 687 0.0 gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 677 0.0 >dbj|BAA22288.1| polyprotein [Oryza australiensis] Length = 1317 Score = 710 bits (1832), Expect = 0.0 Identities = 372/802 (46%), Positives = 520/802 (64%), Gaps = 6/802 (0%) Frame = -3 Query: 3326 GTVYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLSDEFKELCENKGIARQL 3147 G +YLM HKS++ + FK+++N V+N L +TIK LR+DRG EY+S EF ++ GI QL Sbjct: 529 GYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQL 588 Query: 3146 TIPYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDALLTAAHILNLVPSKTVDKTP 2967 T P TPQ NGVSERRN+TLLDMVRSMM+Q++LP+SFWG AL TAA LN VPSK+V+KTP Sbjct: 589 TPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAALTLNRVPSKSVEKTP 648 Query: 2966 YELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCVFIRYSETSKGYVFLGEDTQ 2787 YE+WTG+ P L++LK WGC A+V + KL+ KC + Y + +KGY F + Sbjct: 649 YEIWTGQPPSLSFLKIWGCEAYVKRLQSD--KLTPKSDKCFVVGYPKETKGYYFYNRE-- 704 Query: 2786 GHVTEIEARNVRFLEDQYPMRGEVDKDIQLYEVDNL-----ITADEQGEDETFINPDSSN 2622 AR+ FLE ++ R + L EV T + Q ED++ P Sbjct: 705 -QAKVFVARHGVFLEKEFLSRRVSGIRVHLEEVQETPETVSATTEPQQEDQSVAPP---- 759 Query: 2621 NGIGQIIDQSQPRKSVRGHIPKHRFEIEGEINMTNAFTEISDEPKTFKEAISGSNTSKWM 2442 ++D PR+S R R+ + +DEPKT++EA+ G +++KW+ Sbjct: 760 -----VVDTPAPRRSERSRRAPDRYT---GAEQRDILLLDNDEPKTYEEAMVGHDSNKWL 811 Query: 2441 EAMKEELESMKKNKVWDLVDLPPNRRSIGNKWVLKIKKNAEGNINKFKARLVAKGYTQKE 2262 AMK E+ESM N+VW+LVD P ++I KW+ K K + +GN++ +KARLVAKG+ Q + Sbjct: 812 GAMKSEIESMYDNQVWNLVDPPDGVKTIECKWLFKKKADMDGNVHIYKARLVAKGFKQIQ 871 Query: 2261 GIDYEDTFSPVVRFASIHLLLSMVAHLDLELYQMDVKTAFLNGELQEEIYMDQPTSFSIK 2082 G+DY++TFSPV SI ++L++ A+ D E++QMDVKTAFLNG L E++YM QP F Sbjct: 872 GVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDP 931 Query: 2081 GQEHKVCKLNRSIYDLKQASRQWNLRFHEAMLQDKFEMVNKDHCVYVKTSKNGFVILSLY 1902 K+CKL +SIY LKQASR WN+RF E + F ++ CVY K S + V L LY Sbjct: 932 ESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSGSAIVFLILY 991 Query: 1901 VDDILLAGNNKALINST*EWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSLSQETYIKK 1722 VDDILL GN+ ++ S L +F MKD+GEA+Y+LG++I RDR KRL+ LSQ TYI K Sbjct: 992 VDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDK 1051 Query: 1721 VLERFNMTDCKQVDLPVSLGESLSS*MSPKNPTETQAMKNVPYSSAIGSLMYAMLCTRPD 1542 VL+RFNM D K+ LP+S G +LS P+ E M VPY+SAIGS+MYAMLCTRPD Sbjct: 1052 VLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRPD 1111 Query: 1541 ICYAVGLVSRFQTNPGVAHWKAVKKIMRYLKGTVDYSLVYQG-KDLKLIGYSDAHWAGDL 1365 + YA+ SR+Q++PG HW AVK I++YL+ T D LVY G +DL + GY+DA + D Sbjct: 1112 VSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDASFQTDK 1171 Query: 1364 DERKSTSGHTYIMNGGAISWSSKKQTSIALSTMEPEYIACCSATQEAVWLRRFIKHLSVF 1185 D+ +S SG + +NGGA+SW S KQ ++A ST E EYIA A +EAVW+++F+ L V Sbjct: 1172 DDYRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSELGVM 1231 Query: 1184 SRAAEPVHIWTDSMAALAYAKNPKYHGRTKHIELKYHYVRQMILKKKVVLQHISTDQMVA 1005 + P+ ++ D+ A+A AK P+ H ++KHI +YH +R+++ + V + + TD +A Sbjct: 1232 TSTTGPMSLYCDNSGAIAQAKEPRSHQKSKHILRRYHLIREIVDRGDVKICKVHTDLNIA 1291 Query: 1004 DPLTKPIPKELFLAHVKMLGLK 939 DPLTKP+P+ AH + +G++ Sbjct: 1292 DPLTKPLPQPKHEAHTRAMGIR 1313 >gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1| putative retrotransposon protein [Arabidopsis thaliana] Length = 964 Score = 699 bits (1804), Expect = 0.0 Identities = 372/799 (46%), Positives = 513/799 (64%), Gaps = 3/799 (0%) Frame = -3 Query: 3326 GTVYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLSDEFKELCENKGIARQL 3147 G VYLM HKS + + FK+++N V+NQ ++IKALR+DRG EYLS F + GI QL Sbjct: 173 GYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQL 232 Query: 3146 TIPYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDALLTAAHILNLVPSKTVDKTP 2967 T P TPQ NGVSERRN+TLLDMVRSMM+ +LP FWG AL T+A +LN PSK+V+KTP Sbjct: 233 TPPGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTP 292 Query: 2966 YELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCVFIRYSETSKGYVFLGEDTQ 2787 YE+WTG+ P L++LK WGC ++ + KL KC F+ Y + +KGY F T Sbjct: 293 YEIWTGKVPNLSFLKIWGCESYAKRLITD--KLGPKSDKCYFVGYPKETKGYYFY-HPTD 349 Query: 2786 GHVTEIEARNVRFLEDQYPMRGEVDKDIQLYEVDNLITADEQGEDETFINPDSSN--NGI 2613 V + RN FLE ++ +G + L EV + QG+ T + + Sbjct: 350 NKVFVV--RNGAFLEREFLSKGTSGSKVLLEEV-----REPQGDVPTSQEEHQLDLRRVV 402 Query: 2612 GQIIDQSQPRKSVRGHIPKHRFEIEGEINMTNAFTEISDEPKTFKEAISGSNTSKWMEAM 2433 I+ + + R+S R RF + ++ F SDEP +++EA+ G ++ KW+EA Sbjct: 403 EPILVEPEVRRSERSRHEPDRFR-DWVMDDHALFMIESDEPTSYEEALMGPDSDKWLEAA 461 Query: 2432 KEELESMKKNKVWDLVDLPPNRRSIGNKWVLKIKKNAEGNINKFKARLVAKGYTQKEGID 2253 K E+ESM +NKVW LVDLP + I KW+ K K + +GNI +KA LVAKGY Q GID Sbjct: 462 KSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAGLVAKGYKQVHGID 521 Query: 2252 YEDTFSPVVRFASIHLLLSMVAHLDLELYQMDVKTAFLNGELQEEIYMDQPTSFSIKGQE 2073 Y++T+SPV SI +LL+ AH D E++QMDVKTAFLNG L+E +YM QP F++ Sbjct: 522 YDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAA 581 Query: 2072 HKVCKLNRSIYDLKQASRQWNLRFHEAMLQDKFEMVNKDHCVYVKTSKNGFVILSLYVDD 1893 KVCKL+RSIY LKQASR WNLRF+EA+ + F ++ CVY KTS + L LYVDD Sbjct: 582 RKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDD 641 Query: 1892 ILLAGNNKALINST*EWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSLSQETYIKKVLE 1713 ILL GN+ L+ S WL F MKDMGEA+Y+LG++I RDR +++ LSQ+TYI KVL Sbjct: 642 ILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLH 701 Query: 1712 RFNMTDCKQVDLPVSLGESLSS*MSPKNPTETQAMKNVPYSSAIGSLMYAMLCTRPDICY 1533 RFNM D K+ +P+S G +LS P E + M +PY+SAIGS+MYAML TRPD+ Sbjct: 702 RFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIGSIMYAMLYTRPDVAC 761 Query: 1532 AVGLVSRFQTNPGVAHWKAVKKIMRYLKGTVDYSLVYQG-KDLKLIGYSDAHWAGDLDER 1356 A+ + SR+Q++PG +HW V+ I +YL+ T D LVY G ++L + GY+DA + D D+ Sbjct: 762 ALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKFLVYGGSEELVVSGYTDASFQTDKDDF 821 Query: 1355 KSTSGHTYIMNGGAISWSSKKQTSIALSTMEPEYIACCSATQEAVWLRRFIKHLSVFSRA 1176 +S SG + +NGGA+SW S KQ+++A ST E EYIA A +E VW+R+FI L V Sbjct: 822 RSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWIRKFITELGVVPSI 881 Query: 1175 AEPVHIWTDSMAALAYAKNPKYHGRTKHIELKYHYVRQMILKKKVVLQHISTDQMVADPL 996 + P+ ++ D+ A+A AK PK H ++KHI+ +YH +R++I + V + +STD VAD Sbjct: 882 SGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDVKISRVSTDANVADHF 941 Query: 995 TKPIPKELFLAHVKMLGLK 939 TKP+P+ +H +G++ Sbjct: 942 TKPLPQPKHESHTTAIGIR 960 >gb|ADJ18449.1| gag/pol protein [Bryonia dioica] Length = 1292 Score = 699 bits (1803), Expect = 0.0 Identities = 371/774 (47%), Positives = 493/774 (63%), Gaps = 10/774 (1%) Frame = -3 Query: 3326 GTVYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLSDEFKELCENKGIARQL 3147 G VYL+ HKS++ + FK+YK VEN++ +TIK LR+DRG EY+ +F++ GI QL Sbjct: 534 GHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQL 593 Query: 3146 TIPYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDALLTAAHILNLVPSKTVDKTP 2967 + P TPQQNGVSERRN+TLLDMVRSMM+ A LP SFWG AL TA HILN VPSK+V +TP Sbjct: 594 SAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETAIHILNNVPSKSVLETP 653 Query: 2966 YELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCVFIRYSETSKGYVFLGEDTQ 2787 YELW GR+ L Y + WGC A V QN + KL K C+F+ Y + S+G +F Sbjct: 654 YELWKGRKSSLRYFRIWGCPAHVLVQNPK--KLEPRSKLCLFVGYPKESRGGLFYHPQEN 711 Query: 2786 GHVTEIEARNVRFLEDQYPMRGEVDKDIQLYEVDNLITADEQGEDETFINPDSSNNGIGQ 2607 + N FLE+ + + I L E+ T P SS + + Sbjct: 712 ---KVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATD----------KPSSSTKVVDK 758 Query: 2606 --IIDQSQPRKSVRGHIPKHRFEIEGEINMTNAFTEIS--------DEPKTFKEAISGSN 2457 I DQS + +R +P+ + + N E ++P T+K+A++ + Sbjct: 759 ANISDQSHTSQELR--VPRRSGRVVHQPNRYLGLVETQIIIPDDGVEDPLTYKQAMNDVD 816 Query: 2456 TSKWMEAMKEELESMKKNKVWDLVDLPPNRRSIGNKWVLKIKKNAEGNINKFKARLVAKG 2277 +W++AM E+ESM N VW LVDLP + + IG KW+ K K++ G + FKARLVAKG Sbjct: 817 RDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKG 876 Query: 2276 YTQKEGIDYEDTFSPVVRFASIHLLLSMVAHLDLELYQMDVKTAFLNGELQEEIYMDQPT 2097 YTQKEG+DYE+TFSPV SI +LLS+ + E++QMDVKTAFLNG L+E IYM QP Sbjct: 877 YTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPE 936 Query: 2096 SFSIKGQEHKVCKLNRSIYDLKQASRQWNLRFHEAMLQDKFEMVNKDHCVYVKTSKNGFV 1917 F + QE KVCKL +SIY LKQASR WN+RF A+ FE + CVY K + Sbjct: 937 GFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVA 996 Query: 1916 ILSLYVDDILLAGNNKALINST*EWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSLSQE 1737 L LYVDDILL GN+ + +WL+ F+MKD+GEA Y+LG++I R+R + L++SQ Sbjct: 997 FLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQA 1056 Query: 1736 TYIKKVLERFNMTDCKQVDLPVSLGESLSS*MSPKNPTETQAMKNVPYSSAIGSLMYAML 1557 +YI KVL R+ M + K+ LP G LS PK P E + M+N+PYSSA+GSLMYAML Sbjct: 1057 SYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLMYAML 1116 Query: 1556 CTRPDICYAVGLVSRFQTNPGVAHWKAVKKIMRYLKGTVDYSLVYQGKDLKLIGYSDAHW 1377 CTRPDICY+VG+VSR+Q+NPG HW AVK I++YL+ T +Y LVY KDL L GY+D+ + Sbjct: 1117 CTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYTDSDF 1176 Query: 1376 AGDLDERKSTSGHTYIMNGGAISWSSKKQTSIALSTMEPEYIACCSATQEAVWLRRFIKH 1197 D D RKSTSG + +NGGA+ W S KQT IA STME EY+A C A +EAVWLR+F+ Sbjct: 1177 QSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRKFLTD 1236 Query: 1196 LSVFSRAAEPVHIWTDSMAALAYAKNPKYHGRTKHIELKYHYVRQMILKKKVVL 1035 L V P+ ++ D+ A+A +K P+ H R KHIE KYH +R+++ + VV+ Sbjct: 1237 LEVVPNMHLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVHRGDVVV 1290 >emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera] Length = 1356 Score = 687 bits (1773), Expect = 0.0 Identities = 362/827 (43%), Positives = 524/827 (63%), Gaps = 32/827 (3%) Frame = -3 Query: 3326 GTVYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLS----------DEFKEL 3177 G ++L+ KS +LD FK +K VE QL++ IK++R+DRG EY F + Sbjct: 523 GYLFLIHEKSQSLDVFKTFKAEVELQLNKRIKSVRSDRGGEYYGRYDGSGEQRPGPFAKY 582 Query: 3176 CENKGIARQLTIPYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDALLTAAHILNL 2997 E GI Q T+P +P NGV+ERRN+TL DMVRSM++ + LP WG+AL TAA+ILN Sbjct: 583 LEECGIVPQYTMPGSPSMNGVAERRNRTLKDMVRSMISHSTLPEKLWGEALKTAAYILNR 642 Query: 2996 VPSKTVDKTPYELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCVFIRYSETSK 2817 VP+K KTPYELWTGR+P L + WGC A KL + FI Y+E S+ Sbjct: 643 VPTKAAAKTPYELWTGRKPSLKHFHIWGCPAEARPYKPHEKKLDSKTVSSYFIGYAERSR 702 Query: 2816 GYVFLGEDTQ-----GHVTEIE---------ARNVRFLEDQYPMRGEVDKDIQLYEVDNL 2679 G+ F + G T E ARN+ F E++ + + L +D Sbjct: 703 GFKFYDPAIRSIFETGTATFFEDVEFGGRNQARNIVFEEEEGSTIAFDNVQVSLPIIDQE 762 Query: 2678 ITADEQGEDETFINPDSSNNGIGQIIDQSQPRKSV--RGHIPKHRFEIEGEINMTNAFTE 2505 + D Q D + P +N I QP++++ R + R I + + E Sbjct: 763 VNLDPQPTDN-IVQPLIANEDIAPEEQTQQPQENMPLRRSTRERRNAISDDYIVYLQERE 821 Query: 2504 IS-----DEPKTFKEAISGSNTSKWMEAMKEELESMKKNKVWDLVDLPPNRRSIGNKWVL 2340 + D+P F++A+ SN+ KW+EAM EE +SM+ NKVW+LV LP + IG KW+ Sbjct: 822 VESGMMEDDPINFQQAMKSSNSHKWIEAMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIF 881 Query: 2339 KIKKNAEGNINKFKARLVAKGYTQKEGIDYEDTFSPVVRFASIHLLLSMVAHLDLELYQM 2160 K K+++ GN+ ++KARLVAKG+TQKEGID+++TFSPV S +++++VAH DLEL+QM Sbjct: 882 KTKRDSNGNVERYKARLVAKGFTQKEGIDFKETFSPVSTKDSFRIIMALVAHYDLELHQM 941 Query: 2159 DVKTAFLNGELQEEIYMDQPTSFSIKGQEHKVCKLNRSIYDLKQASRQWNLRFHEAMLQD 1980 DVKTAFLNG++ E IYM QP +F + ++ VCKL +SIY LKQASRQW +FH+ ++ Sbjct: 942 DVKTAFLNGDIDETIYMVQPENFVSEDSKNMVCKLTKSIYGLKQASRQWYFKFHQIIVSY 1001 Query: 1979 KFEMVNKDHCVYVKTSKNGFVILSLYVDDILLAGNNKALINST*EWLSLNFEMKDMGEAS 1800 FE D CVY K S + ++ L LYVDDILLA N+ ++++ T +LS +FEMKD+G+AS Sbjct: 1002 GFEANLMDECVYHKFSGSKYIFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDAS 1061 Query: 1799 YVLGVKITRDRPKRLLSLSQETYIKKVLERFNMTDCKQVDLPVSLGESLSS*MSPKNPTE 1620 +VLG++I RDR + +L LSQ TYI KVL+R+ M + K D PV+ G+ S PKN E Sbjct: 1062 FVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSLE 1121 Query: 1619 TQAMKNVPYSSAIGSLMYAMLCTRPDICYAVGLVSRFQTNPGVAHWKAVKKIMRYLKGTV 1440 +Q M+ +PY+SA+GSLMYA +CTRPDI Y VG++ R+ +NPG+ HWKA K++MRYL+ T Sbjct: 1122 SQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKAAKRVMRYLQRTK 1181 Query: 1439 DYSLVYQGKD-LKLIGYSDAHWAGDLDERKSTSGHTYIMNGGAISWSSKKQTSIALSTME 1263 +Y L Y+ D L+LIGYSD+ +AG D R+STSG+ Y++ GGAISW S KQT + STME Sbjct: 1182 EYMLTYRRLDQLELIGYSDSDFAGCQDSRRSTSGYIYLLAGGAISWRSAKQTLVTSSTME 1241 Query: 1262 PEYIACCSATQEAVWLRRFIKHLSVFSRAAEPVHIWTDSMAALAYAKNPKYHGRTKHIEL 1083 E++AC A+ + +WLR F+ L V P+ I+ D+ +A+ Y+ N + ++K+I++ Sbjct: 1242 AEFVACYEASNQGIWLRNFVTGLRVLDGIERPLKIFCDNKSAVLYSNNNRSSTKSKYIDI 1301 Query: 1082 KYHYVRQMILKKKVVLQHISTDQMVADPLTKPIPKELFLAHVKMLGL 942 K+ V++ + ++ ++HI T+ M+ADPLTK +P ++F H +G+ Sbjct: 1302 KFLVVKEKVQSGQISIEHIGTNSMIADPLTKGLPPKVFHEHTAHMGV 1348 >gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 677 bits (1747), Expect = 0.0 Identities = 351/795 (44%), Positives = 512/795 (64%), Gaps = 10/795 (1%) Frame = -3 Query: 3320 VYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLSDEFKELCENKGIARQLTI 3141 VY + KSD FK +K +E + + IK LRTD G EY+ EF C+ +GI RQ T+ Sbjct: 516 VYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTV 575 Query: 3140 PYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDALLTAAHILNLVPSKTVD-KTPY 2964 +TPQQNGV+ER N+TLL+ R+M+ A + SFW +A+ TA +++N PS T+D KTP Sbjct: 576 AHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTIDLKTPM 635 Query: 2963 ELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCVFIRYSETSKGYVFLGEDTQG 2784 E+W G+ + L +GC +V +QE KL +KC+F+ Y++ KGY L + T Sbjct: 636 EMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYR-LWDPTAR 694 Query: 2783 HVTEIEARNVRFLEDQYPMRGEVD---KDIQLYEVDNLITADEQGEDETFIN---PDSSN 2622 V + +R+V F E++ + D K+ + +++ + E E+ PD N Sbjct: 695 KV--VVSRDVVFAENELQSEQKNDSTFKETAILQIEEKSKESDSSEAESVHEEQEPDDVN 752 Query: 2621 NGIGQIIDQSQPRKSVRGHIPKHRFEIEGEINMTNAFTEISDE--PKTFKEAISGSNTSK 2448 NG+ + Q+Q K ++ + + +A+ I++E P TF EA++GS+ S+ Sbjct: 753 NGVRRSTRQTQ----------KPSWQSDYVMTGHDAYCLIAEEGEPSTFHEALNGSDASQ 802 Query: 2447 WMEAMKEELESMKKNKVWDLVDLPPNRRSIGNKWVLKIKKNAEGNINKFKARLVAKGYTQ 2268 WM A+ EE+E+++KNK W+LV+LP R++IGNKWV KIK++ + +++ARLV KGY Q Sbjct: 803 WMTAIHEEMEALRKNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQ 862 Query: 2267 KEGIDYEDTFSPVVRFASIHLLLSMVAHLDLELYQMDVKTAFLNGELQEEIYMDQPTSFS 2088 KEGID+ + FSPVVR +I ++L+M A LDL L Q+DVKTAFL+GEL+EEIYM QP F Sbjct: 863 KEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFK 922 Query: 2087 IKGQEHKVCKLNRSIYDLKQASRQWNLRFHEAMLQDKFEMVNKDHCVYVKT-SKNGFVIL 1911 +G+E+ VC+L +S+Y LKQA R W RF ++ + ++ DHC Y K N F+IL Sbjct: 923 EQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIIL 982 Query: 1910 SLYVDDILLAGNNKALINST*EWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSLSQETY 1731 LYVDDIL+ G NK + L+ F+MKD+G A+ +LG++I RDR R + LSQ+ Y Sbjct: 983 LLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNY 1042 Query: 1730 IKKVLERFNMTDCKQVDLPVSLGESLSS*MSPKNPTETQAMKNVPYSSAIGSLMYAMLCT 1551 ++KVL RFNM DCK + P+ + LSS MSP N E M VPY+SA+GSLMYAM+CT Sbjct: 1043 LRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICT 1102 Query: 1550 RPDICYAVGLVSRFQTNPGVAHWKAVKKIMRYLKGTVDYSLVYQGKDLKLIGYSDAHWAG 1371 RPDI AVG+VSRF +PG HW AVK+IMRY+KGT ++ + G +L + GY D+ +AG Sbjct: 1103 RPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVRGYVDSDFAG 1162 Query: 1370 DLDERKSTSGHTYIMNGGAISWSSKKQTSIALSTMEPEYIACCSATQEAVWLRRFIKHLS 1191 D D+RKST+G+ + + GGA+SW SK QT +ALST E EY+A A +EA+W++R ++ L Sbjct: 1163 DHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEEL- 1221 Query: 1190 VFSRAAEPVHIWTDSMAALAYAKNPKYHGRTKHIELKYHYVRQMILKKKVVLQHISTDQM 1011 E + ++ DS +AL A+NP +H RTKHI ++YH+VR+++ + V +Q I T+ Sbjct: 1222 --GHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDN 1279 Query: 1010 VADPLTKPIPKELFL 966 +AD +TKPI + F+ Sbjct: 1280 LADVMTKPINADKFV 1294