BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019192
         (915 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515739.1| pentatricopeptide repeat-containing protein,...   247   2e-63
ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containi...   236   6e-60
emb|CBI32762.3| unnamed protein product [Vitis vinifera]              236   6e-60
ref|XP_002335015.1| predicted protein [Populus trichocarpa] gi|2...   233   5e-59
ref|XP_002534209.1| pentatricopeptide repeat-containing protein,...   210   3e-52

>ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545176|gb|EEF46686.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 613

 Score =  247 bits (631), Expect = 2e-63
 Identities = 138/292 (47%), Positives = 199/292 (68%), Gaps = 7/292 (2%)
 Frame = +1

Query: 61  PSNPSLHSNQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLD 240
           P+ P+   +Q IAEKI+K LI S  K L+  +S L SNL+S     VLSNP L  ++CL+
Sbjct: 15  PTIPTSILSQEIAEKITKILIKSGLKPLETKSS-LLSNLDSYTTNLVLSNPNLPTRSCLN 73

Query: 241 FFNFLNRTQ----HKHDIYTHVVLICRVFEARKFVLAKDLLKYIAVSD---CPFSNLASL 399
           FF  L + Q    HK D+  HV+LI R+F+ARKFV+ K++L   A+     C  S+  SL
Sbjct: 74  FFKCLQKNQSLICHKPDLRAHVILISRLFKARKFVVMKNVLTCYAMDKNLRCSVSDFVSL 133

Query: 400 VKKCSENEWVLSKLFDMLFRVYSDLKMFDKCFEVFECMKSNGIEIEERSCFVCLLALKKS 579
           +         + KL DMLFRVY D  MF++ F+VF+ M  NG++I++RSC VCLLALK+S
Sbjct: 134 IDNRFHEPKFVEKLCDMLFRVYVDNSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLALKRS 193

Query: 580 CQVELLLEFFEKMVEANVGLSVYSMSVVVDLVCKRGDIKRGLELIQEVSGRGIRANVVTY 759
            Q+ + L FF+KMVE  V ++VYSM++V+D +CK+G ++R  +L+ E++G+GI+ NVVTY
Sbjct: 194 DQMVMSLGFFKKMVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTY 253

Query: 760 NSVLDACIKVRDFARVDEILCLIDKDGISRNAATYNLLIDGHLSRGKIEEAE 915
           N++++A IK+ DF  V+E+L L++ D +  NAATY LLI+ + S GKI EAE
Sbjct: 254 NTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAE 305



 Score = 64.3 bits (155), Expect = 4e-08
 Identities = 40/158 (25%), Positives = 74/158 (46%)
 Frame = +1

Query: 439 LFDMLFRVYSDLKMFDKCFEVFECMKSNGIEIEERSCFVCLLALKKSCQVELLLEFFEKM 618
           +F+ L   Y    M D+   + + M+  G E +  +       L K  + E    +   M
Sbjct: 392 IFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTM 451

Query: 619 VEANVGLSVYSMSVVVDLVCKRGDIKRGLELIQEVSGRGIRANVVTYNSVLDACIKVRDF 798
           VE  V  +  S ++++D+ CK G++     + Q++  +G + NVVTYN+++D   K    
Sbjct: 452 VEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKL 511

Query: 799 ARVDEILCLIDKDGISRNAATYNLLIDGHLSRGKIEEA 912
                +   ++  G++ +  TY  L+ G    GK+EEA
Sbjct: 512 KEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEA 549



 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 35/157 (22%), Positives = 73/157 (46%)
 Frame = +1

Query: 442 FDMLFRVYSDLKMFDKCFEVFECMKSNGIEIEERSCFVCLLALKKSCQVELLLEFFEKMV 621
           ++ L   Y  +  F+   E+   M+ + +     +  + +     S ++    + FEKM+
Sbjct: 253 YNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKML 312

Query: 622 EANVGLSVYSMSVVVDLVCKRGDIKRGLELIQEVSGRGIRANVVTYNSVLDACIKVRDFA 801
           E  V   ++  + ++   CK G++KR   L  E++ RG+ AN  TY +++          
Sbjct: 313 ERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLD 372

Query: 802 RVDEILCLIDKDGISRNAATYNLLIDGHLSRGKIEEA 912
             + ++  +   G+  N   +N LI+G+  +G I+EA
Sbjct: 373 AAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEA 409


>ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  236 bits (602), Expect = 6e-60
 Identities = 133/302 (44%), Positives = 193/302 (63%), Gaps = 18/302 (5%)
 Frame = +1

Query: 64  SNPSLHSNQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDF 243
           SNPSL  NQ IA KISKTL+ S +KSLQ  T  L S+LNS+ +  +LSN  L  ++CLDF
Sbjct: 16  SNPSLKLNQEIAGKISKTLVSSGAKSLQT-TPSLLSSLNSQTVHLILSNHILTAESCLDF 74

Query: 244 FNFLNRTQHKHDIYTHVVLICRVFEARK---------FVLAKDLLKYIAVSD---CPFSN 387
           F+F+ +  +K D+  ++ LI +++ +RK         F   + L    AV D    P + 
Sbjct: 75  FHFIRKNYYKPDLRAYITLIFKLYRSRKSDKLHKSQKFAEIRHLFNCAAVDDGLRVPVTV 134

Query: 388 LASLV------KKCSENEWVLSKLFDMLFRVYSDLKMFDKCFEVFECMKSNGIEIEERSC 549
           +ASLV       KC+  ++   K FD+LFRVY+D KMF +  E FE M+  G  I+ERSC
Sbjct: 135 IASLVDDACNESKCNRAKFK-EKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSC 193

Query: 550 FVCLLALKKSCQVELLLEFFEKMVEANVGLSVYSMSVVVDLVCKRGDIKRGLELIQEVSG 729
            V LLAL++  QV+  L FF +MV  +V ++VYS+++V+D +CKRGD++ G +L+ EV+ 
Sbjct: 194 LVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAA 253

Query: 730 RGIRANVVTYNSVLDACIKVRDFARVDEILCLIDKDGISRNAATYNLLIDGHLSRGKIEE 909
           +G++ANVVTYN+ ++   K  D   V EIL L++K+G++ N  TY LLI G  + GKIEE
Sbjct: 254 KGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEE 313

Query: 910 AE 915
           A+
Sbjct: 314 AQ 315



 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 32/139 (23%), Positives = 63/139 (45%)
 Frame = +1

Query: 496 EVFECMKSNGIEIEERSCFVCLLALKKSCQVELLLEFFEKMVEANVGLSVYSMSVVVDLV 675
           E+   M+  G+     +  + +       ++E     FE+M E  +   VY  + ++   
Sbjct: 281 EILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCN 340

Query: 676 CKRGDIKRGLELIQEVSGRGIRANVVTYNSVLDACIKVRDFARVDEILCLIDKDGISRNA 855
           C+ G++KR L L  E++ +G+  +  TY +++    K         ++  +   GI  N 
Sbjct: 341 CRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNP 400

Query: 856 ATYNLLIDGHLSRGKIEEA 912
             +N LIDG+   G ++EA
Sbjct: 401 VIFNTLIDGYCESGMVDEA 419



 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
 Frame = +1

Query: 442 FDMLFRVYSDLKMFDKCFEVFECMKSNGIEIEERSCFVCLLALKKSCQVELLLEFFEKMV 621
           + +L   +S++   ++   +FE M+  GIE +       +    +S  V+  L  F++M 
Sbjct: 298 YTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMT 357

Query: 622 EANVGLSVYSMSVVVDLVCKRGDIKRGLELIQEVSGRGIRANVVTYNSVLDACIKVRDFA 801
           +  +  S ++   ++  VCK G ++    L+ E+ G+GI  N V +N+++D      +  
Sbjct: 358 DKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYC---ESG 414

Query: 802 RVDEILCL---IDKDGISRNAATYNLLIDGHLSRGKIEEAE 915
            VDE L L   ++K G+  +   YN +  G     + +EA+
Sbjct: 415 MVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAK 455


>emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  236 bits (602), Expect = 6e-60
 Identities = 133/302 (44%), Positives = 193/302 (63%), Gaps = 18/302 (5%)
 Frame = +1

Query: 64  SNPSLHSNQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDF 243
           SNPSL  NQ IA KISKTL+ S +KSLQ  T  L S+LNS+ +  +LSN  L  ++CLDF
Sbjct: 20  SNPSLKLNQEIAGKISKTLVSSGAKSLQT-TPSLLSSLNSQTVHLILSNHILTAESCLDF 78

Query: 244 FNFLNRTQHKHDIYTHVVLICRVFEARK---------FVLAKDLLKYIAVSD---CPFSN 387
           F+F+ +  +K D+  ++ LI +++ +RK         F   + L    AV D    P + 
Sbjct: 79  FHFIRKNYYKPDLRAYITLIFKLYRSRKSDKLHKSQKFAEIRHLFNCAAVDDGLRVPVTV 138

Query: 388 LASLV------KKCSENEWVLSKLFDMLFRVYSDLKMFDKCFEVFECMKSNGIEIEERSC 549
           +ASLV       KC+  ++   K FD+LFRVY+D KMF +  E FE M+  G  I+ERSC
Sbjct: 139 IASLVDDACNESKCNRAKFK-EKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSC 197

Query: 550 FVCLLALKKSCQVELLLEFFEKMVEANVGLSVYSMSVVVDLVCKRGDIKRGLELIQEVSG 729
            V LLAL++  QV+  L FF +MV  +V ++VYS+++V+D +CKRGD++ G +L+ EV+ 
Sbjct: 198 LVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAA 257

Query: 730 RGIRANVVTYNSVLDACIKVRDFARVDEILCLIDKDGISRNAATYNLLIDGHLSRGKIEE 909
           +G++ANVVTYN+ ++   K  D   V EIL L++K+G++ N  TY LLI G  + GKIEE
Sbjct: 258 KGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEE 317

Query: 910 AE 915
           A+
Sbjct: 318 AQ 319



 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 32/139 (23%), Positives = 63/139 (45%)
 Frame = +1

Query: 496 EVFECMKSNGIEIEERSCFVCLLALKKSCQVELLLEFFEKMVEANVGLSVYSMSVVVDLV 675
           E+   M+  G+     +  + +       ++E     FE+M E  +   VY  + ++   
Sbjct: 285 EILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCN 344

Query: 676 CKRGDIKRGLELIQEVSGRGIRANVVTYNSVLDACIKVRDFARVDEILCLIDKDGISRNA 855
           C+ G++KR L L  E++ +G+  +  TY +++    K         ++  +   GI  N 
Sbjct: 345 CRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNP 404

Query: 856 ATYNLLIDGHLSRGKIEEA 912
             +N LIDG+   G ++EA
Sbjct: 405 VIFNTLIDGYCESGMVDEA 423



 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
 Frame = +1

Query: 442 FDMLFRVYSDLKMFDKCFEVFECMKSNGIEIEERSCFVCLLALKKSCQVELLLEFFEKMV 621
           + +L   +S++   ++   +FE M+  GIE +       +    +S  V+  L  F++M 
Sbjct: 302 YTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMT 361

Query: 622 EANVGLSVYSMSVVVDLVCKRGDIKRGLELIQEVSGRGIRANVVTYNSVLDACIKVRDFA 801
           +  +  S ++   ++  VCK G ++    L+ E+ G+GI  N V +N+++D      +  
Sbjct: 362 DKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYC---ESG 418

Query: 802 RVDEILCL---IDKDGISRNAATYNLLIDGHLSRGKIEEAE 915
            VDE L L   ++K G+  +   YN +  G     + +EA+
Sbjct: 419 MVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAK 459


>ref|XP_002335015.1| predicted protein [Populus trichocarpa] gi|222832609|gb|EEE71086.1|
           predicted protein [Populus trichocarpa]
          Length = 302

 Score =  233 bits (594), Expect = 5e-59
 Identities = 124/283 (43%), Positives = 192/283 (67%), Gaps = 9/283 (3%)
 Frame = +1

Query: 64  SNPSLHSNQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDF 243
           ++P+  SN  +A+KI+KTLI +  K  +   S L SNL+S I   V SNP + + +CL+F
Sbjct: 17  ASPTSLSNSELAQKIAKTLIKAGLKPFETTNSSLLSNLDSHITNLVFSNPNVPLHSCLNF 76

Query: 244 FNFLNRTQ----HKHDIYTHVVLICRVFEARKFVLAKDLLKYIAVSD---CPFSNLASLV 402
           FNFL + Q    HK D+ +H+ ++ R+F+AR+F   K +L Y+A+     CP +NL SLV
Sbjct: 77  FNFLRKNQSFVSHKPDLQSHLSVVFRLFKARRFAEMKRVLTYVAMDSNLRCPVANLVSLV 136

Query: 403 KKCSENEW--VLSKLFDMLFRVYSDLKMFDKCFEVFECMKSNGIEIEERSCFVCLLALKK 576
           ++   N     + KL DMLFRVY+D  +F++ F VF+ M S  ++I++RSC V LLALK+
Sbjct: 137 EESGFNNEPNFVEKLCDMLFRVYADCNLFEEGFRVFDYMVSYELKIDDRSCIVFLLALKR 196

Query: 577 SCQVELLLEFFEKMVEANVGLSVYSMSVVVDLVCKRGDIKRGLELIQEVSGRGIRANVVT 756
             ++E  L  F++MVE NV ++VYS+++V+D +CKR  +KR ++L+ E++ +GI+ NVVT
Sbjct: 197 CDKMEACLGLFKRMVEFNVEVTVYSLTIVIDGLCKRRRVKRAIDLMIEMASKGIKPNVVT 256

Query: 757 YNSVLDACIKVRDFARVDEILCLIDKDGISRNAATYNLLIDGH 885
           YN++++A IK  DF  V+E+L L++ D ++ N ATY LLID H
Sbjct: 257 YNTLINAYIKRTDFDGVNEMLRLMEVDEVAFNVATYTLLIDWH 299


>ref|XP_002534209.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525704|gb|EEF28173.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 491

 Score =  210 bits (535), Expect = 3e-52
 Identities = 120/284 (42%), Positives = 184/284 (64%), Gaps = 8/284 (2%)
 Frame = +1

Query: 88  QNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDFFNFLNRTQ 267
           Q I   ISKTLI        +P+S + S+LN   ++ +LSNP      CL FFNF+ + Q
Sbjct: 23  QGIPYSISKTLI--------SPSSTVLSDLNPTKLQQILSNPLHNPLKCLCFFNFIVKNQ 74

Query: 268 H----KHDIYTHVVLICRVFEARKFVLAKDLLKYIAVSDC---PFSNLASLVKKCSENE- 423
                + D+  ++ LI R+ EARKF  A++LLK +++ D    PF  LAS ++ C   E 
Sbjct: 75  SLISFEPDLQAYLTLISRLLEARKFSDAENLLKSVSIEDYHRYPFPLLASTIEHCCCLEP 134

Query: 424 WVLSKLFDMLFRVYSDLKMFDKCFEVFECMKSNGIEIEERSCFVCLLALKKSCQVELLLE 603
            V++KLF+++ +VYSD K F +  E F+ MK+NGIEI+ER+C + LLALK+  Q+   LE
Sbjct: 135 KVIAKLFNLMLKVYSDNKKFGQVIETFDHMKNNGIEIDERTCTMHLLALKRKNQIRSSLE 194

Query: 604 FFEKMVEANVGLSVYSMSVVVDLVCKRGDIKRGLELIQEVSGRGIRANVVTYNSVLDACI 783
           FF  M+++ V +SVYS+++VVD++C+ G+IKR  EL+Q++   G + N+VTYN +++AC 
Sbjct: 195 FFNLMIKSGVEVSVYSLTIVVDVLCETGEIKRCRELVQKMVTSGTKPNIVTYNVMINACA 254

Query: 784 KVRDFARVDEILCLIDKDGISRNAATYNLLIDGHLSRGKIEEAE 915
           +  +F  +  IL L+ K+G + N  TY +L+DG+ S GK +EAE
Sbjct: 255 RRWNFNELASILDLMKKEGEAFNVNTYKILVDGYTSFGKFQEAE 298